RNA–Protein interactions for RNA: ENST00000428696.6

SGCE-204, Transcript of sarcoglycan epsilon, humanhuman

TSL 1 (best) BASIC

Gene SGCE, Length 1,409 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCE-204ENST00000428696 NISCHQ9Y2I1 1504 aa34.54■■■■□ 3.12
SGCE-204ENST00000428696 CCDC180Q9P1Z9 1646 aa30.45■■■□□ 2.47
SGCE-204ENST00000428696 ABCC9O60706 1549 aa29.89■■■□□ 2.38
SGCE-204ENST00000428696 DCAF8L2P0C7V8 631 aa29.22■■■□□ 2.27
SGCE-204ENST00000428696 ZCCHC6Q5VYS8 1495 aaKnown RBP28.76■■■□□ 2.19
SGCE-204ENST00000428696 RB1CC1Q8TDY2 1594 aa28.7■■■□□ 2.18
SGCE-204ENST00000428696 NACADO15069 1562 aa28.68■■■□□ 2.18
SGCE-204ENST00000428696 MYO15BQ96JP2 1530 aa28.46■■■□□ 2.15
SGCE-204ENST00000428696 DCAF1Q9Y4B6 1507 aa28.46■■■□□ 2.15
SGCE-204ENST00000428696 PABPN1Q86U42 306 aaKnown RBP eCLIP28.1■■■□□ 2.09
SGCE-204ENST00000428696 SCRIBQ14160 1630 aa28.02■■■□□ 2.08
SGCE-204ENST00000428696 UNC13AQ9UPW8 1703 aa27.93■■■□□ 2.06
SGCE-204ENST00000428696 BICRAQ9NZM4 1560 aa27.76■■■□□ 2.03
SGCE-204ENST00000428696 AEBP2Q6ZN18 517 aaPredicted RBP27.75■■■□□ 2.03
SGCE-204ENST00000428696 SHROOM4Q9ULL8 1493 aa27.73■■■□□ 2.03
SGCE-204ENST00000428696 DNAJC5BQ9UF47 199 aa27.28■■□□□ 1.96
SGCE-204ENST00000428696 EIF4G1Q04637 1599 aaKnown RBP27.07■■□□□ 1.92
SGCE-204ENST00000428696 CECR2Q9BXF3 1484 aa26.95■■□□□ 1.91
SGCE-204ENST00000428696 CC2D2AQ9P2K1 1620 aa26.92■■□□□ 1.9
SGCE-204ENST00000428696 BAZ1AQ9NRL2 1556 aaPredicted RBP26.74■■□□□ 1.87
SGCE-204ENST00000428696 SMARCA4P51532 1647 aa26.71■■□□□ 1.87
SGCE-204ENST00000428696 MROH2BQ7Z745 1585 aa26.66■■□□□ 1.86
SGCE-204ENST00000428696 ATAD2BQ9ULI0 1458 aa26.57■■□□□ 1.84
SGCE-204ENST00000428696 SMARCA2P51531 1590 aa26.52■■□□□ 1.84
SGCE-204ENST00000428696 NCAPD3P42695 1498 aa26.49■■□□□ 1.83
SGCE-204ENST00000428696 RSF1Q96T23 1441 aaPredicted RBP26.46■■□□□ 1.83
SGCE-204ENST00000428696 BAZ1BQ9UIG0 1483 aaKnown RBP26.41■■□□□ 1.82
SGCE-204ENST00000428696 WIZO95785 1651 aa26.38■■□□□ 1.81
SGCE-204ENST00000428696 PEG3Q9GZU2 1588 aa26.35■■□□□ 1.81
SGCE-204ENST00000428696 HMGXB3Q12766 1538 aa26.31■■□□□ 1.8
SGCE-204ENST00000428696 SUPT5HO00267 1087 aaKnown RBP26.26■■□□□ 1.79
SGCE-204ENST00000428696 TOP2AP11388 1531 aaKnown RBP26.05■■□□□ 1.76
SGCE-204ENST00000428696 CHIC1Q5VXU3 224 aa25.95■■□□□ 1.74
SGCE-204ENST00000428696 NESP48681 1621 aa25.9■■□□□ 1.74
SGCE-204ENST00000428696 CCDC88BA6NC98 1476 aa25.85■■□□□ 1.73
SGCE-204ENST00000428696 CADPSQ9ULU8 1353 aa25.81■■□□□ 1.72
SGCE-204ENST00000428696 ERCC6Q03468 1493 aa25.78■■□□□ 1.72
SGCE-204ENST00000428696 LAMC3Q9Y6N6 1575 aa25.73■■□□□ 1.71
SGCE-204ENST00000428696 PDS5BQ9NTI5 1447 aa25.67■■□□□ 1.7
SGCE-204ENST00000428696 CFTRP13569 1480 aa25.64■■□□□ 1.69
SGCE-204ENST00000428696 FANCD2Q9BXW9 1451 aa25.52■■□□□ 1.68
SGCE-204ENST00000428696 KIF21AQ7Z4S6 1674 aa25.47■■□□□ 1.67
SGCE-204ENST00000428696 CEP164Q9UPV0 1460 aa25.45■■□□□ 1.67
SGCE-204ENST00000428696 MRC2Q9UBG0 1479 aa25.34■■□□□ 1.65
SGCE-204ENST00000428696 PRDM2Q13029 1718 aa25.3■■□□□ 1.64
SGCE-204ENST00000428696 THOC2Q8NI27 1593 aaKnown RBP25.28■■□□□ 1.64
SGCE-204ENST00000428696 CUX2O14529 1486 aa25.24■■□□□ 1.63
SGCE-204ENST00000428696 URB2Q14146 1524 aaKnown RBP25.21■■□□□ 1.63
SGCE-204ENST00000428696 WDR62O43379 1518 aa25.17■■□□□ 1.62
SGCE-204ENST00000428696 TOPBP1Q92547 1522 aa25.1■■□□□ 1.61
SGCE-204ENST00000428696 ABCC8Q09428 1581 aa25.09■■□□□ 1.61
SGCE-204ENST00000428696 DNMBPQ6XZF7 1577 aa25.04■■□□□ 1.6
SGCE-204ENST00000428696 CUX1P39880 1505 aa24.99■■□□□ 1.59
SGCE-204ENST00000428696 WRNQ14191 1432 aaPredicted RBP eCLIP24.97■■□□□ 1.59
SGCE-204ENST00000428696 SOGA1O94964 1423 aa24.91■■□□□ 1.58
SGCE-204ENST00000428696 POLA1P09884 1462 aaPredicted RBP24.9■■□□□ 1.58
SGCE-204ENST00000428696 FGD5Q6ZNL6 1462 aa24.9■■□□□ 1.58
SGCE-204ENST00000428696 IFT140Q96RY7 1462 aa24.89■■□□□ 1.57
SGCE-204ENST00000428696 RAD54L2Q9Y4B4 1467 aa24.87■■□□□ 1.57
SGCE-204ENST00000428696 SYNJ1O43426 1573 aa24.82■■□□□ 1.56
SGCE-204ENST00000428696 ZNF608Q9ULD9 1512 aaPredicted RBP24.81■■□□□ 1.56
SGCE-204ENST00000428696 TDRD9Q8NDG6 1382 aaKnown RBP24.78■■□□□ 1.56
SGCE-204ENST00000428696 TOP2BQ02880 1626 aa24.78■■□□□ 1.56
SGCE-204ENST00000428696 AQRO60306 1485 aaKnown RBP eCLIP24.75■■□□□ 1.55
SGCE-204ENST00000428696 TARBP1Q13395 1621 aaKnown RBP24.73■■□□□ 1.55
SGCE-204ENST00000428696 TRIM41Q8WV44 630 aa24.73■■□□□ 1.55
SGCE-204ENST00000428696 BIVM-ERCC5R4GMW8 1640 aa24.72■■□□□ 1.55
SGCE-204ENST00000428696 EIF4G3O43432 1585 aaKnown RBP24.62■■□□□ 1.53
SGCE-204ENST00000428696 FBLN2P98095 1184 aa24.61■■□□□ 1.53
SGCE-204ENST00000428696 ABCA10Q8WWZ4 1543 aa24.6■■□□□ 1.53
SGCE-204ENST00000428696 GAPVD1Q14C86 1478 aa24.56■■□□□ 1.52
SGCE-204ENST00000428696 GRIN2BQ13224 1484 aa24.52■■□□□ 1.52
SGCE-204ENST00000428696 WDR97A6NE52 1622 aa24.49■■□□□ 1.51
SGCE-204ENST00000428696 CHMP7Q8WUX9 453 aaPredicted RBP24.49■■□□□ 1.51
SGCE-204ENST00000428696 SNAPC4Q5SXM2 1469 aa24.46■■□□□ 1.51
SGCE-204ENST00000428696 OSCARQ8IYS5 282 aa24.46■■□□□ 1.51
SGCE-204ENST00000428696 KIF27Q86VH2 1401 aa24.44■■□□□ 1.5
SGCE-204ENST00000428696 ABCA5Q8WWZ7 1642 aa24.42■■□□□ 1.5
SGCE-204ENST00000428696 PBRM1Q86U86 1689 aa24.38■■□□□ 1.49
SGCE-204ENST00000428696 DNAJC5Q9H3Z4 198 aa24.37■■□□□ 1.49
SGCE-204ENST00000428696 MAGI1Q96QZ7 1491 aaPredicted RBP24.37■■□□□ 1.49
SGCE-204ENST00000428696 FAM9AQ8IZU1 332 aaPredicted RBP24.33■■□□□ 1.49
SGCE-204ENST00000428696 IGF1RP08069 1367 aa24.33■■□□□ 1.48
SGCE-204ENST00000428696 RUSC2Q8N2Y8 1516 aa24.32■■□□□ 1.48
SGCE-204ENST00000428696 SYNJ2O15056 1496 aa24.31■■□□□ 1.48
SGCE-204ENST00000428696 ERICH3Q5RHP9 1530 aa24.3■■□□□ 1.48
SGCE-204ENST00000428696 FHAD1B1AJZ9 1412 aa24.27■■□□□ 1.48
SGCE-204ENST00000428696 CHD1O14646 1710 aa24.26■■□□□ 1.47
SGCE-204ENST00000428696 CARMIL1Q5VZK9 1371 aa24.21■■□□□ 1.47
SGCE-204ENST00000428696 ADAMTS12P58397 1594 aa24.21■■□□□ 1.47
SGCE-204ENST00000428696 GRIN2AQ12879 1464 aa24.18■■□□□ 1.46
SGCE-204ENST00000428696 CSRNP3Q8WYN3 585 aa24.17■■□□□ 1.46
SGCE-204ENST00000428696 CUL7Q14999 1698 aa24.1■■□□□ 1.45
SGCE-204ENST00000428696 EHMT2Q96KQ7 1210 aa24.1■■□□□ 1.45
SGCE-204ENST00000428696 EEA1Q15075 1411 aa24.06■■□□□ 1.44
SGCE-204ENST00000428696 RAPGEF2Q9Y4G8 1499 aa24.04■■□□□ 1.44
SGCE-204ENST00000428696 CEP170Q5SW79 1584 aa24.02■■□□□ 1.44
SGCE-204ENST00000428696 NUP160Q12769 1436 aa24.01■■□□□ 1.43
SGCE-204ENST00000428696 CLASP1Q7Z460 1538 aa23.98■■□□□ 1.43
SGCE-204ENST00000428696 JPH4Q96JJ6 628 aa23.97■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms