RNA–Protein interactions for RNA: ENST00000427897.1

HSPG2-205, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 5

Gene HSPG2, Length 589 nt, Biotype non stop decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-205ENST00000427897 NISCHQ9Y2I1 1504 aa50.37■■■■■ 5.65
HSPG2-205ENST00000427897 CCDC180Q9P1Z9 1646 aa44.93■■■■■ 4.78
HSPG2-205ENST00000427897 ABCC9O60706 1549 aa44.43■■■■■ 4.7
HSPG2-205ENST00000427897 DCAF8L2P0C7V8 631 aa42.58■■■■■ 4.41
HSPG2-205ENST00000427897 RB1CC1Q8TDY2 1594 aa42.55■■■■■ 4.4
HSPG2-205ENST00000427897 NACADO15069 1562 aa42.37■■■■■ 4.37
HSPG2-205ENST00000427897 MYO15BQ96JP2 1530 aa41.9■■■■■ 4.3
HSPG2-205ENST00000427897 ZCCHC6Q5VYS8 1495 aaKnown RBP41.83■■■■■ 4.29
HSPG2-205ENST00000427897 DCAF1Q9Y4B6 1507 aa41.59■■■■■ 4.25
HSPG2-205ENST00000427897 UNC13AQ9UPW8 1703 aa41.51■■■■■ 4.24
HSPG2-205ENST00000427897 PABPN1Q86U42 306 aaKnown RBP eCLIP41.5■■■■■ 4.23
HSPG2-205ENST00000427897 BICRAQ9NZM4 1560 aa41.14■■■■■ 4.18
HSPG2-205ENST00000427897 SCRIBQ14160 1630 aa41.05■■■■■ 4.16
HSPG2-205ENST00000427897 DNAJC5BQ9UF47 199 aa41.03■■■■■ 4.16
HSPG2-205ENST00000427897 SHROOM4Q9ULL8 1493 aa40.7■■■■■ 4.11
HSPG2-205ENST00000427897 EIF4G1Q04637 1599 aaKnown RBP40.16■■■■■ 4.02
HSPG2-205ENST00000427897 CC2D2AQ9P2K1 1620 aa40.12■■■■■ 4.01
HSPG2-205ENST00000427897 CECR2Q9BXF3 1484 aa39.94■■■■□ 3.98
HSPG2-205ENST00000427897 SMARCA4P51532 1647 aa39.17■■■■□ 3.86
HSPG2-205ENST00000427897 BAZ1AQ9NRL2 1556 aaPredicted RBP39.11■■■■□ 3.85
HSPG2-205ENST00000427897 NCAPD3P42695 1498 aa39.06■■■■□ 3.84
HSPG2-205ENST00000427897 ATAD2BQ9ULI0 1458 aa39.05■■■■□ 3.84
HSPG2-205ENST00000427897 SMARCA2P51531 1590 aa39.03■■■■□ 3.84
HSPG2-205ENST00000427897 HMGXB3Q12766 1538 aa38.83■■■■□ 3.81
HSPG2-205ENST00000427897 MROH2BQ7Z745 1585 aa38.82■■■■□ 3.8
HSPG2-205ENST00000427897 BAZ1BQ9UIG0 1483 aaKnown RBP38.78■■■■□ 3.8
HSPG2-205ENST00000427897 PEG3Q9GZU2 1588 aa38.71■■■■□ 3.79
HSPG2-205ENST00000427897 WIZO95785 1651 aa38.42■■■■□ 3.74
HSPG2-205ENST00000427897 ERCC6Q03468 1493 aa38.4■■■■□ 3.74
HSPG2-205ENST00000427897 NESP48681 1621 aa38.27■■■■□ 3.72
HSPG2-205ENST00000427897 RSF1Q96T23 1441 aaPredicted RBP38.24■■■■□ 3.71
HSPG2-205ENST00000427897 LAMC3Q9Y6N6 1575 aa38.14■■■■□ 3.7
HSPG2-205ENST00000427897 CUX2O14529 1486 aa38■■■■□ 3.67
HSPG2-205ENST00000427897 PDS5BQ9NTI5 1447 aa37.96■■■■□ 3.67
HSPG2-205ENST00000427897 CADPSQ9ULU8 1353 aa37.96■■■■□ 3.67
HSPG2-205ENST00000427897 TOP2AP11388 1531 aaKnown RBP37.96■■■■□ 3.67
HSPG2-205ENST00000427897 KIF21AQ7Z4S6 1674 aa37.82■■■■□ 3.65
HSPG2-205ENST00000427897 THOC2Q8NI27 1593 aaKnown RBP37.72■■■■□ 3.63
HSPG2-205ENST00000427897 CFTRP13569 1480 aa37.61■■■■□ 3.61
HSPG2-205ENST00000427897 CEP164Q9UPV0 1460 aa37.56■■■■□ 3.6
HSPG2-205ENST00000427897 CCDC88BA6NC98 1476 aa37.54■■■■□ 3.6
HSPG2-205ENST00000427897 FANCD2Q9BXW9 1451 aa37.54■■■■□ 3.6
HSPG2-205ENST00000427897 MRC2Q9UBG0 1479 aa37.54■■■■□ 3.6
HSPG2-205ENST00000427897 WDR62O43379 1518 aa37.36■■■■□ 3.57
HSPG2-205ENST00000427897 PRDM2Q13029 1718 aa37.33■■■■□ 3.57
HSPG2-205ENST00000427897 DNAJC5Q9H3Z4 198 aa37.31■■■■□ 3.56
HSPG2-205ENST00000427897 SUPT5HO00267 1087 aaKnown RBP37.25■■■■□ 3.55
HSPG2-205ENST00000427897 URB2Q14146 1524 aaKnown RBP37.13■■■■□ 3.53
HSPG2-205ENST00000427897 ABCC8Q09428 1581 aa36.91■■■■□ 3.5
HSPG2-205ENST00000427897 TOPBP1Q92547 1522 aa36.87■■■■□ 3.49
HSPG2-205ENST00000427897 DNMBPQ6XZF7 1577 aa36.8■■■■□ 3.48
HSPG2-205ENST00000427897 IFT140Q96RY7 1462 aa36.75■■■■□ 3.47
HSPG2-205ENST00000427897 ZNF608Q9ULD9 1512 aaPredicted RBP36.59■■■■□ 3.45
HSPG2-205ENST00000427897 POLA1P09884 1462 aaPredicted RBP36.52■■■■□ 3.44
HSPG2-205ENST00000427897 OSCARQ8IYS5 282 aa36.5■■■■□ 3.43
HSPG2-205ENST00000427897 SOGA1O94964 1423 aa36.47■■■■□ 3.43
HSPG2-205ENST00000427897 TARBP1Q13395 1621 aaKnown RBP36.45■■■■□ 3.43
HSPG2-205ENST00000427897 EIF4G3O43432 1585 aaKnown RBP36.43■■■■□ 3.42
HSPG2-205ENST00000427897 CUX1P39880 1505 aa36.43■■■■□ 3.42
HSPG2-205ENST00000427897 FGD5Q6ZNL6 1462 aa36.41■■■■□ 3.42
HSPG2-205ENST00000427897 RAD54L2Q9Y4B4 1467 aa36.41■■■■□ 3.42
HSPG2-205ENST00000427897 AQRO60306 1485 aaKnown RBP eCLIP36.39■■■■□ 3.428e-8■■■■■ 36.2
HSPG2-205ENST00000427897 TDRD9Q8NDG6 1382 aaKnown RBP36.29■■■■□ 3.4
HSPG2-205ENST00000427897 FBLN2P98095 1184 aa36.23■■■■□ 3.39
HSPG2-205ENST00000427897 WDR97A6NE52 1622 aa36.16■■■■□ 3.38
HSPG2-205ENST00000427897 WRNQ14191 1432 aaPredicted RBP eCLIP36.13■■■■□ 3.37
HSPG2-205ENST00000427897 TRIM41Q8WV44 630 aa36.09■■■■□ 3.37
HSPG2-205ENST00000427897 CHD1O14646 1710 aa36.08■■■■□ 3.37
HSPG2-205ENST00000427897 GRIN2BQ13224 1484 aa36.05■■■■□ 3.36
HSPG2-205ENST00000427897 TOP2BQ02880 1626 aa36.04■■■■□ 3.36
HSPG2-205ENST00000427897 SNAPC4Q5SXM2 1469 aa36.03■■■■□ 3.36
HSPG2-205ENST00000427897 BIVM-ERCC5R4GMW8 1640 aa36.02■■■■□ 3.36
HSPG2-205ENST00000427897 CHMP7Q8WUX9 453 aaPredicted RBP36.01■■■■□ 3.36
HSPG2-205ENST00000427897 ABCA10Q8WWZ4 1543 aa36.01■■■■□ 3.36
HSPG2-205ENST00000427897 GAPVD1Q14C86 1478 aa36■■■■□ 3.35
HSPG2-205ENST00000427897 SYNJ1O43426 1573 aa35.99■■■■□ 3.35
HSPG2-205ENST00000427897 MAGI1Q96QZ7 1491 aaPredicted RBP35.96■■■■□ 3.35
HSPG2-205ENST00000427897 PBRM1Q86U86 1689 aa35.93■■■■□ 3.34
HSPG2-205ENST00000427897 ABCA5Q8WWZ7 1642 aa35.86■■■■□ 3.33
HSPG2-205ENST00000427897 RIMBP3CA6NJZ7 1639 aa35.83■■■■□ 3.33
HSPG2-205ENST00000427897 RIMBP3BA6NNM3 1639 aa35.83■■■■□ 3.33
HSPG2-205ENST00000427897 RIMBP3Q9UFD9 1639 aa35.83■■■■□ 3.33
HSPG2-205ENST00000427897 SYNJ2O15056 1496 aa35.83■■■■□ 3.33
HSPG2-205ENST00000427897 ARHGEF11O15085 1522 aa35.77■■■■□ 3.32
HSPG2-205ENST00000427897 CYB5RLQ6IPT4 315 aa35.63■■■■□ 3.29
HSPG2-205ENST00000427897 ERICH3Q5RHP9 1530 aa35.59■■■■□ 3.29
HSPG2-205ENST00000427897 CLASP1Q7Z460 1538 aa35.59■■■■□ 3.29
HSPG2-205ENST00000427897 FHAD1B1AJZ9 1412 aa35.57■■■■□ 3.28
HSPG2-205ENST00000427897 ADAMTS12P58397 1594 aa35.56■■■■□ 3.28
HSPG2-205ENST00000427897 GRIN2AQ12879 1464 aa35.54■■■■□ 3.28
HSPG2-205ENST00000427897 KIF27Q86VH2 1401 aa35.44■■■■□ 3.26
HSPG2-205ENST00000427897 ARAP1Q96P48 1450 aa35.43■■■■□ 3.26
HSPG2-205ENST00000427897 CEP170Q5SW79 1584 aa35.36■■■■□ 3.25
HSPG2-205ENST00000427897 NUP160Q12769 1436 aa35.34■■■■□ 3.25
HSPG2-205ENST00000427897 IGF1RP08069 1367 aa35.28■■■■□ 3.24
HSPG2-205ENST00000427897 CUL7Q14999 1698 aa35.22■■■■□ 3.23
HSPG2-205ENST00000427897 JPH4Q96JJ6 628 aa35.15■■■■□ 3.22
HSPG2-205ENST00000427897 TRHP20396 242 aaPredicted RBP35.14■■■■□ 3.22
HSPG2-205ENST00000427897 CARMIL1Q5VZK9 1371 aa35.13■■■■□ 3.21
HSPG2-205ENST00000427897 SHROOM2Q13796 1616 aa35.1■■■■□ 3.21
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms