RNA–Protein interactions for RNA: ENST00000428626.5

SEC13-210, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 3

Gene SEC13, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-210ENST00000428626 NISCHQ9Y2I1 1504 aa38.96■■■■□ 3.83
SEC13-210ENST00000428626 CCDC180Q9P1Z9 1646 aa34.86■■■■□ 3.17
SEC13-210ENST00000428626 ABCC9O60706 1549 aa34.81■■■■□ 3.16
SEC13-210ENST00000428626 RB1CC1Q8TDY2 1594 aa33.12■■■□□ 2.89
SEC13-210ENST00000428626 NACADO15069 1562 aa32.92■■■□□ 2.86
SEC13-210ENST00000428626 DCAF8L2P0C7V8 631 aa32.79■■■□□ 2.84
SEC13-210ENST00000428626 DNAJC5BQ9UF47 199 aa32.65■■■□□ 2.82
SEC13-210ENST00000428626 MYO15BQ96JP2 1530 aa32.51■■■□□ 2.8
SEC13-210ENST00000428626 UNC13AQ9UPW8 1703 aa32.46■■■□□ 2.79
SEC13-210ENST00000428626 PABPN1Q86U42 306 aaKnown RBP eCLIP32.45■■■□□ 2.79
SEC13-210ENST00000428626 ZCCHC6Q5VYS8 1495 aaKnown RBP32.33■■■□□ 2.77
SEC13-210ENST00000428626 BICRAQ9NZM4 1560 aa32.26■■■□□ 2.75
SEC13-210ENST00000428626 DCAF1Q9Y4B6 1507 aa32.16■■■□□ 2.74
SEC13-210ENST00000428626 SCRIBQ14160 1630 aa31.82■■■□□ 2.69
SEC13-210ENST00000428626 SHROOM4Q9ULL8 1493 aa31.69■■■□□ 2.66
SEC13-210ENST00000428626 CC2D2AQ9P2K1 1620 aa31.45■■■□□ 2.62
SEC13-210ENST00000428626 EIF4G1Q04637 1599 aaKnown RBP31.4■■■□□ 2.62
SEC13-210ENST00000428626 CECR2Q9BXF3 1484 aa31.32■■■□□ 2.6
SEC13-210ENST00000428626 NCAPD3P42695 1498 aa30.44■■■□□ 2.46
SEC13-210ENST00000428626 ATAD2BQ9ULI0 1458 aa30.38■■■□□ 2.45
SEC13-210ENST00000428626 SMARCA4P51532 1647 aa30.37■■■□□ 2.45
SEC13-210ENST00000428626 SMARCA2P51531 1590 aa30.23■■■□□ 2.43
SEC13-210ENST00000428626 HMGXB3Q12766 1538 aa30.2■■■□□ 2.42
SEC13-210ENST00000428626 BAZ1AQ9NRL2 1556 aaPredicted RBP30.19■■■□□ 2.42
SEC13-210ENST00000428626 MROH2BQ7Z745 1585 aa30.07■■■□□ 2.4
SEC13-210ENST00000428626 PEG3Q9GZU2 1588 aa30.07■■■□□ 2.4
SEC13-210ENST00000428626 BAZ1BQ9UIG0 1483 aaKnown RBP30.05■■■□□ 2.4
SEC13-210ENST00000428626 NESP48681 1621 aa29.99■■■□□ 2.39
SEC13-210ENST00000428626 ERCC6Q03468 1493 aa29.97■■■□□ 2.39
SEC13-210ENST00000428626 CUX2O14529 1486 aa29.89■■■□□ 2.38
SEC13-210ENST00000428626 DNAJC5Q9H3Z4 198 aa29.79■■■□□ 2.36
SEC13-210ENST00000428626 WIZO95785 1651 aa29.7■■■□□ 2.35
SEC13-210ENST00000428626 LAMC3Q9Y6N6 1575 aa29.69■■■□□ 2.34
SEC13-210ENST00000428626 THOC2Q8NI27 1593 aaKnown RBP29.62■■■□□ 2.33
SEC13-210ENST00000428626 KIF21AQ7Z4S6 1674 aa29.56■■■□□ 2.32
SEC13-210ENST00000428626 CADPSQ9ULU8 1353 aa29.51■■■□□ 2.31
SEC13-210ENST00000428626 PDS5BQ9NTI5 1447 aa29.49■■■□□ 2.31
SEC13-210ENST00000428626 RSF1Q96T23 1441 aaPredicted RBP29.47■■■□□ 2.31
SEC13-210ENST00000428626 TOP2AP11388 1531 aaKnown RBP29.29■■■□□ 2.28
SEC13-210ENST00000428626 MRC2Q9UBG0 1479 aa29.27■■■□□ 2.28
SEC13-210ENST00000428626 WDR62O43379 1518 aa29.22■■■□□ 2.27
SEC13-210ENST00000428626 CFTRP13569 1480 aa29.21■■■□□ 2.27
SEC13-210ENST00000428626 FANCD2Q9BXW9 1451 aa29.17■■■□□ 2.26
SEC13-210ENST00000428626 CEP164Q9UPV0 1460 aa29.17■■■□□ 2.26
SEC13-210ENST00000428626 CCDC88BA6NC98 1476 aa28.99■■■□□ 2.23
SEC13-210ENST00000428626 URB2Q14146 1524 aaKnown RBP28.97■■■□□ 2.23
SEC13-210ENST00000428626 PRDM2Q13029 1718 aa28.89■■■□□ 2.22
SEC13-210ENST00000428626 TOPBP1Q92547 1522 aa28.65■■■□□ 2.18
SEC13-210ENST00000428626 ZNF608Q9ULD9 1512 aaPredicted RBP28.61■■■□□ 2.17
SEC13-210ENST00000428626 IFT140Q96RY7 1462 aa28.58■■■□□ 2.17
SEC13-210ENST00000428626 OSCARQ8IYS5 282 aa28.54■■■□□ 2.16
SEC13-210ENST00000428626 DNMBPQ6XZF7 1577 aa28.53■■■□□ 2.16
SEC13-210ENST00000428626 TRIM41Q8WV44 630 aa28.51■■■□□ 2.15
SEC13-210ENST00000428626 ABCC8Q09428 1581 aa28.5■■■□□ 2.15
SEC13-210ENST00000428626 EIF4G3O43432 1585 aaKnown RBP28.41■■■□□ 2.14
SEC13-210ENST00000428626 TARBP1Q13395 1621 aaKnown RBP28.4■■■□□ 2.14
SEC13-210ENST00000428626 POLA1P09884 1462 aaPredicted RBP28.38■■■□□ 2.13
SEC13-210ENST00000428626 AQRO60306 1485 aaKnown RBP eCLIP28.34■■■□□ 2.132e-11■■■□□ 15.3
SEC13-210ENST00000428626 RAD54L2Q9Y4B4 1467 aa28.3■■■□□ 2.12
SEC13-210ENST00000428626 CUX1P39880 1505 aa28.23■■■□□ 2.11
SEC13-210ENST00000428626 SUPT5HO00267 1087 aaKnown RBP28.22■■■□□ 2.11
SEC13-210ENST00000428626 RIMBP3CA6NJZ7 1639 aa28.21■■■□□ 2.11
SEC13-210ENST00000428626 RIMBP3BA6NNM3 1639 aa28.21■■■□□ 2.11
SEC13-210ENST00000428626 RIMBP3Q9UFD9 1639 aa28.21■■■□□ 2.11
SEC13-210ENST00000428626 FGD5Q6ZNL6 1462 aa28.21■■■□□ 2.11
SEC13-210ENST00000428626 SOGA1O94964 1423 aa28.21■■■□□ 2.11
SEC13-210ENST00000428626 CHD1O14646 1710 aa28.18■■■□□ 2.1
SEC13-210ENST00000428626 TDRD9Q8NDG6 1382 aaKnown RBP28.18■■■□□ 2.1
SEC13-210ENST00000428626 ARHGEF11O15085 1522 aa28.13■■■□□ 2.09
SEC13-210ENST00000428626 FBLN2P98095 1184 aa28.06■■■□□ 2.08
SEC13-210ENST00000428626 SNAPC4Q5SXM2 1469 aa28.03■■■□□ 2.08
SEC13-210ENST00000428626 WDR97A6NE52 1622 aa28.03■■■□□ 2.08
SEC13-210ENST00000428626 GRIN2BQ13224 1484 aa27.94■■■□□ 2.06
SEC13-210ENST00000428626 MAGI1Q96QZ7 1491 aaPredicted RBP27.92■■■□□ 2.06
SEC13-210ENST00000428626 CYB5RLQ6IPT4 315 aa27.9■■■□□ 2.06
SEC13-210ENST00000428626 ARAP1Q96P48 1450 aa27.89■■■□□ 2.06
SEC13-210ENST00000428626 CLASP1Q7Z460 1538 aa27.87■■■□□ 2.05
SEC13-210ENST00000428626 ABCA10Q8WWZ4 1543 aa27.87■■■□□ 2.05
SEC13-210ENST00000428626 GAPVD1Q14C86 1478 aa27.87■■■□□ 2.05
SEC13-210ENST00000428626 PBRM1Q86U86 1689 aa27.87■■■□□ 2.05
SEC13-210ENST00000428626 CHMP7Q8WUX9 453 aaPredicted RBP27.86■■■□□ 2.05
SEC13-210ENST00000428626 ABCA5Q8WWZ7 1642 aa27.85■■■□□ 2.05
SEC13-210ENST00000428626 SYNJ2O15056 1496 aa27.84■■■□□ 2.05
SEC13-210ENST00000428626 SYNJ1O43426 1573 aa27.79■■■□□ 2.04
SEC13-210ENST00000428626 BIVM-ERCC5R4GMW8 1640 aa27.78■■■□□ 2.04
SEC13-210ENST00000428626 TOP2BQ02880 1626 aa27.77■■■□□ 2.04
SEC13-210ENST00000428626 WRNQ14191 1432 aaPredicted RBP eCLIP27.75■■■□□ 2.03
SEC13-210ENST00000428626 ADAMTS12P58397 1594 aa27.62■■■□□ 2.01
SEC13-210ENST00000428626 GRIN2AQ12879 1464 aa27.61■■■□□ 2.01
SEC13-210ENST00000428626 CEP170Q5SW79 1584 aa27.54■■■□□ 2
SEC13-210ENST00000428626 NUP160Q12769 1436 aa27.52■■■□□ 2
SEC13-210ENST00000428626 ERCC6L2Q5T890 1561 aa27.52■■■□□ 2
SEC13-210ENST00000428626 FHAD1B1AJZ9 1412 aa27.51■■□□□ 1.99
SEC13-210ENST00000428626 ERICH3Q5RHP9 1530 aa27.51■■□□□ 1.99
SEC13-210ENST00000428626 TRHP20396 242 aaPredicted RBP27.5■■□□□ 1.99
SEC13-210ENST00000428626 SHROOM2Q13796 1616 aa27.39■■□□□ 1.98
SEC13-210ENST00000428626 PRG4Q92954 1404 aaPredicted RBP27.24■■□□□ 1.95
SEC13-210ENST00000428626 IGF1RP08069 1367 aa27.23■■□□□ 1.95
SEC13-210ENST00000428626 RUSC2Q8N2Y8 1516 aa27.23■■□□□ 1.95
SEC13-210ENST00000428626 JPH4Q96JJ6 628 aa27.22■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms