RNA–Protein interactions for RNA: ENST00000428683.5

ZNF3-208, Transcript of zinc finger protein 3, humanhuman

TSL 2

Gene ZNF3, Length 999 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF3-208ENST00000428683 NISCHQ9Y2I1 1504 aa25.41■■□□□ 1.66
ZNF3-208ENST00000428683 ABCC9O60706 1549 aa22.74■■□□□ 1.23
ZNF3-208ENST00000428683 CCDC180Q9P1Z9 1646 aa22.62■■□□□ 1.21
ZNF3-208ENST00000428683 DCAF8L2P0C7V8 631 aa21.67■■□□□ 1.06
ZNF3-208ENST00000428683 RB1CC1Q8TDY2 1594 aa21.57■■□□□ 1.04
ZNF3-208ENST00000428683 NACADO15069 1562 aa21.44■■□□□ 1.02
ZNF3-208ENST00000428683 DNAJC5BQ9UF47 199 aa21.33■■□□□ 1.01
ZNF3-208ENST00000428683 PABPN1Q86U42 306 aaKnown RBP eCLIP21.29■■□□□ 1
ZNF3-208ENST00000428683 MYO15BQ96JP2 1530 aa21.14■□□□□ 0.97
ZNF3-208ENST00000428683 ZCCHC6Q5VYS8 1495 aaKnown RBP21.04■□□□□ 0.96
ZNF3-208ENST00000428683 UNC13AQ9UPW8 1703 aa21.01■□□□□ 0.95
ZNF3-208ENST00000428683 BICRAQ9NZM4 1560 aa20.94■□□□□ 0.94
ZNF3-208ENST00000428683 DCAF1Q9Y4B6 1507 aa20.91■□□□□ 0.94
ZNF3-208ENST00000428683 SCRIBQ14160 1630 aa20.75■□□□□ 0.91
ZNF3-208ENST00000428683 SHROOM4Q9ULL8 1493 aa20.58■□□□□ 0.89
ZNF3-208ENST00000428683 CC2D2AQ9P2K1 1620 aa20.46■□□□□ 0.87
ZNF3-208ENST00000428683 CECR2Q9BXF3 1484 aa20.44■□□□□ 0.86
ZNF3-208ENST00000428683 EIF4G1Q04637 1599 aaKnown RBP20.43■□□□□ 0.86
ZNF3-208ENST00000428683 NCAPD3P42695 1498 aa19.85■□□□□ 0.77
ZNF3-208ENST00000428683 ATAD2BQ9ULI0 1458 aa19.81■□□□□ 0.76
ZNF3-208ENST00000428683 SMARCA4P51532 1647 aa19.76■□□□□ 0.75
ZNF3-208ENST00000428683 SMARCA2P51531 1590 aa19.7■□□□□ 0.74
ZNF3-208ENST00000428683 BAZ1AQ9NRL2 1556 aaPredicted RBP19.69■□□□□ 0.74
ZNF3-208ENST00000428683 HMGXB3Q12766 1538 aa19.63■□□□□ 0.73
ZNF3-208ENST00000428683 BAZ1BQ9UIG0 1483 aaKnown RBP19.62■□□□□ 0.73
ZNF3-208ENST00000428683 MROH2BQ7Z745 1585 aa19.61■□□□□ 0.73
ZNF3-208ENST00000428683 ERCC6Q03468 1493 aa19.6■□□□□ 0.73
ZNF3-208ENST00000428683 NESP48681 1621 aa19.55■□□□□ 0.72
ZNF3-208ENST00000428683 PEG3Q9GZU2 1588 aa19.52■□□□□ 0.71
ZNF3-208ENST00000428683 DNAJC5Q9H3Z4 198 aa19.47■□□□□ 0.71
ZNF3-208ENST00000428683 CUX2O14529 1486 aa19.46■□□□□ 0.71
ZNF3-208ENST00000428683 WIZO95785 1651 aa19.36■□□□□ 0.69
ZNF3-208ENST00000428683 LAMC3Q9Y6N6 1575 aa19.32■□□□□ 0.68
ZNF3-208ENST00000428683 PDS5BQ9NTI5 1447 aa19.3■□□□□ 0.68
ZNF3-208ENST00000428683 CADPSQ9ULU8 1353 aa19.3■□□□□ 0.68
ZNF3-208ENST00000428683 RSF1Q96T23 1441 aaPredicted RBP19.26■□□□□ 0.67
ZNF3-208ENST00000428683 THOC2Q8NI27 1593 aaKnown RBP19.21■□□□□ 0.67
ZNF3-208ENST00000428683 KIF21AQ7Z4S6 1674 aa19.19■□□□□ 0.66
ZNF3-208ENST00000428683 MRC2Q9UBG0 1479 aa19.09■□□□□ 0.65
ZNF3-208ENST00000428683 TOP2AP11388 1531 aaKnown RBP19.08■□□□□ 0.64
ZNF3-208ENST00000428683 CFTRP13569 1480 aa19.05■□□□□ 0.64
ZNF3-208ENST00000428683 FANCD2Q9BXW9 1451 aa19.05■□□□□ 0.64
ZNF3-208ENST00000428683 CEP164Q9UPV0 1460 aa19.03■□□□□ 0.64
ZNF3-208ENST00000428683 WDR62O43379 1518 aa19■□□□□ 0.63
ZNF3-208ENST00000428683 CCDC88BA6NC98 1476 aa18.95■□□□□ 0.62
ZNF3-208ENST00000428683 URB2Q14146 1524 aaKnown RBP18.87■□□□□ 0.61
ZNF3-208ENST00000428683 OSCARQ8IYS5 282 aa18.74■□□□□ 0.59
ZNF3-208ENST00000428683 TRIM41Q8WV44 630 aa18.74■□□□□ 0.59
ZNF3-208ENST00000428683 PRDM2Q13029 1718 aa18.69■□□□□ 0.58
ZNF3-208ENST00000428683 TOPBP1Q92547 1522 aa18.68■□□□□ 0.58
ZNF3-208ENST00000428683 IFT140Q96RY7 1462 aa18.66■□□□□ 0.58
ZNF3-208ENST00000428683 SUPT5HO00267 1087 aaKnown RBP18.66■□□□□ 0.58
ZNF3-208ENST00000428683 ZNF608Q9ULD9 1512 aaPredicted RBP18.65■□□□□ 0.58
ZNF3-208ENST00000428683 ABCC8Q09428 1581 aa18.63■□□□□ 0.57
ZNF3-208ENST00000428683 DNMBPQ6XZF7 1577 aa18.58■□□□□ 0.56
ZNF3-208ENST00000428683 AQRO60306 1485 aaKnown RBP eCLIP18.54■□□□□ 0.562e-7■■■■■ 35.8
ZNF3-208ENST00000428683 FBLN2P98095 1184 aa18.5■□□□□ 0.55
ZNF3-208ENST00000428683 POLA1P09884 1462 aaPredicted RBP18.5■□□□□ 0.55
ZNF3-208ENST00000428683 RAD54L2Q9Y4B4 1467 aa18.5■□□□□ 0.55
ZNF3-208ENST00000428683 SOGA1O94964 1423 aa18.49■□□□□ 0.55
ZNF3-208ENST00000428683 TDRD9Q8NDG6 1382 aaKnown RBP18.47■□□□□ 0.55
ZNF3-208ENST00000428683 EIF4G3O43432 1585 aaKnown RBP18.47■□□□□ 0.55
ZNF3-208ENST00000428683 TARBP1Q13395 1621 aaKnown RBP18.46■□□□□ 0.55
ZNF3-208ENST00000428683 FGD5Q6ZNL6 1462 aa18.41■□□□□ 0.54
ZNF3-208ENST00000428683 CUX1P39880 1505 aa18.39■□□□□ 0.54
ZNF3-208ENST00000428683 RIMBP3CA6NJZ7 1639 aa18.34■□□□□ 0.53
ZNF3-208ENST00000428683 RIMBP3BA6NNM3 1639 aa18.34■□□□□ 0.53
ZNF3-208ENST00000428683 RIMBP3Q9UFD9 1639 aa18.34■□□□□ 0.53
ZNF3-208ENST00000428683 CYB5RLQ6IPT4 315 aa18.34■□□□□ 0.53
ZNF3-208ENST00000428683 CHMP7Q8WUX9 453 aaPredicted RBP18.33■□□□□ 0.52
ZNF3-208ENST00000428683 ARHGEF11O15085 1522 aa18.32■□□□□ 0.52
ZNF3-208ENST00000428683 SNAPC4Q5SXM2 1469 aa18.3■□□□□ 0.52
ZNF3-208ENST00000428683 CHD1O14646 1710 aa18.29■□□□□ 0.52
ZNF3-208ENST00000428683 GRIN2BQ13224 1484 aa18.26■□□□□ 0.51
ZNF3-208ENST00000428683 GAPVD1Q14C86 1478 aa18.22■□□□□ 0.51
ZNF3-208ENST00000428683 MAGI1Q96QZ7 1491 aaPredicted RBP18.2■□□□□ 0.5
ZNF3-208ENST00000428683 WDR97A6NE52 1622 aa18.2■□□□□ 0.5
ZNF3-208ENST00000428683 ABCA10Q8WWZ4 1543 aa18.18■□□□□ 0.5
ZNF3-208ENST00000428683 WRNQ14191 1432 aaPredicted RBP eCLIP18.17■□□□□ 0.5
ZNF3-208ENST00000428683 SYNJ2O15056 1496 aa18.17■□□□□ 0.5
ZNF3-208ENST00000428683 ARAP1Q96P48 1450 aa18.16■□□□□ 0.5
ZNF3-208ENST00000428683 SYNJ1O43426 1573 aa18.13■□□□□ 0.49
ZNF3-208ENST00000428683 TRHP20396 242 aaPredicted RBP18.12■□□□□ 0.49
ZNF3-208ENST00000428683 CLASP1Q7Z460 1538 aa18.11■□□□□ 0.49
ZNF3-208ENST00000428683 PBRM1Q86U86 1689 aa18.09■□□□□ 0.49
ZNF3-208ENST00000428683 TOP2BQ02880 1626 aa18.09■□□□□ 0.49
ZNF3-208ENST00000428683 ABCA5Q8WWZ7 1642 aa18.09■□□□□ 0.49
ZNF3-208ENST00000428683 BIVM-ERCC5R4GMW8 1640 aa18.05■□□□□ 0.48
ZNF3-208ENST00000428683 GRIN2AQ12879 1464 aa18.01■□□□□ 0.47
ZNF3-208ENST00000428683 FHAD1B1AJZ9 1412 aa17.99■□□□□ 0.47
ZNF3-208ENST00000428683 ADAMTS12P58397 1594 aa17.96■□□□□ 0.46
ZNF3-208ENST00000428683 NUP160Q12769 1436 aa17.94■□□□□ 0.46
ZNF3-208ENST00000428683 ERICH3Q5RHP9 1530 aa17.93■□□□□ 0.46
ZNF3-208ENST00000428683 CEP170Q5SW79 1584 aa17.92■□□□□ 0.46
ZNF3-208ENST00000428683 ERCC6L2Q5T890 1561 aa17.91■□□□□ 0.46
ZNF3-208ENST00000428683 JPH4Q96JJ6 628 aa17.88■□□□□ 0.45
ZNF3-208ENST00000428683 IGF1RP08069 1367 aa17.84■□□□□ 0.45
ZNF3-208ENST00000428683 KIF27Q86VH2 1401 aa17.82■□□□□ 0.44
ZNF3-208ENST00000428683 PRG4Q92954 1404 aaPredicted RBP17.82■□□□□ 0.44
ZNF3-208ENST00000428683 SHROOM2Q13796 1616 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 98.9 ms