RNA–Protein interactions for RNA: ENST00000426059.1

FN1-208, Transcript of fibronectin 1, humanhuman

TSL 1 (best) BASIC

Gene FN1, Length 2,388 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FN1-208ENST00000426059 NISCHQ9Y2I1 1504 aa39.19■■■■□ 3.86
FN1-208ENST00000426059 CCDC180Q9P1Z9 1646 aa34.03■■■■□ 3.04
FN1-208ENST00000426059 ZCCHC6Q5VYS8 1495 aaKnown RBP32.9■■■□□ 2.86
FN1-208ENST00000426059 DCAF8L2P0C7V8 631 aa32.68■■■□□ 2.82
FN1-208ENST00000426059 ABCC9O60706 1549 aa32.45■■■□□ 2.78
FN1-208ENST00000426059 SHROOM4Q9ULL8 1493 aa32.3■■■□□ 2.76
FN1-208ENST00000426059 DCAF1Q9Y4B6 1507 aa32.24■■■□□ 2.75
FN1-208ENST00000426059 MYO15BQ96JP2 1530 aa31.81■■■□□ 2.68
FN1-208ENST00000426059 NACADO15069 1562 aa31.72■■■□□ 2.67
FN1-208ENST00000426059 SCRIBQ14160 1630 aa31.54■■■□□ 2.64
FN1-208ENST00000426059 RB1CC1Q8TDY2 1594 aa31.49■■■□□ 2.63
FN1-208ENST00000426059 SUPT5HO00267 1087 aaKnown RBP31.07■■■□□ 2.56
FN1-208ENST00000426059 UNC13AQ9UPW8 1703 aa30.98■■■□□ 2.55
FN1-208ENST00000426059 PABPN1Q86U42 306 aaKnown RBP eCLIP30.7■■■□□ 2.5
FN1-208ENST00000426059 BICRAQ9NZM4 1560 aa30.62■■■□□ 2.49
FN1-208ENST00000426059 CECR2Q9BXF3 1484 aa30.59■■■□□ 2.49
FN1-208ENST00000426059 RSF1Q96T23 1441 aaPredicted RBP30.47■■■□□ 2.47
FN1-208ENST00000426059 MROH2BQ7Z745 1585 aa30.37■■■□□ 2.45
FN1-208ENST00000426059 BAZ1AQ9NRL2 1556 aaPredicted RBP30.22■■■□□ 2.43
FN1-208ENST00000426059 WIZO95785 1651 aa30.15■■■□□ 2.42
FN1-208ENST00000426059 SMARCA4P51532 1647 aa30.13■■■□□ 2.41
FN1-208ENST00000426059 TOP2AP11388 1531 aaKnown RBP29.7■■■□□ 2.34
FN1-208ENST00000426059 EIF4G1Q04637 1599 aaKnown RBP29.69■■■□□ 2.34
FN1-208ENST00000426059 PEG3Q9GZU2 1588 aa29.66■■■□□ 2.34
FN1-208ENST00000426059 CHIC1Q5VXU3 224 aa29.64■■■□□ 2.34
FN1-208ENST00000426059 ATAD2BQ9ULI0 1458 aa29.64■■■□□ 2.34
FN1-208ENST00000426059 SMARCA2P51531 1590 aa29.54■■■□□ 2.32
FN1-208ENST00000426059 CCDC88BA6NC98 1476 aa29.5■■■□□ 2.31
FN1-208ENST00000426059 BAZ1BQ9UIG0 1483 aaKnown RBP29.49■■■□□ 2.31
FN1-208ENST00000426059 NCAPD3P42695 1498 aa29.31■■■□□ 2.28
FN1-208ENST00000426059 CC2D2AQ9P2K1 1620 aa29.28■■■□□ 2.28
FN1-208ENST00000426059 HMGXB3Q12766 1538 aa29.24■■■□□ 2.27
FN1-208ENST00000426059 TRIM41Q8WV44 630 aa29.09■■■□□ 2.25
FN1-208ENST00000426059 ABCC8Q09428 1581 aa28.97■■■□□ 2.23
FN1-208ENST00000426059 DNAJC5BQ9UF47 199 aa28.78■■■□□ 2.2
FN1-208ENST00000426059 FAM9AQ8IZU1 332 aaPredicted RBP28.74■■■□□ 2.19
FN1-208ENST00000426059 CFTRP13569 1480 aa28.71■■■□□ 2.19
FN1-208ENST00000426059 WRNQ14191 1432 aaPredicted RBP eCLIP28.67■■■□□ 2.18
FN1-208ENST00000426059 LOC105371045A0A1W2PR82 267 aa28.66■■■□□ 2.18
FN1-208ENST00000426059 CADPSQ9ULU8 1353 aa28.63■■■□□ 2.17
FN1-208ENST00000426059 SYNJ1O43426 1573 aa28.59■■■□□ 2.17
FN1-208ENST00000426059 NESP48681 1621 aa28.52■■■□□ 2.16
FN1-208ENST00000426059 PRDM2Q13029 1718 aa28.51■■■□□ 2.15
FN1-208ENST00000426059 EHMT2Q96KQ7 1210 aa28.47■■■□□ 2.15
FN1-208ENST00000426059 SOGA1O94964 1423 aa28.43■■■□□ 2.14
FN1-208ENST00000426059 TOP2BQ02880 1626 aa28.38■■■□□ 2.13
FN1-208ENST00000426059 CUX1P39880 1505 aa28.37■■■□□ 2.13
FN1-208ENST00000426059 RUSC2Q8N2Y8 1516 aa28.36■■■□□ 2.13
FN1-208ENST00000426059 FANCD2Q9BXW9 1451 aa28.34■■■□□ 2.13
FN1-208ENST00000426059 BIVM-ERCC5R4GMW8 1640 aa28.33■■■□□ 2.13
FN1-208ENST00000426059 LAMC3Q9Y6N6 1575 aa28.3■■■□□ 2.12
FN1-208ENST00000426059 CSRNP3Q8WYN3 585 aa28.15■■■□□ 2.1
FN1-208ENST00000426059 CEP164Q9UPV0 1460 aa28.13■■■□□ 2.09
FN1-208ENST00000426059 EEA1Q15075 1411 aa28.13■■■□□ 2.09
FN1-208ENST00000426059 PDS5BQ9NTI5 1447 aa28.11■■■□□ 2.09
FN1-208ENST00000426059 KIF21AQ7Z4S6 1674 aa28.1■■■□□ 2.09
FN1-208ENST00000426059 FGD5Q6ZNL6 1462 aa28.06■■■□□ 2.08
FN1-208ENST00000426059 TOPBP1Q92547 1522 aa28.03■■■□□ 2.08
FN1-208ENST00000426059 DNMBPQ6XZF7 1577 aa28.03■■■□□ 2.08
FN1-208ENST00000426059 URB2Q14146 1524 aaKnown RBP28.01■■■□□ 2.07
FN1-208ENST00000426059 POLA1P09884 1462 aaPredicted RBP27.91■■■□□ 2.06
FN1-208ENST00000426059 RAD54L2Q9Y4B4 1467 aa27.91■■■□□ 2.06
FN1-208ENST00000426059 KIF27Q86VH2 1401 aa27.9■■■□□ 2.06
FN1-208ENST00000426059 CUX2O14529 1486 aa27.9■■■□□ 2.06
FN1-208ENST00000426059 UBTFP17480 764 aaKnown RBP27.89■■■□□ 2.06
FN1-208ENST00000426059 GOLGA3Q08378 1498 aa27.85■■■□□ 2.05
FN1-208ENST00000426059 KIF21BO75037 1637 aa27.83■■■□□ 2.04
FN1-208ENST00000426059 RAPGEF2Q9Y4G8 1499 aa27.81■■■□□ 2.04
FN1-208ENST00000426059 MRC2Q9UBG0 1479 aa27.76■■■□□ 2.04
FN1-208ENST00000426059 TNIKQ9UKE5 1360 aa27.76■■■□□ 2.03
FN1-208ENST00000426059 ERCC6Q03468 1493 aa27.75■■■□□ 2.03
FN1-208ENST00000426059 ABCA10Q8WWZ4 1543 aa27.73■■■□□ 2.03
FN1-208ENST00000426059 PRXQ9BXM0 1461 aa27.72■■■□□ 2.03
FN1-208ENST00000426059 IGF1RP08069 1367 aa27.71■■■□□ 2.03
FN1-208ENST00000426059 CEP162Q5TB80 1403 aa27.69■■■□□ 2.02
FN1-208ENST00000426059 TDRD9Q8NDG6 1382 aaKnown RBP27.65■■■□□ 2.02
FN1-208ENST00000426059 WDR97A6NE52 1622 aa27.64■■■□□ 2.02
FN1-208ENST00000426059 RANGAP1P46060 587 aaPredicted RBP27.62■■■□□ 2.01
FN1-208ENST00000426059 ERICH3Q5RHP9 1530 aa27.61■■■□□ 2.01
FN1-208ENST00000426059 WDR62O43379 1518 aa27.6■■■□□ 2.01
FN1-208ENST00000426059 TARBP1Q13395 1621 aaKnown RBP27.59■■■□□ 2.01
FN1-208ENST00000426059 CARMIL1Q5VZK9 1371 aa27.57■■■□□ 2
FN1-208ENST00000426059 THOC2Q8NI27 1593 aaKnown RBP27.55■■■□□ 2
FN1-208ENST00000426059 ABCA5Q8WWZ7 1642 aa27.51■■■□□ 2
FN1-208ENST00000426059 GAPVD1Q14C86 1478 aa27.5■■□□□ 1.99
FN1-208ENST00000426059 CLIP1P30622 1438 aa27.46■■□□□ 1.99
FN1-208ENST00000426059 AQRO60306 1485 aaKnown RBP eCLIP27.46■■□□□ 1.994e-12■■■□□ 18.6
FN1-208ENST00000426059 PPARGC1BQ86YN6 1023 aaKnown RBP27.42■■□□□ 1.98
FN1-208ENST00000426059 ZNF608Q9ULD9 1512 aaPredicted RBP27.42■■□□□ 1.98
FN1-208ENST00000426059 IFT140Q96RY7 1462 aa27.41■■□□□ 1.98
FN1-208ENST00000426059 CUL7Q14999 1698 aa27.38■■□□□ 1.97
FN1-208ENST00000426059 PBRM1Q86U86 1689 aa27.34■■□□□ 1.97
FN1-208ENST00000426059 PCGF6Q9BYE7 350 aa27.34■■□□□ 1.97
FN1-208ENST00000426059 EIF4G3O43432 1585 aaKnown RBP27.24■■□□□ 1.95
FN1-208ENST00000426059 GRIN2BQ13224 1484 aa27.24■■□□□ 1.95
FN1-208ENST00000426059 TTBK1Q5TCY1 1321 aaPredicted RBP27.21■■□□□ 1.95
FN1-208ENST00000426059 ARAP1Q96P48 1450 aa27.19■■□□□ 1.94
FN1-208ENST00000426059 ARHGAP35Q9NRY4 1499 aa27.18■■□□□ 1.94
FN1-208ENST00000426059 VPS8Q8N3P4 1428 aa27.18■■□□□ 1.94
FN1-208ENST00000426059 TRIM26Q12899 539 aaPredicted RBP27.17■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms