RNA–Protein interactions for RNA: ENST00000427007.5

HDLBP-213, Transcript of high density lipoprotein binding protein, humanhuman

TSL 3

Gene HDLBP, Length 459 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDLBP-213ENST00000427007 NISCHQ9Y2I1 1504 aa25.66■■□□□ 1.7
HDLBP-213ENST00000427007 ABCC9O60706 1549 aa23.08■■□□□ 1.28
HDLBP-213ENST00000427007 CCDC180Q9P1Z9 1646 aa23.05■■□□□ 1.28
HDLBP-213ENST00000427007 RB1CC1Q8TDY2 1594 aa21.94■■□□□ 1.1
HDLBP-213ENST00000427007 NACADO15069 1562 aa21.76■■□□□ 1.07
HDLBP-213ENST00000427007 DCAF8L2P0C7V8 631 aa21.69■■□□□ 1.06
HDLBP-213ENST00000427007 DNAJC5BQ9UF47 199 aa21.61■■□□□ 1.05
HDLBP-213ENST00000427007 UNC13AQ9UPW8 1703 aa21.51■■□□□ 1.03
HDLBP-213ENST00000427007 PABPN1Q86U42 306 aaKnown RBP eCLIP21.46■■□□□ 1.03
HDLBP-213ENST00000427007 MYO15BQ96JP2 1530 aa21.42■■□□□ 1.02
HDLBP-213ENST00000427007 BICRAQ9NZM4 1560 aa21.31■■□□□ 1
HDLBP-213ENST00000427007 ZCCHC6Q5VYS8 1495 aaKnown RBP21.27■■□□□ 1
HDLBP-213ENST00000427007 DCAF1Q9Y4B6 1507 aa21.16■□□□□ 0.98
HDLBP-213ENST00000427007 SCRIBQ14160 1630 aa21.04■□□□□ 0.96
HDLBP-213ENST00000427007 SHROOM4Q9ULL8 1493 aa20.95■□□□□ 0.94
HDLBP-213ENST00000427007 CC2D2AQ9P2K1 1620 aa20.85■□□□□ 0.93
HDLBP-213ENST00000427007 EIF4G1Q04637 1599 aaKnown RBP20.79■□□□□ 0.92
HDLBP-213ENST00000427007 CECR2Q9BXF3 1484 aa20.75■□□□□ 0.91
HDLBP-213ENST00000427007 NCAPD3P42695 1498 aa20.07■□□□□ 0.8
HDLBP-213ENST00000427007 SMARCA4P51532 1647 aa20.05■□□□□ 0.8
HDLBP-213ENST00000427007 ATAD2BQ9ULI0 1458 aa20.03■□□□□ 0.8
HDLBP-213ENST00000427007 SMARCA2P51531 1590 aa19.98■□□□□ 0.79
HDLBP-213ENST00000427007 HMGXB3Q12766 1538 aa19.95■□□□□ 0.78
HDLBP-213ENST00000427007 BAZ1AQ9NRL2 1556 aaPredicted RBP19.92■□□□□ 0.78
HDLBP-213ENST00000427007 ERCC6Q03468 1493 aa19.91■□□□□ 0.78
HDLBP-213ENST00000427007 BAZ1BQ9UIG0 1483 aaKnown RBP19.86■□□□□ 0.77
HDLBP-213ENST00000427007 CUX2O14529 1486 aa19.84■□□□□ 0.77
HDLBP-213ENST00000427007 NESP48681 1621 aa19.82■□□□□ 0.76
HDLBP-213ENST00000427007 DNAJC5Q9H3Z4 198 aa19.81■□□□□ 0.76
HDLBP-213ENST00000427007 PEG3Q9GZU2 1588 aa19.81■□□□□ 0.76
HDLBP-213ENST00000427007 MROH2BQ7Z745 1585 aa19.79■□□□□ 0.76
HDLBP-213ENST00000427007 LAMC3Q9Y6N6 1575 aa19.66■□□□□ 0.74
HDLBP-213ENST00000427007 THOC2Q8NI27 1593 aaKnown RBP19.63■□□□□ 0.73
HDLBP-213ENST00000427007 KIF21AQ7Z4S6 1674 aa19.6■□□□□ 0.73
HDLBP-213ENST00000427007 WIZO95785 1651 aa19.59■□□□□ 0.73
HDLBP-213ENST00000427007 PDS5BQ9NTI5 1447 aa19.51■□□□□ 0.71
HDLBP-213ENST00000427007 CADPSQ9ULU8 1353 aa19.46■□□□□ 0.71
HDLBP-213ENST00000427007 MRC2Q9UBG0 1479 aa19.37■□□□□ 0.69
HDLBP-213ENST00000427007 RSF1Q96T23 1441 aaPredicted RBP19.34■□□□□ 0.69
HDLBP-213ENST00000427007 WDR62O43379 1518 aa19.33■□□□□ 0.68
HDLBP-213ENST00000427007 TOP2AP11388 1531 aaKnown RBP19.3■□□□□ 0.68
HDLBP-213ENST00000427007 CEP164Q9UPV0 1460 aa19.3■□□□□ 0.68
HDLBP-213ENST00000427007 FANCD2Q9BXW9 1451 aa19.28■□□□□ 0.68
HDLBP-213ENST00000427007 CFTRP13569 1480 aa19.25■□□□□ 0.67
HDLBP-213ENST00000427007 PRDM2Q13029 1718 aa19.14■□□□□ 0.65
HDLBP-213ENST00000427007 URB2Q14146 1524 aaKnown RBP19.12■□□□□ 0.65
HDLBP-213ENST00000427007 CCDC88BA6NC98 1476 aa19.08■□□□□ 0.64
HDLBP-213ENST00000427007 TRIM41Q8WV44 630 aa19.01■□□□□ 0.63
HDLBP-213ENST00000427007 OSCARQ8IYS5 282 aa18.92■□□□□ 0.62
HDLBP-213ENST00000427007 TOPBP1Q92547 1522 aa18.91■□□□□ 0.62
HDLBP-213ENST00000427007 IFT140Q96RY7 1462 aa18.9■□□□□ 0.62
HDLBP-213ENST00000427007 ZNF608Q9ULD9 1512 aaPredicted RBP18.9■□□□□ 0.62
HDLBP-213ENST00000427007 DNMBPQ6XZF7 1577 aa18.85■□□□□ 0.61
HDLBP-213ENST00000427007 ABCC8Q09428 1581 aa18.83■□□□□ 0.6
HDLBP-213ENST00000427007 EIF4G3O43432 1585 aaKnown RBP18.82■□□□□ 0.6
HDLBP-213ENST00000427007 TARBP1Q13395 1621 aaKnown RBP18.76■□□□□ 0.59
HDLBP-213ENST00000427007 RIMBP3CA6NJZ7 1639 aa18.74■□□□□ 0.59
HDLBP-213ENST00000427007 RIMBP3BA6NNM3 1639 aa18.74■□□□□ 0.59
HDLBP-213ENST00000427007 RIMBP3Q9UFD9 1639 aa18.74■□□□□ 0.59
HDLBP-213ENST00000427007 AQRO60306 1485 aaKnown RBP eCLIP18.72■□□□□ 0.592e-16■■■■□ 25
HDLBP-213ENST00000427007 POLA1P09884 1462 aaPredicted RBP18.71■□□□□ 0.59
HDLBP-213ENST00000427007 CHD1O14646 1710 aa18.7■□□□□ 0.58
HDLBP-213ENST00000427007 RAD54L2Q9Y4B4 1467 aa18.67■□□□□ 0.58
HDLBP-213ENST00000427007 ARHGEF11O15085 1522 aa18.66■□□□□ 0.58
HDLBP-213ENST00000427007 SOGA1O94964 1423 aa18.62■□□□□ 0.57
HDLBP-213ENST00000427007 FGD5Q6ZNL6 1462 aa18.61■□□□□ 0.57
HDLBP-213ENST00000427007 FBLN2P98095 1184 aa18.6■□□□□ 0.57
HDLBP-213ENST00000427007 CUX1P39880 1505 aa18.59■□□□□ 0.57
HDLBP-213ENST00000427007 TDRD9Q8NDG6 1382 aaKnown RBP18.59■□□□□ 0.57
HDLBP-213ENST00000427007 SNAPC4Q5SXM2 1469 aa18.54■□□□□ 0.56
HDLBP-213ENST00000427007 WDR97A6NE52 1622 aa18.53■□□□□ 0.56
HDLBP-213ENST00000427007 SUPT5HO00267 1087 aaKnown RBP18.53■□□□□ 0.56
HDLBP-213ENST00000427007 CYB5RLQ6IPT4 315 aa18.51■□□□□ 0.55
HDLBP-213ENST00000427007 ARAP1Q96P48 1450 aa18.48■□□□□ 0.55
HDLBP-213ENST00000427007 PBRM1Q86U86 1689 aa18.46■□□□□ 0.55
HDLBP-213ENST00000427007 GRIN2BQ13224 1484 aa18.46■□□□□ 0.54
HDLBP-213ENST00000427007 MAGI1Q96QZ7 1491 aaPredicted RBP18.46■□□□□ 0.54
HDLBP-213ENST00000427007 CLASP1Q7Z460 1538 aa18.44■□□□□ 0.54
HDLBP-213ENST00000427007 CHMP7Q8WUX9 453 aaPredicted RBP18.43■□□□□ 0.54
HDLBP-213ENST00000427007 SYNJ1O43426 1573 aa18.42■□□□□ 0.54
HDLBP-213ENST00000427007 SYNJ2O15056 1496 aa18.4■□□□□ 0.54
HDLBP-213ENST00000427007 GAPVD1Q14C86 1478 aa18.4■□□□□ 0.54
HDLBP-213ENST00000427007 ABCA5Q8WWZ7 1642 aa18.38■□□□□ 0.53
HDLBP-213ENST00000427007 ABCA10Q8WWZ4 1543 aa18.38■□□□□ 0.53
HDLBP-213ENST00000427007 TRHP20396 242 aaPredicted RBP18.32■□□□□ 0.52
HDLBP-213ENST00000427007 BIVM-ERCC5R4GMW8 1640 aa18.31■□□□□ 0.52
HDLBP-213ENST00000427007 TOP2BQ02880 1626 aa18.3■□□□□ 0.52
HDLBP-213ENST00000427007 WRNQ14191 1432 aaPredicted RBP eCLIP18.29■□□□□ 0.52
HDLBP-213ENST00000427007 ADAMTS12P58397 1594 aa18.25■□□□□ 0.51
HDLBP-213ENST00000427007 GRIN2AQ12879 1464 aa18.24■□□□□ 0.51
HDLBP-213ENST00000427007 CEP170Q5SW79 1584 aa18.2■□□□□ 0.5
HDLBP-213ENST00000427007 ERCC6L2Q5T890 1561 aa18.18■□□□□ 0.5
HDLBP-213ENST00000427007 FHAD1B1AJZ9 1412 aa18.15■□□□□ 0.5
HDLBP-213ENST00000427007 NUP160Q12769 1436 aa18.15■□□□□ 0.5
HDLBP-213ENST00000427007 ERICH3Q5RHP9 1530 aa18.14■□□□□ 0.49
HDLBP-213ENST00000427007 SHROOM2Q13796 1616 aa18.11■□□□□ 0.49
HDLBP-213ENST00000427007 RUSC2Q8N2Y8 1516 aa18■□□□□ 0.47
HDLBP-213ENST00000427007 PRG4Q92954 1404 aaPredicted RBP17.99■□□□□ 0.47
HDLBP-213ENST00000427007 JPH4Q96JJ6 628 aa17.96■□□□□ 0.47
HDLBP-213ENST00000427007 CUL7Q14999 1698 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms