RNA–Protein interactions for RNA: ENST00000426886.1

SMIM12-203, Transcript of small integral membrane protein 12, humanhuman

TSL 1 (best)

Gene SMIM12, Length 2,618 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM12-203ENST00000426886 NISCHQ9Y2I1 1504 aa29.97■■■□□ 2.39
SMIM12-203ENST00000426886 CCDC180Q9P1Z9 1646 aa26.43■■□□□ 1.82
SMIM12-203ENST00000426886 ABCC9O60706 1549 aa26.05■■□□□ 1.76
SMIM12-203ENST00000426886 DCAF8L2P0C7V8 631 aa25.35■■□□□ 1.65
SMIM12-203ENST00000426886 ZCCHC6Q5VYS8 1495 aaKnown RBP24.96■■□□□ 1.59
SMIM12-203ENST00000426886 RB1CC1Q8TDY2 1594 aa24.93■■□□□ 1.58
SMIM12-203ENST00000426886 NACADO15069 1562 aa24.91■■□□□ 1.58
SMIM12-203ENST00000426886 MYO15BQ96JP2 1530 aa24.71■■□□□ 1.55
SMIM12-203ENST00000426886 DCAF1Q9Y4B6 1507 aa24.68■■□□□ 1.54
SMIM12-203ENST00000426886 PABPN1Q86U42 306 aaKnown RBP eCLIP24.48■■□□□ 1.51
SMIM12-203ENST00000426886 SCRIBQ14160 1630 aa24.34■■□□□ 1.49
SMIM12-203ENST00000426886 UNC13AQ9UPW8 1703 aa24.33■■□□□ 1.48
SMIM12-203ENST00000426886 BICRAQ9NZM4 1560 aa24.19■■□□□ 1.46
SMIM12-203ENST00000426886 SHROOM4Q9ULL8 1493 aa24.03■■□□□ 1.44
SMIM12-203ENST00000426886 DNAJC5BQ9UF47 199 aa23.88■■□□□ 1.41
SMIM12-203ENST00000426886 EIF4G1Q04637 1599 aaKnown RBP23.56■■□□□ 1.36
SMIM12-203ENST00000426886 CC2D2AQ9P2K1 1620 aa23.46■■□□□ 1.35
SMIM12-203ENST00000426886 CECR2Q9BXF3 1484 aa23.44■■□□□ 1.34
SMIM12-203ENST00000426886 SMARCA4P51532 1647 aa23.21■■□□□ 1.31
SMIM12-203ENST00000426886 BAZ1AQ9NRL2 1556 aaPredicted RBP23.19■■□□□ 1.3
SMIM12-203ENST00000426886 MROH2BQ7Z745 1585 aa23.16■■□□□ 1.3
SMIM12-203ENST00000426886 ATAD2BQ9ULI0 1458 aa23.1■■□□□ 1.29
SMIM12-203ENST00000426886 NCAPD3P42695 1498 aa23.03■■□□□ 1.28
SMIM12-203ENST00000426886 SMARCA2P51531 1590 aa23.01■■□□□ 1.27
SMIM12-203ENST00000426886 RSF1Q96T23 1441 aaPredicted RBP22.95■■□□□ 1.26
SMIM12-203ENST00000426886 BAZ1BQ9UIG0 1483 aaKnown RBP22.93■■□□□ 1.26
SMIM12-203ENST00000426886 WIZO95785 1651 aa22.9■■□□□ 1.26
SMIM12-203ENST00000426886 PEG3Q9GZU2 1588 aa22.9■■□□□ 1.26
SMIM12-203ENST00000426886 HMGXB3Q12766 1538 aa22.86■■□□□ 1.25
SMIM12-203ENST00000426886 SUPT5HO00267 1087 aaKnown RBP22.7■■□□□ 1.22
SMIM12-203ENST00000426886 TOP2AP11388 1531 aaKnown RBP22.6■■□□□ 1.21
SMIM12-203ENST00000426886 NESP48681 1621 aa22.57■■□□□ 1.2
SMIM12-203ENST00000426886 CADPSQ9ULU8 1353 aa22.43■■□□□ 1.18
SMIM12-203ENST00000426886 CCDC88BA6NC98 1476 aa22.43■■□□□ 1.18
SMIM12-203ENST00000426886 ERCC6Q03468 1493 aa22.42■■□□□ 1.18
SMIM12-203ENST00000426886 LAMC3Q9Y6N6 1575 aa22.36■■□□□ 1.17
SMIM12-203ENST00000426886 PDS5BQ9NTI5 1447 aa22.29■■□□□ 1.16
SMIM12-203ENST00000426886 CFTRP13569 1480 aa22.28■■□□□ 1.16
SMIM12-203ENST00000426886 FANCD2Q9BXW9 1451 aa22.18■■□□□ 1.14
SMIM12-203ENST00000426886 KIF21AQ7Z4S6 1674 aa22.18■■□□□ 1.14
SMIM12-203ENST00000426886 CEP164Q9UPV0 1460 aa22.11■■□□□ 1.13
SMIM12-203ENST00000426886 THOC2Q8NI27 1593 aaKnown RBP22.04■■□□□ 1.12
SMIM12-203ENST00000426886 MRC2Q9UBG0 1479 aa22.03■■□□□ 1.12
SMIM12-203ENST00000426886 CUX2O14529 1486 aa22■■□□□ 1.11
SMIM12-203ENST00000426886 PRDM2Q13029 1718 aa21.95■■□□□ 1.1
SMIM12-203ENST00000426886 URB2Q14146 1524 aaKnown RBP21.93■■□□□ 1.1
SMIM12-203ENST00000426886 WDR62O43379 1518 aa21.9■■□□□ 1.1
SMIM12-203ENST00000426886 TOPBP1Q92547 1522 aa21.81■■□□□ 1.08
SMIM12-203ENST00000426886 ABCC8Q09428 1581 aa21.74■■□□□ 1.07
SMIM12-203ENST00000426886 DNMBPQ6XZF7 1577 aa21.74■■□□□ 1.07
SMIM12-203ENST00000426886 CUX1P39880 1505 aa21.7■■□□□ 1.06
SMIM12-203ENST00000426886 POLA1P09884 1462 aaPredicted RBP21.65■■□□□ 1.06
SMIM12-203ENST00000426886 WRNQ14191 1432 aaPredicted RBP eCLIP21.64■■□□□ 1.05
SMIM12-203ENST00000426886 RAD54L2Q9Y4B4 1467 aa21.63■■□□□ 1.05
SMIM12-203ENST00000426886 FGD5Q6ZNL6 1462 aa21.63■■□□□ 1.05
SMIM12-203ENST00000426886 IFT140Q96RY7 1462 aa21.62■■□□□ 1.05
SMIM12-203ENST00000426886 SOGA1O94964 1423 aa21.61■■□□□ 1.05
SMIM12-203ENST00000426886 ZNF608Q9ULD9 1512 aaPredicted RBP21.6■■□□□ 1.05
SMIM12-203ENST00000426886 SYNJ1O43426 1573 aa21.54■■□□□ 1.04
SMIM12-203ENST00000426886 TDRD9Q8NDG6 1382 aaKnown RBP21.54■■□□□ 1.04
SMIM12-203ENST00000426886 AQRO60306 1485 aaKnown RBP eCLIP21.53■■□□□ 1.04
SMIM12-203ENST00000426886 TARBP1Q13395 1621 aaKnown RBP21.51■■□□□ 1.03
SMIM12-203ENST00000426886 TOP2BQ02880 1626 aa21.48■■□□□ 1.03
SMIM12-203ENST00000426886 BIVM-ERCC5R4GMW8 1640 aa21.43■■□□□ 1.02
SMIM12-203ENST00000426886 EIF4G3O43432 1585 aaKnown RBP21.42■■□□□ 1.02
SMIM12-203ENST00000426886 FBLN2P98095 1184 aa21.39■■□□□ 1.01
SMIM12-203ENST00000426886 ABCA10Q8WWZ4 1543 aa21.36■■□□□ 1.01
SMIM12-203ENST00000426886 TRIM41Q8WV44 630 aa21.35■■□□□ 1.01
SMIM12-203ENST00000426886 DNAJC5Q9H3Z4 198 aa21.33■■□□□ 1.01
SMIM12-203ENST00000426886 GAPVD1Q14C86 1478 aa21.32■■□□□ 1
SMIM12-203ENST00000426886 WDR97A6NE52 1622 aa21.29■■□□□ 1
SMIM12-203ENST00000426886 OSCARQ8IYS5 282 aa21.28■■□□□ 1
SMIM12-203ENST00000426886 GRIN2BQ13224 1484 aa21.28■■□□□ 1
SMIM12-203ENST00000426886 SNAPC4Q5SXM2 1469 aa21.27■■□□□ 1
SMIM12-203ENST00000426886 CHMP7Q8WUX9 453 aaPredicted RBP21.25■□□□□ 0.99
SMIM12-203ENST00000426886 ABCA5Q8WWZ7 1642 aa21.22■□□□□ 0.99
SMIM12-203ENST00000426886 MAGI1Q96QZ7 1491 aaPredicted RBP21.17■□□□□ 0.98
SMIM12-203ENST00000426886 KIF27Q86VH2 1401 aa21.17■□□□□ 0.98
SMIM12-203ENST00000426886 PBRM1Q86U86 1689 aa21.17■□□□□ 0.98
SMIM12-203ENST00000426886 CHIC1Q5VXU3 224 aa21.15■□□□□ 0.98
SMIM12-203ENST00000426886 SYNJ2O15056 1496 aa21.12■□□□□ 0.97
SMIM12-203ENST00000426886 CHD1O14646 1710 aa21.11■□□□□ 0.97
SMIM12-203ENST00000426886 IGF1RP08069 1367 aa21.11■□□□□ 0.97
SMIM12-203ENST00000426886 RUSC2Q8N2Y8 1516 aa21.1■□□□□ 0.97
SMIM12-203ENST00000426886 ERICH3Q5RHP9 1530 aa21.08■□□□□ 0.97
SMIM12-203ENST00000426886 FHAD1B1AJZ9 1412 aa21.06■□□□□ 0.96
SMIM12-203ENST00000426886 ADAMTS12P58397 1594 aa21.03■□□□□ 0.96
SMIM12-203ENST00000426886 FAM9AQ8IZU1 332 aaPredicted RBP21.03■□□□□ 0.96
SMIM12-203ENST00000426886 GRIN2AQ12879 1464 aa21.01■□□□□ 0.95
SMIM12-203ENST00000426886 CARMIL1Q5VZK9 1371 aa20.99■□□□□ 0.95
SMIM12-203ENST00000426886 CEP170Q5SW79 1584 aa20.89■□□□□ 0.93
SMIM12-203ENST00000426886 CSRNP3Q8WYN3 585 aa20.89■□□□□ 0.93
SMIM12-203ENST00000426886 CUL7Q14999 1698 aa20.88■□□□□ 0.93
SMIM12-203ENST00000426886 NUP160Q12769 1436 aa20.88■□□□□ 0.93
SMIM12-203ENST00000426886 CLASP1Q7Z460 1538 aa20.87■□□□□ 0.93
SMIM12-203ENST00000426886 EHMT2Q96KQ7 1210 aa20.85■□□□□ 0.93
SMIM12-203ENST00000426886 ARHGEF11O15085 1522 aa20.84■□□□□ 0.93
SMIM12-203ENST00000426886 CYB5RLQ6IPT4 315 aa20.83■□□□□ 0.93
SMIM12-203ENST00000426886 RAPGEF2Q9Y4G8 1499 aa20.82■□□□□ 0.92
SMIM12-203ENST00000426886 JPH4Q96JJ6 628 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms