RNA–Protein interactions for RNA: ENST00000428082.6

TVP23C-203, Transcript of trans-golgi network vesicle protein 23 homolog C, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene TVP23C, Length 1,911 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TVP23C-203ENST00000428082 NISCHQ9Y2I1 1504 aa35.67■■■■□ 3.3
TVP23C-203ENST00000428082 CCDC180Q9P1Z9 1646 aa31.35■■■□□ 2.61
TVP23C-203ENST00000428082 ABCC9O60706 1549 aa30.06■■■□□ 2.4
TVP23C-203ENST00000428082 ZCCHC6Q5VYS8 1495 aaKnown RBP29.87■■■□□ 2.37
TVP23C-203ENST00000428082 DCAF8L2P0C7V8 631 aa29.59■■■□□ 2.33
TVP23C-203ENST00000428082 DCAF1Q9Y4B6 1507 aa29.49■■■□□ 2.31
TVP23C-203ENST00000428082 MYO15BQ96JP2 1530 aa29.32■■■□□ 2.28
TVP23C-203ENST00000428082 NACADO15069 1562 aa29.29■■■□□ 2.28
TVP23C-203ENST00000428082 RB1CC1Q8TDY2 1594 aa29.16■■■□□ 2.26
TVP23C-203ENST00000428082 SHROOM4Q9ULL8 1493 aa28.76■■■□□ 2.19
TVP23C-203ENST00000428082 SCRIBQ14160 1630 aa28.75■■■□□ 2.19
TVP23C-203ENST00000428082 UNC13AQ9UPW8 1703 aa28.6■■■□□ 2.17
TVP23C-203ENST00000428082 BICRAQ9NZM4 1560 aa28.31■■■□□ 2.12
TVP23C-203ENST00000428082 PABPN1Q86U42 306 aaKnown RBP eCLIP28.24■■■□□ 2.11
TVP23C-203ENST00000428082 CECR2Q9BXF3 1484 aa27.77■■■□□ 2.04
TVP23C-203ENST00000428082 BAZ1AQ9NRL2 1556 aaPredicted RBP27.58■■■□□ 2.01
TVP23C-203ENST00000428082 MROH2BQ7Z745 1585 aa27.55■■■□□ 2
TVP23C-203ENST00000428082 SMARCA4P51532 1647 aa27.54■■■□□ 2
TVP23C-203ENST00000428082 RSF1Q96T23 1441 aaPredicted RBP27.49■■□□□ 1.99
TVP23C-203ENST00000428082 EIF4G1Q04637 1599 aaKnown RBP27.48■■□□□ 1.99
TVP23C-203ENST00000428082 SUPT5HO00267 1087 aaKnown RBP27.41■■□□□ 1.98
TVP23C-203ENST00000428082 WIZO95785 1651 aa27.32■■□□□ 1.96
TVP23C-203ENST00000428082 PEG3Q9GZU2 1588 aa27.22■■□□□ 1.95
TVP23C-203ENST00000428082 CC2D2AQ9P2K1 1620 aa27.21■■□□□ 1.95
TVP23C-203ENST00000428082 ATAD2BQ9ULI0 1458 aa27.19■■□□□ 1.94
TVP23C-203ENST00000428082 SMARCA2P51531 1590 aa27.16■■□□□ 1.94
TVP23C-203ENST00000428082 NCAPD3P42695 1498 aa27.03■■□□□ 1.92
TVP23C-203ENST00000428082 BAZ1BQ9UIG0 1483 aaKnown RBP27.01■■□□□ 1.91
TVP23C-203ENST00000428082 TOP2AP11388 1531 aaKnown RBP27■■□□□ 1.91
TVP23C-203ENST00000428082 HMGXB3Q12766 1538 aa26.96■■□□□ 1.91
TVP23C-203ENST00000428082 DNAJC5BQ9UF47 199 aa26.95■■□□□ 1.9
TVP23C-203ENST00000428082 CCDC88BA6NC98 1476 aa26.71■■□□□ 1.87
TVP23C-203ENST00000428082 CFTRP13569 1480 aa26.3■■□□□ 1.8
TVP23C-203ENST00000428082 CADPSQ9ULU8 1353 aa26.3■■□□□ 1.8
TVP23C-203ENST00000428082 NESP48681 1621 aa26.25■■□□□ 1.79
TVP23C-203ENST00000428082 LAMC3Q9Y6N6 1575 aa26.2■■□□□ 1.79
TVP23C-203ENST00000428082 PRDM2Q13029 1718 aa26.18■■□□□ 1.78
TVP23C-203ENST00000428082 CHIC1Q5VXU3 224 aa26.11■■□□□ 1.77
TVP23C-203ENST00000428082 FANCD2Q9BXW9 1451 aa26.02■■□□□ 1.76
TVP23C-203ENST00000428082 ABCC8Q09428 1581 aa26.01■■□□□ 1.75
TVP23C-203ENST00000428082 PDS5BQ9NTI5 1447 aa25.99■■□□□ 1.75
TVP23C-203ENST00000428082 KIF21AQ7Z4S6 1674 aa25.95■■□□□ 1.75
TVP23C-203ENST00000428082 CEP164Q9UPV0 1460 aa25.9■■□□□ 1.74
TVP23C-203ENST00000428082 WRNQ14191 1432 aaPredicted RBP eCLIP25.88■■□□□ 1.73
TVP23C-203ENST00000428082 SYNJ1O43426 1573 aa25.82■■□□□ 1.72
TVP23C-203ENST00000428082 ERCC6Q03468 1493 aa25.81■■□□□ 1.72
TVP23C-203ENST00000428082 TRIM41Q8WV44 630 aa25.8■■□□□ 1.72
TVP23C-203ENST00000428082 CUX1P39880 1505 aa25.79■■□□□ 1.72
TVP23C-203ENST00000428082 TOP2BQ02880 1626 aa25.75■■□□□ 1.71
TVP23C-203ENST00000428082 BIVM-ERCC5R4GMW8 1640 aa25.73■■□□□ 1.71
TVP23C-203ENST00000428082 URB2Q14146 1524 aaKnown RBP25.73■■□□□ 1.71
TVP23C-203ENST00000428082 DNMBPQ6XZF7 1577 aa25.7■■□□□ 1.71
TVP23C-203ENST00000428082 MRC2Q9UBG0 1479 aa25.7■■□□□ 1.7
TVP23C-203ENST00000428082 TOPBP1Q92547 1522 aa25.69■■□□□ 1.7
TVP23C-203ENST00000428082 THOC2Q8NI27 1593 aaKnown RBP25.65■■□□□ 1.7
TVP23C-203ENST00000428082 WDR62O43379 1518 aa25.59■■□□□ 1.69
TVP23C-203ENST00000428082 FGD5Q6ZNL6 1462 aa25.58■■□□□ 1.69
TVP23C-203ENST00000428082 POLA1P09884 1462 aaPredicted RBP25.53■■□□□ 1.68
TVP23C-203ENST00000428082 RAD54L2Q9Y4B4 1467 aa25.44■■□□□ 1.66
TVP23C-203ENST00000428082 SOGA1O94964 1423 aa25.42■■□□□ 1.66
TVP23C-203ENST00000428082 CUX2O14529 1486 aa25.41■■□□□ 1.66
TVP23C-203ENST00000428082 TARBP1Q13395 1621 aaKnown RBP25.36■■□□□ 1.65
TVP23C-203ENST00000428082 RUSC2Q8N2Y8 1516 aa25.36■■□□□ 1.65
TVP23C-203ENST00000428082 WDR97A6NE52 1622 aa25.33■■□□□ 1.65
TVP23C-203ENST00000428082 ABCA10Q8WWZ4 1543 aa25.33■■□□□ 1.65
TVP23C-203ENST00000428082 FAM9AQ8IZU1 332 aaPredicted RBP25.33■■□□□ 1.65
TVP23C-203ENST00000428082 IFT140Q96RY7 1462 aa25.3■■□□□ 1.64
TVP23C-203ENST00000428082 KIF27Q86VH2 1401 aa25.26■■□□□ 1.63
TVP23C-203ENST00000428082 TDRD9Q8NDG6 1382 aaKnown RBP25.23■■□□□ 1.63
TVP23C-203ENST00000428082 EEA1Q15075 1411 aa25.23■■□□□ 1.63
TVP23C-203ENST00000428082 ZNF608Q9ULD9 1512 aaPredicted RBP25.21■■□□□ 1.63
TVP23C-203ENST00000428082 ABCA5Q8WWZ7 1642 aa25.19■■□□□ 1.62
TVP23C-203ENST00000428082 AQRO60306 1485 aaKnown RBP eCLIP25.16■■□□□ 1.62
TVP23C-203ENST00000428082 CSRNP3Q8WYN3 585 aa25.15■■□□□ 1.62
TVP23C-203ENST00000428082 GAPVD1Q14C86 1478 aa25.15■■□□□ 1.62
TVP23C-203ENST00000428082 LOC105371045A0A1W2PR82 267 aa25.13■■□□□ 1.61
TVP23C-203ENST00000428082 EIF4G3O43432 1585 aaKnown RBP25.11■■□□□ 1.61
TVP23C-203ENST00000428082 IGF1RP08069 1367 aa25.09■■□□□ 1.61
TVP23C-203ENST00000428082 HRCP23327 699 aa25.09■■□□□ 1.61
TVP23C-203ENST00000428082 PBRM1Q86U86 1689 aa25.07■■□□□ 1.6
TVP23C-203ENST00000428082 ERICH3Q5RHP9 1530 aa25.04■■□□□ 1.6
TVP23C-203ENST00000428082 PCGF6Q9BYE7 350 aa25.03■■□□□ 1.6
TVP23C-203ENST00000428082 GRIN2BQ13224 1484 aa25.01■■□□□ 1.59
TVP23C-203ENST00000428082 EHMT2Q96KQ7 1210 aa25■■□□□ 1.59
TVP23C-203ENST00000428082 PRXQ9BXM0 1461 aa24.98■■□□□ 1.59
TVP23C-203ENST00000428082 KIF21BO75037 1637 aa24.97■■□□□ 1.59
TVP23C-203ENST00000428082 CUL7Q14999 1698 aa24.96■■□□□ 1.59
TVP23C-203ENST00000428082 CARMIL1Q5VZK9 1371 aa24.95■■□□□ 1.59
TVP23C-203ENST00000428082 SNAPC4Q5SXM2 1469 aa24.92■■□□□ 1.58
TVP23C-203ENST00000428082 RAPGEF2Q9Y4G8 1499 aa24.91■■□□□ 1.58
TVP23C-203ENST00000428082 ADAMTS12P58397 1594 aa24.89■■□□□ 1.57
TVP23C-203ENST00000428082 GOLGA3Q08378 1498 aa24.88■■□□□ 1.57
TVP23C-203ENST00000428082 MAGI1Q96QZ7 1491 aaPredicted RBP24.86■■□□□ 1.57
TVP23C-203ENST00000428082 FHAD1B1AJZ9 1412 aa24.85■■□□□ 1.57
TVP23C-203ENST00000428082 TRIM26Q12899 539 aaPredicted RBP24.84■■□□□ 1.57
TVP23C-203ENST00000428082 UBTFP17480 764 aaKnown RBP24.78■■□□□ 1.56
TVP23C-203ENST00000428082 SYNJ2O15056 1496 aa24.77■■□□□ 1.56
TVP23C-203ENST00000428082 CHMP7Q8WUX9 453 aaPredicted RBP24.73■■□□□ 1.55
TVP23C-203ENST00000428082 FBLN2P98095 1184 aa24.72■■□□□ 1.55
TVP23C-203ENST00000428082 GRIN2AQ12879 1464 aa24.72■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms