RNA–Protein interactions for RNA: ENST00000421816.6

GCDH-202, Transcript of glutaryl-CoA dehydrogenase, humanhuman

TSL 2

Gene GCDH, Length 1,109 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GCDH-202ENST00000421816 NISCHQ9Y2I1 1504 aa46.79■■■■■ 5.08
GCDH-202ENST00000421816 CCDC180Q9P1Z9 1646 aa41.55■■■■■ 4.24
GCDH-202ENST00000421816 ABCC9O60706 1549 aa40.36■■■■■ 4.05
GCDH-202ENST00000421816 ZCCHC6Q5VYS8 1495 aaKnown RBP39.02■■■■□ 3.84
GCDH-202ENST00000421816 NACADO15069 1562 aa38.98■■■■□ 3.83
GCDH-202ENST00000421816 RB1CC1Q8TDY2 1594 aa38.96■■■■□ 3.83
GCDH-202ENST00000421816 DCAF8L2P0C7V8 631 aa38.87■■■■□ 3.81
GCDH-202ENST00000421816 MYO15BQ96JP2 1530 aa38.84■■■■□ 3.81
GCDH-202ENST00000421816 DCAF1Q9Y4B6 1507 aa38.75■■■■□ 3.79
GCDH-202ENST00000421816 UNC13AQ9UPW8 1703 aa38.14■■■■□ 3.7
GCDH-202ENST00000421816 SCRIBQ14160 1630 aa37.86■■■■□ 3.65
GCDH-202ENST00000421816 BICRAQ9NZM4 1560 aa37.81■■■■□ 3.64
GCDH-202ENST00000421816 PABPN1Q86U42 306 aaKnown RBP eCLIP37.72■■■■□ 3.63
GCDH-202ENST00000421816 SHROOM4Q9ULL8 1493 aa37.42■■■■□ 3.58
GCDH-202ENST00000421816 DNAJC5BQ9UF47 199 aa36.87■■■■□ 3.49
GCDH-202ENST00000421816 EIF4G1Q04637 1599 aaKnown RBP36.76■■■■□ 3.48
GCDH-202ENST00000421816 CC2D2AQ9P2K1 1620 aa36.56■■■■□ 3.44
GCDH-202ENST00000421816 CECR2Q9BXF3 1484 aa36.41■■■■□ 3.42
GCDH-202ENST00000421816 SMARCA4P51532 1647 aa36.26■■■■□ 3.4
GCDH-202ENST00000421816 BAZ1AQ9NRL2 1556 aaPredicted RBP36.24■■■■□ 3.39
GCDH-202ENST00000421816 MROH2BQ7Z745 1585 aa36.06■■■■□ 3.36
GCDH-202ENST00000421816 ATAD2BQ9ULI0 1458 aa35.99■■■■□ 3.35
GCDH-202ENST00000421816 SMARCA2P51531 1590 aa35.97■■■■□ 3.35
GCDH-202ENST00000421816 NCAPD3P42695 1498 aa35.96■■■■□ 3.35
GCDH-202ENST00000421816 PEG3Q9GZU2 1588 aa35.93■■■■□ 3.34
GCDH-202ENST00000421816 HMGXB3Q12766 1538 aa35.82■■■■□ 3.32
GCDH-202ENST00000421816 RSF1Q96T23 1441 aaPredicted RBP35.71■■■■□ 3.31
GCDH-202ENST00000421816 BAZ1BQ9UIG0 1483 aaKnown RBP35.69■■■■□ 3.3
GCDH-202ENST00000421816 WIZO95785 1651 aa35.68■■■■□ 3.3
GCDH-202ENST00000421816 TOP2AP11388 1531 aaKnown RBP35.32■■■■□ 3.24
GCDH-202ENST00000421816 NESP48681 1621 aa35.01■■■■□ 3.19
GCDH-202ENST00000421816 LAMC3Q9Y6N6 1575 aa34.98■■■■□ 3.19
GCDH-202ENST00000421816 CADPSQ9ULU8 1353 aa34.89■■■■□ 3.18
GCDH-202ENST00000421816 CCDC88BA6NC98 1476 aa34.89■■■■□ 3.18
GCDH-202ENST00000421816 SUPT5HO00267 1087 aaKnown RBP34.87■■■■□ 3.17
GCDH-202ENST00000421816 CFTRP13569 1480 aa34.75■■■■□ 3.15
GCDH-202ENST00000421816 ERCC6Q03468 1493 aa34.75■■■■□ 3.15
GCDH-202ENST00000421816 PDS5BQ9NTI5 1447 aa34.7■■■■□ 3.15
GCDH-202ENST00000421816 KIF21AQ7Z4S6 1674 aa34.64■■■■□ 3.14
GCDH-202ENST00000421816 PRDM2Q13029 1718 aa34.57■■■■□ 3.12
GCDH-202ENST00000421816 FANCD2Q9BXW9 1451 aa34.49■■■■□ 3.11
GCDH-202ENST00000421816 THOC2Q8NI27 1593 aaKnown RBP34.48■■■■□ 3.11
GCDH-202ENST00000421816 CEP164Q9UPV0 1460 aa34.43■■■■□ 3.1
GCDH-202ENST00000421816 CUX2O14529 1486 aa34.36■■■■□ 3.09
GCDH-202ENST00000421816 MRC2Q9UBG0 1479 aa34.35■■■■□ 3.09
GCDH-202ENST00000421816 WDR62O43379 1518 aa34.25■■■■□ 3.07
GCDH-202ENST00000421816 URB2Q14146 1524 aaKnown RBP34.15■■■■□ 3.06
GCDH-202ENST00000421816 ABCC8Q09428 1581 aa33.99■■■■□ 3.03
GCDH-202ENST00000421816 TOPBP1Q92547 1522 aa33.99■■■■□ 3.03
GCDH-202ENST00000421816 DNMBPQ6XZF7 1577 aa33.98■■■■□ 3.03
GCDH-202ENST00000421816 CUX1P39880 1505 aa33.81■■■■□ 3
GCDH-202ENST00000421816 POLA1P09884 1462 aaPredicted RBP33.7■■■□□ 2.99
GCDH-202ENST00000421816 IFT140Q96RY7 1462 aa33.7■■■□□ 2.99
GCDH-202ENST00000421816 FGD5Q6ZNL6 1462 aa33.65■■■□□ 2.98
GCDH-202ENST00000421816 WRNQ14191 1432 aaPredicted RBP eCLIP33.64■■■□□ 2.98
GCDH-202ENST00000421816 TARBP1Q13395 1621 aaKnown RBP33.63■■■□□ 2.97
GCDH-202ENST00000421816 BIVM-ERCC5R4GMW8 1640 aa33.61■■■□□ 2.97
GCDH-202ENST00000421816 TOP2BQ02880 1626 aa33.59■■■□□ 2.97
GCDH-202ENST00000421816 SYNJ1O43426 1573 aa33.58■■■□□ 2.97
GCDH-202ENST00000421816 SOGA1O94964 1423 aa33.54■■■□□ 2.96
GCDH-202ENST00000421816 RAD54L2Q9Y4B4 1467 aa33.54■■■□□ 2.96
GCDH-202ENST00000421816 ZNF608Q9ULD9 1512 aaPredicted RBP33.53■■■□□ 2.96
GCDH-202ENST00000421816 EIF4G3O43432 1585 aaKnown RBP33.43■■■□□ 2.94
GCDH-202ENST00000421816 WDR97A6NE52 1622 aa33.42■■■□□ 2.94
GCDH-202ENST00000421816 AQRO60306 1485 aaKnown RBP eCLIP33.36■■■□□ 2.931e-6■■■■■ 37.5
GCDH-202ENST00000421816 ABCA10Q8WWZ4 1543 aa33.35■■■□□ 2.93
GCDH-202ENST00000421816 TDRD9Q8NDG6 1382 aaKnown RBP33.32■■■□□ 2.92
GCDH-202ENST00000421816 ABCA5Q8WWZ7 1642 aa33.22■■■□□ 2.91
GCDH-202ENST00000421816 GAPVD1Q14C86 1478 aa33.17■■■□□ 2.9
GCDH-202ENST00000421816 GRIN2BQ13224 1484 aa33.15■■■□□ 2.9
GCDH-202ENST00000421816 PBRM1Q86U86 1689 aa33.14■■■□□ 2.9
GCDH-202ENST00000421816 SNAPC4Q5SXM2 1469 aa33.06■■■□□ 2.88
GCDH-202ENST00000421816 MAGI1Q96QZ7 1491 aaPredicted RBP33.05■■■□□ 2.88
GCDH-202ENST00000421816 DNAJC5Q9H3Z4 198 aa33.04■■■□□ 2.88
GCDH-202ENST00000421816 CHD1O14646 1710 aa32.99■■■□□ 2.87
GCDH-202ENST00000421816 ERICH3Q5RHP9 1530 aa32.96■■■□□ 2.87
GCDH-202ENST00000421816 TRIM41Q8WV44 630 aa32.94■■■□□ 2.86
GCDH-202ENST00000421816 OSCARQ8IYS5 282 aa32.93■■■□□ 2.86
GCDH-202ENST00000421816 KIF27Q86VH2 1401 aa32.92■■■□□ 2.86
GCDH-202ENST00000421816 SYNJ2O15056 1496 aa32.91■■■□□ 2.86
GCDH-202ENST00000421816 ADAMTS12P58397 1594 aa32.87■■■□□ 2.85
GCDH-202ENST00000421816 FBLN2P98095 1184 aa32.85■■■□□ 2.85
GCDH-202ENST00000421816 CHMP7Q8WUX9 453 aaPredicted RBP32.82■■■□□ 2.84
GCDH-202ENST00000421816 FHAD1B1AJZ9 1412 aa32.8■■■□□ 2.84
GCDH-202ENST00000421816 IGF1RP08069 1367 aa32.77■■■□□ 2.84
GCDH-202ENST00000421816 GRIN2AQ12879 1464 aa32.73■■■□□ 2.83
GCDH-202ENST00000421816 CHIC1Q5VXU3 224 aa32.71■■■□□ 2.83
GCDH-202ENST00000421816 CUL7Q14999 1698 aa32.71■■■□□ 2.83
GCDH-202ENST00000421816 RUSC2Q8N2Y8 1516 aa32.71■■■□□ 2.83
GCDH-202ENST00000421816 CLASP1Q7Z460 1538 aa32.64■■■□□ 2.82
GCDH-202ENST00000421816 NUP160Q12769 1436 aa32.59■■■□□ 2.81
GCDH-202ENST00000421816 CEP170Q5SW79 1584 aa32.57■■■□□ 2.8
GCDH-202ENST00000421816 CARMIL1Q5VZK9 1371 aa32.57■■■□□ 2.8
GCDH-202ENST00000421816 EEA1Q15075 1411 aa32.44■■■□□ 2.78
GCDH-202ENST00000421816 RIMBP3CA6NJZ7 1639 aa32.44■■■□□ 2.78
GCDH-202ENST00000421816 RIMBP3BA6NNM3 1639 aa32.44■■■□□ 2.78
GCDH-202ENST00000421816 RIMBP3Q9UFD9 1639 aa32.44■■■□□ 2.78
GCDH-202ENST00000421816 ARHGEF11O15085 1522 aa32.43■■■□□ 2.78
GCDH-202ENST00000421816 RAPGEF2Q9Y4G8 1499 aa32.42■■■□□ 2.78
GCDH-202ENST00000421816 PRXQ9BXM0 1461 aa32.37■■■□□ 2.77
Retrieved 100 of 20,778 RNA–protein pairs in 172.5 ms