RNA–Protein interactions for RNA: ENST00000420996.2

UPF3AP3-201, Transcript of UPF3A pseudogene 3, humanhuman

BASIC

Gene UPF3AP3, Length 769 nt, Biotype transcribed processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AP3-201ENST00000420996 NISCHQ9Y2I1 1504 aa42.55■■■■■ 4.4
UPF3AP3-201ENST00000420996 ABCC9O60706 1549 aa38.38■■■■□ 3.74
UPF3AP3-201ENST00000420996 CCDC180Q9P1Z9 1646 aa38.27■■■■□ 3.72
UPF3AP3-201ENST00000420996 RB1CC1Q8TDY2 1594 aa36.5■■■■□ 3.43
UPF3AP3-201ENST00000420996 NACADO15069 1562 aa36.22■■■■□ 3.39
UPF3AP3-201ENST00000420996 DNAJC5BQ9UF47 199 aa36.16■■■■□ 3.38
UPF3AP3-201ENST00000420996 DCAF8L2P0C7V8 631 aa35.96■■■■□ 3.35
UPF3AP3-201ENST00000420996 PABPN1Q86U42 306 aaKnown RBP eCLIP35.7■■■■□ 3.31
UPF3AP3-201ENST00000420996 MYO15BQ96JP2 1530 aa35.68■■■■□ 3.3
UPF3AP3-201ENST00000420996 UNC13AQ9UPW8 1703 aa35.68■■■■□ 3.3
UPF3AP3-201ENST00000420996 BICRAQ9NZM4 1560 aa35.43■■■■□ 3.26
UPF3AP3-201ENST00000420996 ZCCHC6Q5VYS8 1495 aaKnown RBP35.22■■■■□ 3.23
UPF3AP3-201ENST00000420996 DCAF1Q9Y4B6 1507 aa35.16■■■■□ 3.22
UPF3AP3-201ENST00000420996 SHROOM4Q9ULL8 1493 aa34.96■■■■□ 3.19
UPF3AP3-201ENST00000420996 SCRIBQ14160 1630 aa34.81■■■■□ 3.16
UPF3AP3-201ENST00000420996 CC2D2AQ9P2K1 1620 aa34.69■■■■□ 3.14
UPF3AP3-201ENST00000420996 CECR2Q9BXF3 1484 aa34.6■■■■□ 3.13
UPF3AP3-201ENST00000420996 EIF4G1Q04637 1599 aaKnown RBP34.57■■■■□ 3.12
UPF3AP3-201ENST00000420996 NCAPD3P42695 1498 aa33.44■■■□□ 2.94
UPF3AP3-201ENST00000420996 DNAJC5Q9H3Z4 198 aa33.35■■■□□ 2.93
UPF3AP3-201ENST00000420996 ATAD2BQ9ULI0 1458 aa33.3■■■□□ 2.92
UPF3AP3-201ENST00000420996 SMARCA4P51532 1647 aa33.22■■■□□ 2.91
UPF3AP3-201ENST00000420996 SMARCA2P51531 1590 aa33.21■■■□□ 2.91
UPF3AP3-201ENST00000420996 CUX2O14529 1486 aa33.18■■■□□ 2.9
UPF3AP3-201ENST00000420996 HMGXB3Q12766 1538 aa33.17■■■□□ 2.9
UPF3AP3-201ENST00000420996 ERCC6Q03468 1493 aa33.16■■■□□ 2.9
UPF3AP3-201ENST00000420996 BAZ1AQ9NRL2 1556 aaPredicted RBP33.04■■■□□ 2.88
UPF3AP3-201ENST00000420996 BAZ1BQ9UIG0 1483 aaKnown RBP32.96■■■□□ 2.87
UPF3AP3-201ENST00000420996 NESP48681 1621 aa32.92■■■□□ 2.86
UPF3AP3-201ENST00000420996 PEG3Q9GZU2 1588 aa32.92■■■□□ 2.86
UPF3AP3-201ENST00000420996 MROH2BQ7Z745 1585 aa32.77■■■□□ 2.84
UPF3AP3-201ENST00000420996 LAMC3Q9Y6N6 1575 aa32.7■■■□□ 2.83
UPF3AP3-201ENST00000420996 THOC2Q8NI27 1593 aaKnown RBP32.64■■■□□ 2.82
UPF3AP3-201ENST00000420996 PDS5BQ9NTI5 1447 aa32.52■■■□□ 2.8
UPF3AP3-201ENST00000420996 KIF21AQ7Z4S6 1674 aa32.51■■■□□ 2.79
UPF3AP3-201ENST00000420996 CADPSQ9ULU8 1353 aa32.4■■■□□ 2.78
UPF3AP3-201ENST00000420996 WIZO95785 1651 aa32.37■■■□□ 2.77
UPF3AP3-201ENST00000420996 MRC2Q9UBG0 1479 aa32.23■■■□□ 2.75
UPF3AP3-201ENST00000420996 WDR62O43379 1518 aa32.16■■■□□ 2.74
UPF3AP3-201ENST00000420996 CEP164Q9UPV0 1460 aa32.08■■■□□ 2.73
UPF3AP3-201ENST00000420996 RSF1Q96T23 1441 aaPredicted RBP32.04■■■□□ 2.72
UPF3AP3-201ENST00000420996 FANCD2Q9BXW9 1451 aa32.03■■■□□ 2.72
UPF3AP3-201ENST00000420996 CFTRP13569 1480 aa32■■■□□ 2.71
UPF3AP3-201ENST00000420996 TOP2AP11388 1531 aaKnown RBP31.95■■■□□ 2.71
UPF3AP3-201ENST00000420996 TRIM41Q8WV44 630 aa31.78■■■□□ 2.68
UPF3AP3-201ENST00000420996 URB2Q14146 1524 aaKnown RBP31.77■■■□□ 2.68
UPF3AP3-201ENST00000420996 PRDM2Q13029 1718 aa31.69■■■□□ 2.66
UPF3AP3-201ENST00000420996 OSCARQ8IYS5 282 aa31.65■■■□□ 2.66
UPF3AP3-201ENST00000420996 CCDC88BA6NC98 1476 aa31.59■■■□□ 2.65
UPF3AP3-201ENST00000420996 IFT140Q96RY7 1462 aa31.45■■■□□ 2.62
UPF3AP3-201ENST00000420996 TOPBP1Q92547 1522 aa31.4■■■□□ 2.62
UPF3AP3-201ENST00000420996 ZNF608Q9ULD9 1512 aaPredicted RBP31.39■■■□□ 2.62
UPF3AP3-201ENST00000420996 ABCC8Q09428 1581 aa31.36■■■□□ 2.61
UPF3AP3-201ENST00000420996 DNMBPQ6XZF7 1577 aa31.28■■■□□ 2.6
UPF3AP3-201ENST00000420996 RIMBP3CA6NJZ7 1639 aa31.23■■■□□ 2.59
UPF3AP3-201ENST00000420996 RIMBP3BA6NNM3 1639 aa31.23■■■□□ 2.59
UPF3AP3-201ENST00000420996 RIMBP3Q9UFD9 1639 aa31.23■■■□□ 2.59
UPF3AP3-201ENST00000420996 EIF4G3O43432 1585 aaKnown RBP31.22■■■□□ 2.59
UPF3AP3-201ENST00000420996 TARBP1Q13395 1621 aaKnown RBP31.15■■■□□ 2.58
UPF3AP3-201ENST00000420996 ARHGEF11O15085 1522 aa31.11■■■□□ 2.57
UPF3AP3-201ENST00000420996 AQRO60306 1485 aaKnown RBP eCLIP31.09■■■□□ 2.57
UPF3AP3-201ENST00000420996 POLA1P09884 1462 aaPredicted RBP31.07■■■□□ 2.56
UPF3AP3-201ENST00000420996 CHD1O14646 1710 aa31.03■■■□□ 2.56
UPF3AP3-201ENST00000420996 RAD54L2Q9Y4B4 1467 aa30.95■■■□□ 2.54
UPF3AP3-201ENST00000420996 SOGA1O94964 1423 aa30.94■■■□□ 2.54
UPF3AP3-201ENST00000420996 FBLN2P98095 1184 aa30.92■■■□□ 2.54
UPF3AP3-201ENST00000420996 CYB5RLQ6IPT4 315 aa30.9■■■□□ 2.54
UPF3AP3-201ENST00000420996 TDRD9Q8NDG6 1382 aaKnown RBP30.88■■■□□ 2.53
UPF3AP3-201ENST00000420996 FGD5Q6ZNL6 1462 aa30.84■■■□□ 2.53
UPF3AP3-201ENST00000420996 WDR97A6NE52 1622 aa30.84■■■□□ 2.53
UPF3AP3-201ENST00000420996 CUX1P39880 1505 aa30.8■■■□□ 2.52
UPF3AP3-201ENST00000420996 ARAP1Q96P48 1450 aa30.79■■■□□ 2.52
UPF3AP3-201ENST00000420996 SNAPC4Q5SXM2 1469 aa30.76■■■□□ 2.52
UPF3AP3-201ENST00000420996 MAGI1Q96QZ7 1491 aaPredicted RBP30.7■■■□□ 2.51
UPF3AP3-201ENST00000420996 CHMP7Q8WUX9 453 aaPredicted RBP30.69■■■□□ 2.5
UPF3AP3-201ENST00000420996 GRIN2BQ13224 1484 aa30.69■■■□□ 2.5
UPF3AP3-201ENST00000420996 CLASP1Q7Z460 1538 aa30.67■■■□□ 2.5
UPF3AP3-201ENST00000420996 SYNJ1O43426 1573 aa30.64■■■□□ 2.5
UPF3AP3-201ENST00000420996 SYNJ2O15056 1496 aa30.6■■■□□ 2.49
UPF3AP3-201ENST00000420996 TRHP20396 242 aaPredicted RBP30.6■■■□□ 2.49
UPF3AP3-201ENST00000420996 GAPVD1Q14C86 1478 aa30.56■■■□□ 2.48
UPF3AP3-201ENST00000420996 PBRM1Q86U86 1689 aa30.55■■■□□ 2.48
UPF3AP3-201ENST00000420996 ABCA10Q8WWZ4 1543 aa30.5■■■□□ 2.47
UPF3AP3-201ENST00000420996 SUPT5HO00267 1087 aaKnown RBP30.48■■■□□ 2.47
UPF3AP3-201ENST00000420996 ABCA5Q8WWZ7 1642 aa30.47■■■□□ 2.47
UPF3AP3-201ENST00000420996 WRNQ14191 1432 aaPredicted RBP eCLIP30.35■■■□□ 2.45
UPF3AP3-201ENST00000420996 BIVM-ERCC5R4GMW8 1640 aa30.29■■■□□ 2.44
UPF3AP3-201ENST00000420996 GRIN2AQ12879 1464 aa30.28■■■□□ 2.44
UPF3AP3-201ENST00000420996 TOP2BQ02880 1626 aa30.27■■■□□ 2.44
UPF3AP3-201ENST00000420996 ADAMTS12P58397 1594 aa30.24■■■□□ 2.43
UPF3AP3-201ENST00000420996 NUP160Q12769 1436 aa30.19■■■□□ 2.42
UPF3AP3-201ENST00000420996 CEP170Q5SW79 1584 aa30.17■■■□□ 2.42
UPF3AP3-201ENST00000420996 ERCC6L2Q5T890 1561 aa30.16■■■□□ 2.42
UPF3AP3-201ENST00000420996 FHAD1B1AJZ9 1412 aa30.16■■■□□ 2.42
UPF3AP3-201ENST00000420996 ERICH3Q5RHP9 1530 aa30.12■■■□□ 2.41
UPF3AP3-201ENST00000420996 SHROOM2Q13796 1616 aa30.08■■■□□ 2.41
UPF3AP3-201ENST00000420996 PRG4Q92954 1404 aaPredicted RBP29.91■■■□□ 2.38
UPF3AP3-201ENST00000420996 JPH4Q96JJ6 628 aa29.9■■■□□ 2.38
UPF3AP3-201ENST00000420996 AEBP2Q6ZN18 517 aaPredicted RBP29.84■■■□□ 2.37
UPF3AP3-201ENST00000420996 RUSC2Q8N2Y8 1516 aa29.81■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms