RNA–Protein interactions for RNA: ENST00000423941.5

HDAC6-205, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-205ENST00000423941 NISCHQ9Y2I1 1504 aa44.77■■■■■ 4.76
HDAC6-205ENST00000423941 CCDC180Q9P1Z9 1646 aa39.74■■■■□ 3.95
HDAC6-205ENST00000423941 ABCC9O60706 1549 aa38.59■■■■□ 3.77
HDAC6-205ENST00000423941 ZCCHC6Q5VYS8 1495 aaKnown RBP37.33■■■■□ 3.57
HDAC6-205ENST00000423941 NACADO15069 1562 aa37.31■■■■□ 3.56
HDAC6-205ENST00000423941 RB1CC1Q8TDY2 1594 aa37.26■■■■□ 3.56
HDAC6-205ENST00000423941 MYO15BQ96JP2 1530 aa37.23■■■■□ 3.55
HDAC6-205ENST00000423941 DCAF8L2P0C7V8 631 aa37.13■■■■□ 3.53
HDAC6-205ENST00000423941 DCAF1Q9Y4B6 1507 aa37.12■■■■□ 3.53
HDAC6-205ENST00000423941 UNC13AQ9UPW8 1703 aa36.5■■■■□ 3.43
HDAC6-205ENST00000423941 BICRAQ9NZM4 1560 aa36.21■■■■□ 3.39
HDAC6-205ENST00000423941 SCRIBQ14160 1630 aa36.16■■■■□ 3.38
HDAC6-205ENST00000423941 PABPN1Q86U42 306 aaKnown RBP eCLIP36.08■■■■□ 3.37
HDAC6-205ENST00000423941 SHROOM4Q9ULL8 1493 aa35.84■■■■□ 3.33
HDAC6-205ENST00000423941 DNAJC5BQ9UF47 199 aa35.36■■■■□ 3.25
HDAC6-205ENST00000423941 EIF4G1Q04637 1599 aaKnown RBP35.17■■■■□ 3.22
HDAC6-205ENST00000423941 CC2D2AQ9P2K1 1620 aa34.98■■■■□ 3.19
HDAC6-205ENST00000423941 CECR2Q9BXF3 1484 aa34.84■■■■□ 3.17
HDAC6-205ENST00000423941 SMARCA4P51532 1647 aa34.68■■■■□ 3.14
HDAC6-205ENST00000423941 BAZ1AQ9NRL2 1556 aaPredicted RBP34.66■■■■□ 3.14
HDAC6-205ENST00000423941 MROH2BQ7Z745 1585 aa34.49■■■■□ 3.11
HDAC6-205ENST00000423941 NCAPD3P42695 1498 aa34.46■■■■□ 3.11
HDAC6-205ENST00000423941 ATAD2BQ9ULI0 1458 aa34.46■■■■□ 3.11
HDAC6-205ENST00000423941 PEG3Q9GZU2 1588 aa34.42■■■■□ 3.1
HDAC6-205ENST00000423941 SMARCA2P51531 1590 aa34.4■■■■□ 3.1
HDAC6-205ENST00000423941 HMGXB3Q12766 1538 aa34.27■■■■□ 3.08
HDAC6-205ENST00000423941 RSF1Q96T23 1441 aaPredicted RBP34.17■■■■□ 3.06
HDAC6-205ENST00000423941 BAZ1BQ9UIG0 1483 aaKnown RBP34.12■■■■□ 3.05
HDAC6-205ENST00000423941 WIZO95785 1651 aa34.12■■■■□ 3.05
HDAC6-205ENST00000423941 TOP2AP11388 1531 aaKnown RBP33.76■■■■□ 3
HDAC6-205ENST00000423941 NESP48681 1621 aa33.49■■■□□ 2.95
HDAC6-205ENST00000423941 LAMC3Q9Y6N6 1575 aa33.48■■■□□ 2.95
HDAC6-205ENST00000423941 CADPSQ9ULU8 1353 aa33.41■■■□□ 2.94
HDAC6-205ENST00000423941 CCDC88BA6NC98 1476 aa33.37■■■□□ 2.93
HDAC6-205ENST00000423941 SUPT5HO00267 1087 aaKnown RBP33.29■■■□□ 2.92
HDAC6-205ENST00000423941 CFTRP13569 1480 aa33.28■■■□□ 2.92
HDAC6-205ENST00000423941 PDS5BQ9NTI5 1447 aa33.2■■■□□ 2.91
HDAC6-205ENST00000423941 ERCC6Q03468 1493 aa33.19■■■□□ 2.9
HDAC6-205ENST00000423941 KIF21AQ7Z4S6 1674 aa33.11■■■□□ 2.89
HDAC6-205ENST00000423941 PRDM2Q13029 1718 aa33.04■■■□□ 2.88
HDAC6-205ENST00000423941 FANCD2Q9BXW9 1451 aa32.99■■■□□ 2.87
HDAC6-205ENST00000423941 THOC2Q8NI27 1593 aaKnown RBP32.98■■■□□ 2.87
HDAC6-205ENST00000423941 CEP164Q9UPV0 1460 aa32.92■■■□□ 2.86
HDAC6-205ENST00000423941 CUX2O14529 1486 aa32.9■■■□□ 2.86
HDAC6-205ENST00000423941 MRC2Q9UBG0 1479 aa32.84■■■□□ 2.85
HDAC6-205ENST00000423941 WDR62O43379 1518 aa32.77■■■□□ 2.84
HDAC6-205ENST00000423941 URB2Q14146 1524 aaKnown RBP32.68■■■□□ 2.82
HDAC6-205ENST00000423941 ABCC8Q09428 1581 aa32.54■■■□□ 2.8
HDAC6-205ENST00000423941 TOPBP1Q92547 1522 aa32.51■■■□□ 2.8
HDAC6-205ENST00000423941 DNMBPQ6XZF7 1577 aa32.48■■■□□ 2.79
HDAC6-205ENST00000423941 CUX1P39880 1505 aa32.34■■■□□ 2.77
HDAC6-205ENST00000423941 IFT140Q96RY7 1462 aa32.25■■■□□ 2.75
HDAC6-205ENST00000423941 POLA1P09884 1462 aaPredicted RBP32.23■■■□□ 2.75
HDAC6-205ENST00000423941 TARBP1Q13395 1621 aaKnown RBP32.18■■■□□ 2.74
HDAC6-205ENST00000423941 WRNQ14191 1432 aaPredicted RBP eCLIP32.17■■■□□ 2.74
HDAC6-205ENST00000423941 FGD5Q6ZNL6 1462 aa32.16■■■□□ 2.74
HDAC6-205ENST00000423941 BIVM-ERCC5R4GMW8 1640 aa32.14■■■□□ 2.74
HDAC6-205ENST00000423941 TOP2BQ02880 1626 aa32.12■■■□□ 2.73
HDAC6-205ENST00000423941 SOGA1O94964 1423 aa32.1■■■□□ 2.73
HDAC6-205ENST00000423941 SYNJ1O43426 1573 aa32.09■■■□□ 2.73
HDAC6-205ENST00000423941 ZNF608Q9ULD9 1512 aaPredicted RBP32.08■■■□□ 2.73
HDAC6-205ENST00000423941 RAD54L2Q9Y4B4 1467 aa32.07■■■□□ 2.72
HDAC6-205ENST00000423941 WDR97A6NE52 1622 aa31.96■■■□□ 2.71
HDAC6-205ENST00000423941 EIF4G3O43432 1585 aaKnown RBP31.95■■■□□ 2.71
HDAC6-205ENST00000423941 ABCA10Q8WWZ4 1543 aa31.92■■■□□ 2.7
HDAC6-205ENST00000423941 AQRO60306 1485 aaKnown RBP eCLIP31.91■■■□□ 2.74e-14■■□□□ 11.4
HDAC6-205ENST00000423941 TDRD9Q8NDG6 1382 aaKnown RBP31.87■■■□□ 2.69
HDAC6-205ENST00000423941 ABCA5Q8WWZ7 1642 aa31.77■■■□□ 2.68
HDAC6-205ENST00000423941 GAPVD1Q14C86 1478 aa31.73■■■□□ 2.67
HDAC6-205ENST00000423941 GRIN2BQ13224 1484 aa31.71■■■□□ 2.67
HDAC6-205ENST00000423941 DNAJC5Q9H3Z4 198 aa31.7■■■□□ 2.67
HDAC6-205ENST00000423941 PBRM1Q86U86 1689 aa31.66■■■□□ 2.66
HDAC6-205ENST00000423941 MAGI1Q96QZ7 1491 aaPredicted RBP31.62■■■□□ 2.65
HDAC6-205ENST00000423941 SNAPC4Q5SXM2 1469 aa31.6■■■□□ 2.65
HDAC6-205ENST00000423941 OSCARQ8IYS5 282 aa31.54■■■□□ 2.64
HDAC6-205ENST00000423941 ERICH3Q5RHP9 1530 aa31.53■■■□□ 2.64
HDAC6-205ENST00000423941 CHD1O14646 1710 aa31.52■■■□□ 2.64
HDAC6-205ENST00000423941 SYNJ2O15056 1496 aa31.48■■■□□ 2.63
HDAC6-205ENST00000423941 KIF27Q86VH2 1401 aa31.48■■■□□ 2.63
HDAC6-205ENST00000423941 TRIM41Q8WV44 630 aa31.47■■■□□ 2.63
HDAC6-205ENST00000423941 ADAMTS12P58397 1594 aa31.42■■■□□ 2.62
HDAC6-205ENST00000423941 CHMP7Q8WUX9 453 aaPredicted RBP31.39■■■□□ 2.62
HDAC6-205ENST00000423941 IGF1RP08069 1367 aa31.39■■■□□ 2.62
HDAC6-205ENST00000423941 FHAD1B1AJZ9 1412 aa31.39■■■□□ 2.62
HDAC6-205ENST00000423941 FBLN2P98095 1184 aa31.38■■■□□ 2.61
HDAC6-205ENST00000423941 GRIN2AQ12879 1464 aa31.3■■■□□ 2.6
HDAC6-205ENST00000423941 CHIC1Q5VXU3 224 aa31.29■■■□□ 2.6
HDAC6-205ENST00000423941 RUSC2Q8N2Y8 1516 aa31.28■■■□□ 2.6
HDAC6-205ENST00000423941 CUL7Q14999 1698 aa31.25■■■□□ 2.59
HDAC6-205ENST00000423941 CLASP1Q7Z460 1538 aa31.24■■■□□ 2.59
HDAC6-205ENST00000423941 NUP160Q12769 1436 aa31.2■■■□□ 2.59
HDAC6-205ENST00000423941 CARMIL1Q5VZK9 1371 aa31.16■■■□□ 2.58
HDAC6-205ENST00000423941 CEP170Q5SW79 1584 aa31.15■■■□□ 2.58
HDAC6-205ENST00000423941 ARHGEF11O15085 1522 aa31.03■■■□□ 2.56
HDAC6-205ENST00000423941 RIMBP3CA6NJZ7 1639 aa31.02■■■□□ 2.56
HDAC6-205ENST00000423941 RIMBP3BA6NNM3 1639 aa31.02■■■□□ 2.56
HDAC6-205ENST00000423941 RIMBP3Q9UFD9 1639 aa31.02■■■□□ 2.56
HDAC6-205ENST00000423941 EEA1Q15075 1411 aa31.02■■■□□ 2.56
HDAC6-205ENST00000423941 RAPGEF2Q9Y4G8 1499 aa31■■■□□ 2.55
HDAC6-205ENST00000423941 PRXQ9BXM0 1461 aa30.98■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 582.7 ms