RNA–Protein interactions for RNA: ENST00000428693.1

TTC3-208, Transcript of tetratricopeptide repeat domain 3, humanhuman

TSL 5

Gene TTC3, Length 999 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3-208ENST00000428693 NISCHQ9Y2I1 1504 aa29.66■■■□□ 2.34
TTC3-208ENST00000428693 ABCC9O60706 1549 aa26.55■■□□□ 1.84
TTC3-208ENST00000428693 CCDC180Q9P1Z9 1646 aa26.5■■□□□ 1.83
TTC3-208ENST00000428693 DCAF8L2P0C7V8 631 aa25.28■■□□□ 1.64
TTC3-208ENST00000428693 RB1CC1Q8TDY2 1594 aa25.25■■□□□ 1.63
TTC3-208ENST00000428693 NACADO15069 1562 aa25.06■■□□□ 1.6
TTC3-208ENST00000428693 PABPN1Q86U42 306 aaKnown RBP eCLIP24.8■■□□□ 1.56
TTC3-208ENST00000428693 DNAJC5BQ9UF47 199 aa24.76■■□□□ 1.55
TTC3-208ENST00000428693 MYO15BQ96JP2 1530 aa24.66■■□□□ 1.54
TTC3-208ENST00000428693 UNC13AQ9UPW8 1703 aa24.64■■□□□ 1.54
TTC3-208ENST00000428693 ZCCHC6Q5VYS8 1495 aaKnown RBP24.58■■□□□ 1.52
TTC3-208ENST00000428693 BICRAQ9NZM4 1560 aa24.44■■□□□ 1.5
TTC3-208ENST00000428693 DCAF1Q9Y4B6 1507 aa24.41■■□□□ 1.5
TTC3-208ENST00000428693 SCRIBQ14160 1630 aa24.3■■□□□ 1.48
TTC3-208ENST00000428693 SHROOM4Q9ULL8 1493 aa24.07■■□□□ 1.44
TTC3-208ENST00000428693 CC2D2AQ9P2K1 1620 aa23.92■■□□□ 1.42
TTC3-208ENST00000428693 EIF4G1Q04637 1599 aaKnown RBP23.88■■□□□ 1.41
TTC3-208ENST00000428693 CECR2Q9BXF3 1484 aa23.87■■□□□ 1.41
TTC3-208ENST00000428693 NCAPD3P42695 1498 aa23.12■■□□□ 1.29
TTC3-208ENST00000428693 SMARCA4P51532 1647 aa23.11■■□□□ 1.29
TTC3-208ENST00000428693 ATAD2BQ9ULI0 1458 aa23.11■■□□□ 1.29
TTC3-208ENST00000428693 SMARCA2P51531 1590 aa23.05■■□□□ 1.28
TTC3-208ENST00000428693 BAZ1AQ9NRL2 1556 aaPredicted RBP23.02■■□□□ 1.28
TTC3-208ENST00000428693 ERCC6Q03468 1493 aa22.95■■□□□ 1.26
TTC3-208ENST00000428693 HMGXB3Q12766 1538 aa22.95■■□□□ 1.26
TTC3-208ENST00000428693 BAZ1BQ9UIG0 1483 aaKnown RBP22.95■■□□□ 1.26
TTC3-208ENST00000428693 MROH2BQ7Z745 1585 aa22.88■■□□□ 1.25
TTC3-208ENST00000428693 NESP48681 1621 aa22.82■■□□□ 1.24
TTC3-208ENST00000428693 PEG3Q9GZU2 1588 aa22.8■■□□□ 1.24
TTC3-208ENST00000428693 CUX2O14529 1486 aa22.73■■□□□ 1.23
TTC3-208ENST00000428693 DNAJC5Q9H3Z4 198 aa22.64■■□□□ 1.21
TTC3-208ENST00000428693 WIZO95785 1651 aa22.64■■□□□ 1.21
TTC3-208ENST00000428693 LAMC3Q9Y6N6 1575 aa22.6■■□□□ 1.21
TTC3-208ENST00000428693 PDS5BQ9NTI5 1447 aa22.53■■□□□ 1.2
TTC3-208ENST00000428693 KIF21AQ7Z4S6 1674 aa22.5■■□□□ 1.19
TTC3-208ENST00000428693 CADPSQ9ULU8 1353 aa22.49■■□□□ 1.19
TTC3-208ENST00000428693 THOC2Q8NI27 1593 aaKnown RBP22.47■■□□□ 1.19
TTC3-208ENST00000428693 RSF1Q96T23 1441 aaPredicted RBP22.45■■□□□ 1.18
TTC3-208ENST00000428693 TOP2AP11388 1531 aaKnown RBP22.31■■□□□ 1.16
TTC3-208ENST00000428693 MRC2Q9UBG0 1479 aa22.31■■□□□ 1.16
TTC3-208ENST00000428693 CEP164Q9UPV0 1460 aa22.27■■□□□ 1.16
TTC3-208ENST00000428693 FANCD2Q9BXW9 1451 aa22.25■■□□□ 1.15
TTC3-208ENST00000428693 CFTRP13569 1480 aa22.21■■□□□ 1.15
TTC3-208ENST00000428693 WDR62O43379 1518 aa22.2■■□□□ 1.14
TTC3-208ENST00000428693 CCDC88BA6NC98 1476 aa22.09■■□□□ 1.13
TTC3-208ENST00000428693 AEBP2Q6ZN18 517 aaPredicted RBP22.04■■□□□ 1.12
TTC3-208ENST00000428693 URB2Q14146 1524 aaKnown RBP22.03■■□□□ 1.12
TTC3-208ENST00000428693 PRDM2Q13029 1718 aa22■■□□□ 1.11
TTC3-208ENST00000428693 TRIM41Q8WV44 630 aa21.88■■□□□ 1.09
TTC3-208ENST00000428693 OSCARQ8IYS5 282 aa21.83■■□□□ 1.09
TTC3-208ENST00000428693 TOPBP1Q92547 1522 aa21.82■■□□□ 1.08
TTC3-208ENST00000428693 IFT140Q96RY7 1462 aa21.79■■□□□ 1.08
TTC3-208ENST00000428693 ZNF608Q9ULD9 1512 aaPredicted RBP21.77■■□□□ 1.08
TTC3-208ENST00000428693 ABCC8Q09428 1581 aa21.77■■□□□ 1.08
TTC3-208ENST00000428693 SUPT5HO00267 1087 aaKnown RBP21.76■■□□□ 1.07
TTC3-208ENST00000428693 DNMBPQ6XZF7 1577 aa21.74■■□□□ 1.07
TTC3-208ENST00000428693 EIF4G3O43432 1585 aaKnown RBP21.63■■□□□ 1.05
TTC3-208ENST00000428693 AQRO60306 1485 aaKnown RBP eCLIP21.62■■□□□ 1.053e-8■■■■■ 33.6
TTC3-208ENST00000428693 POLA1P09884 1462 aaPredicted RBP21.6■■□□□ 1.05
TTC3-208ENST00000428693 FBLN2P98095 1184 aa21.6■■□□□ 1.05
TTC3-208ENST00000428693 RAD54L2Q9Y4B4 1467 aa21.58■■□□□ 1.04
TTC3-208ENST00000428693 TARBP1Q13395 1621 aaKnown RBP21.57■■□□□ 1.04
TTC3-208ENST00000428693 SOGA1O94964 1423 aa21.56■■□□□ 1.04
TTC3-208ENST00000428693 TDRD9Q8NDG6 1382 aaKnown RBP21.53■■□□□ 1.04
TTC3-208ENST00000428693 FGD5Q6ZNL6 1462 aa21.52■■□□□ 1.03
TTC3-208ENST00000428693 CUX1P39880 1505 aa21.48■■□□□ 1.03
TTC3-208ENST00000428693 CHD1O14646 1710 aa21.47■■□□□ 1.03
TTC3-208ENST00000428693 RIMBP3CA6NJZ7 1639 aa21.47■■□□□ 1.03
TTC3-208ENST00000428693 RIMBP3BA6NNM3 1639 aa21.47■■□□□ 1.03
TTC3-208ENST00000428693 RIMBP3Q9UFD9 1639 aa21.47■■□□□ 1.03
TTC3-208ENST00000428693 ARHGEF11O15085 1522 aa21.41■■□□□ 1.02
TTC3-208ENST00000428693 CHMP7Q8WUX9 453 aaPredicted RBP21.39■■□□□ 1.01
TTC3-208ENST00000428693 SNAPC4Q5SXM2 1469 aa21.39■■□□□ 1.01
TTC3-208ENST00000428693 CYB5RLQ6IPT4 315 aa21.37■■□□□ 1.01
TTC3-208ENST00000428693 WDR97A6NE52 1622 aa21.33■■□□□ 1
TTC3-208ENST00000428693 GRIN2BQ13224 1484 aa21.32■■□□□ 1
TTC3-208ENST00000428693 CHIC1Q5VXU3 224 aa21.32■■□□□ 1
TTC3-208ENST00000428693 GAPVD1Q14C86 1478 aa21.28■■□□□ 1
TTC3-208ENST00000428693 MAGI1Q96QZ7 1491 aaPredicted RBP21.28■■□□□ 1
TTC3-208ENST00000428693 PBRM1Q86U86 1689 aa21.24■□□□□ 0.99
TTC3-208ENST00000428693 WRNQ14191 1432 aaPredicted RBP eCLIP21.23■□□□□ 0.99
TTC3-208ENST00000428693 SYNJ2O15056 1496 aa21.23■□□□□ 0.99
TTC3-208ENST00000428693 SYNJ1O43426 1573 aa21.23■□□□□ 0.99
TTC3-208ENST00000428693 ABCA10Q8WWZ4 1543 aa21.22■□□□□ 0.99
TTC3-208ENST00000428693 ARAP1Q96P48 1450 aa21.2■□□□□ 0.98
TTC3-208ENST00000428693 ABCA5Q8WWZ7 1642 aa21.17■□□□□ 0.98
TTC3-208ENST00000428693 TOP2BQ02880 1626 aa21.16■□□□□ 0.98
TTC3-208ENST00000428693 CLASP1Q7Z460 1538 aa21.16■□□□□ 0.98
TTC3-208ENST00000428693 TRHP20396 242 aaPredicted RBP21.16■□□□□ 0.98
TTC3-208ENST00000428693 BIVM-ERCC5R4GMW8 1640 aa21.14■□□□□ 0.97
TTC3-208ENST00000428693 GRIN2AQ12879 1464 aa21.04■□□□□ 0.96
TTC3-208ENST00000428693 ADAMTS12P58397 1594 aa21.03■□□□□ 0.96
TTC3-208ENST00000428693 FHAD1B1AJZ9 1412 aa21■□□□□ 0.95
TTC3-208ENST00000428693 ERICH3Q5RHP9 1530 aa20.96■□□□□ 0.95
TTC3-208ENST00000428693 CEP170Q5SW79 1584 aa20.95■□□□□ 0.94
TTC3-208ENST00000428693 NUP160Q12769 1436 aa20.92■□□□□ 0.94
TTC3-208ENST00000428693 ERCC6L2Q5T890 1561 aa20.9■□□□□ 0.94
TTC3-208ENST00000428693 KIF27Q86VH2 1401 aa20.81■□□□□ 0.92
TTC3-208ENST00000428693 PRG4Q92954 1404 aaPredicted RBP20.81■□□□□ 0.92
TTC3-208ENST00000428693 JPH4Q96JJ6 628 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms