RNA–Protein interactions for RNA: ENST00000428287.6

RIF1-203, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-203ENST00000428287 NISCHQ9Y2I1 1504 aa9.91□□□□□ -0.82
RIF1-203ENST00000428287 HRCP23327 699 aa8.78□□□□□ -1
RIF1-203ENST00000428287 PELP1Q8IZL8 1130 aaKnown RBP8.67□□□□□ -1.02
RIF1-203ENST00000428287 DCAF1Q9Y4B6 1507 aa8.56□□□□□ -1.04
RIF1-203ENST00000428287 MYO15BQ96JP2 1530 aa8.54□□□□□ -1.04
RIF1-203ENST00000428287 CCDC180Q9P1Z9 1646 aa8.5□□□□□ -1.05
RIF1-203ENST00000428287 CHIC1Q5VXU3 224 aa8.46□□□□□ -1.06
RIF1-203ENST00000428287 ZCCHC6Q5VYS8 1495 aaKnown RBP8.45□□□□□ -1.06
RIF1-203ENST00000428287 PCGF6Q9BYE7 350 aa8.4□□□□□ -1.07
RIF1-203ENST00000428287 MYT1Q01538 1121 aa8.38□□□□□ -1.07
RIF1-203ENST00000428287 PPARGC1BQ86YN6 1023 aaKnown RBP8.33□□□□□ -1.08
RIF1-203ENST00000428287 ZEB1P37275 1124 aaPredicted RBP8.29□□□□□ -1.08
RIF1-203ENST00000428287 TRIM26Q12899 539 aaPredicted RBP8.29□□□□□ -1.08
RIF1-203ENST00000428287 SUPT5HO00267 1087 aaKnown RBP8.28□□□□□ -1.08
RIF1-203ENST00000428287 SHROOM4Q9ULL8 1493 aa8.25□□□□□ -1.09
RIF1-203ENST00000428287 SCAF1Q9H7N4 1312 aaKnown RBP8.25□□□□□ -1.09
RIF1-203ENST00000428287 LOC105371045A0A1W2PR82 267 aa8.09□□□□□ -1.11
RIF1-203ENST00000428287 ACIN1Q9UKV3 1341 aaKnown RBP8.07□□□□□ -1.12
RIF1-203ENST00000428287 ABCC9O60706 1549 aa8.06□□□□□ -1.12
RIF1-203ENST00000428287 TTBK1Q5TCY1 1321 aaPredicted RBP8.01□□□□□ -1.13
RIF1-203ENST00000428287 NEUROD1Q13562 356 aa8□□□□□ -1.13
RIF1-203ENST00000428287 RB1CC1Q8TDY2 1594 aa7.95□□□□□ -1.14
RIF1-203ENST00000428287 CENPBP07199 599 aaPredicted RBP7.93□□□□□ -1.14
RIF1-203ENST00000428287 WRNQ14191 1432 aaPredicted RBP eCLIP7.91□□□□□ -1.149e-6■■■■■ 50.1
RIF1-203ENST00000428287 TRIM41Q8WV44 630 aa7.91□□□□□ -1.14
RIF1-203ENST00000428287 GTF3C3Q9Y5Q9 886 aa7.9□□□□□ -1.14
RIF1-203ENST00000428287 RSF1Q96T23 1441 aaPredicted RBP7.89□□□□□ -1.15
RIF1-203ENST00000428287 DIEXFQ68CQ4 756 aaKnown RBP7.87□□□□□ -1.15
RIF1-203ENST00000428287 EIF4G1Q04637 1599 aaKnown RBP7.85□□□□□ -1.15
RIF1-203ENST00000428287 CLSPNQ9HAW4 1339 aa7.85□□□□□ -1.15
RIF1-203ENST00000428287 ZNF316A6NFI3 1004 aaPredicted RBP7.74□□□□□ -1.17
RIF1-203ENST00000428287 CCER1Q8TC90 406 aaPredicted RBP7.74□□□□□ -1.17
RIF1-203ENST00000428287 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.72□□□□□ -1.17
RIF1-203ENST00000428287 BAZ1AQ9NRL2 1556 aaPredicted RBP7.71□□□□□ -1.18
RIF1-203ENST00000428287 WIZO95785 1651 aa7.7□□□□□ -1.18
RIF1-203ENST00000428287 EEA1Q15075 1411 aa7.68□□□□□ -1.18
RIF1-203ENST00000428287 NACADO15069 1562 aa7.67□□□□□ -1.18
RIF1-203ENST00000428287 TNIKQ9UKE5 1360 aa7.65□□□□□ -1.18
RIF1-203ENST00000428287 MROH2BQ7Z745 1585 aa7.65□□□□□ -1.19
RIF1-203ENST00000428287 SCRIBQ14160 1630 aa7.64□□□□□ -1.19
RIF1-203ENST00000428287 MIER1Q8N108 512 aa7.63□□□□□ -1.19
RIF1-203ENST00000428287 CEP162Q5TB80 1403 aa7.63□□□□□ -1.19
RIF1-203ENST00000428287 ANP32EQ9BTT0 268 aa7.62□□□□□ -1.19
RIF1-203ENST00000428287 UNC13AQ9UPW8 1703 aa7.61□□□□□ -1.19
RIF1-203ENST00000428287 KIF21BO75037 1637 aa7.61□□□□□ -1.19
RIF1-203ENST00000428287 BCL11AQ9H165 835 aa7.6□□□□□ -1.19
RIF1-203ENST00000428287 CECR2Q9BXF3 1484 aa7.59□□□□□ -1.2
RIF1-203ENST00000428287 DCAF8L2P0C7V8 631 aa7.58□□□□□ -1.2
RIF1-203ENST00000428287 SUPT16HQ9Y5B9 1047 aaKnown RBP7.57□□□□□ -1.2
RIF1-203ENST00000428287 TSHZ2Q9NRE2 1034 aa7.57□□□□□ -1.2
RIF1-203ENST00000428287 FAM9AQ8IZU1 332 aaPredicted RBP7.56□□□□□ -1.2
RIF1-203ENST00000428287 CCDC88BA6NC98 1476 aa7.56□□□□□ -1.2
RIF1-203ENST00000428287 CUX2O14529 1486 aa7.54□□□□□ -1.2
RIF1-203ENST00000428287 SMARCA2P51531 1590 aa7.54□□□□□ -1.2
RIF1-203ENST00000428287 TOP2AP11388 1531 aaKnown RBP7.53□□□□□ -1.2
RIF1-203ENST00000428287 BAZ1BQ9UIG0 1483 aaKnown RBP7.52□□□□□ -1.21
RIF1-203ENST00000428287 VPS8Q8N3P4 1428 aa7.51□□□□□ -1.21
RIF1-203ENST00000428287 ABCC8Q09428 1581 aa7.51□□□□□ -1.21
RIF1-203ENST00000428287 GOLGA3Q08378 1498 aa7.5□□□□□ -1.21
RIF1-203ENST00000428287 SMARCA4P51532 1647 aa7.5□□□□□ -1.21
RIF1-203ENST00000428287 PEG3Q9GZU2 1588 aa7.5□□□□□ -1.21
RIF1-203ENST00000428287 POLR1AO95602 1720 aaPredicted RBP7.48□□□□□ -1.21
RIF1-203ENST00000428287 CLIP1P30622 1438 aa7.48□□□□□ -1.21
RIF1-203ENST00000428287 CSRNP3Q8WYN3 585 aa7.48□□□□□ -1.21
RIF1-203ENST00000428287 SYNJ1O43426 1573 aa7.47□□□□□ -1.21
RIF1-203ENST00000428287 CEP164Q9UPV0 1460 aa7.47□□□□□ -1.21
RIF1-203ENST00000428287 SOGA1O94964 1423 aa7.46□□□□□ -1.21
RIF1-203ENST00000428287 DHX57Q6P158 1386 aaKnown RBP7.45□□□□□ -1.22
RIF1-203ENST00000428287 RUSC2Q8N2Y8 1516 aa7.44□□□□□ -1.22
RIF1-203ENST00000428287 FANCIQ9NVI1 1328 aa7.42□□□□□ -1.22
RIF1-203ENST00000428287 ERICH3Q5RHP9 1530 aa7.42□□□□□ -1.22
RIF1-203ENST00000428287 RRBP1Q9P2E9 1410 aaKnown RBP7.41□□□□□ -1.22
RIF1-203ENST00000428287 YTHDC1Q96MU7 727 aaKnown RBP7.41□□□□□ -1.22
RIF1-203ENST00000428287 MYT1LQ9UL68 1186 aa7.41□□□□□ -1.22
RIF1-203ENST00000428287 RBM19Q9Y4C8 960 aaKnown RBP7.4□□□□□ -1.23
RIF1-203ENST00000428287 MAP3K1Q13233 1512 aa7.39□□□□□ -1.23
RIF1-203ENST00000428287 BIVM-ERCC5R4GMW8 1640 aa7.38□□□□□ -1.23
RIF1-203ENST00000428287 TIMELESSQ9UNS1 1208 aa7.36□□□□□ -1.23
RIF1-203ENST00000428287 MAPKBP1O60336 1514 aa7.36□□□□□ -1.23
RIF1-203ENST00000428287 PRDM2Q13029 1718 aa7.35□□□□□ -1.23
RIF1-203ENST00000428287 TOP2BQ02880 1626 aa7.35□□□□□ -1.23
RIF1-203ENST00000428287 ERICH6BQ5W0A0 696 aa7.35□□□□□ -1.23
RIF1-203ENST00000428287 PRXQ9BXM0 1461 aa7.35□□□□□ -1.23
RIF1-203ENST00000428287 WDR97A6NE52 1622 aa7.34□□□□□ -1.23
RIF1-203ENST00000428287 PRKCSHP14314 528 aaPredicted RBP7.34□□□□□ -1.23
RIF1-203ENST00000428287 RAPGEF2Q9Y4G8 1499 aa7.33□□□□□ -1.24
RIF1-203ENST00000428287 MSH5O43196 834 aa7.33□□□□□ -1.24
RIF1-203ENST00000428287 CCER2I3L3R5 266 aa7.33□□□□□ -1.24
RIF1-203ENST00000428287 APLP2Q06481 763 aa7.33□□□□□ -1.24
RIF1-203ENST00000428287 VIRMAQ69YN4 1812 aaKnown RBP7.32□□□□□ -1.24
RIF1-203ENST00000428287 UBTFP17480 764 aaKnown RBP7.31□□□□□ -1.24
RIF1-203ENST00000428287 HNRNPUL2Q1KMD3 747 aaKnown RBP7.31□□□□□ -1.24
RIF1-203ENST00000428287 PPP1R15AO75807 674 aaPredicted RBP7.29□□□□□ -1.24
RIF1-203ENST00000428287 CCNB3Q8WWL7 1395 aa7.29□□□□□ -1.24
RIF1-203ENST00000428287 EHMT2Q96KQ7 1210 aa7.29□□□□□ -1.24
RIF1-203ENST00000428287 KCNH8Q96L42 1107 aa7.28□□□□□ -1.24
RIF1-203ENST00000428287 ARAP1Q96P48 1450 aa7.28□□□□□ -1.24
RIF1-203ENST00000428287 ERICH6Q7L0X2 663 aa7.27□□□□□ -1.25
RIF1-203ENST00000428287 CFAP43Q8NDM7 1665 aa7.27□□□□□ -1.25
RIF1-203ENST00000428287 TCHHQ07283 1943 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms