RNA–Protein interactions for RNA: ENST00000420101.6

SEMA4D-204, Transcript of semaphorin 4D, humanhuman

TSL 1 (best) BASIC

Gene SEMA4D, Length 1,837 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-204ENST00000420101 NISCHQ9Y2I1 1504 aa32.29■■■□□ 2.76
SEMA4D-204ENST00000420101 CCDC180Q9P1Z9 1646 aa28.06■■■□□ 2.08
SEMA4D-204ENST00000420101 ZCCHC6Q5VYS8 1495 aaKnown RBP27.11■■□□□ 1.93
SEMA4D-204ENST00000420101 DCAF8L2P0C7V8 631 aa27■■□□□ 1.91
SEMA4D-204ENST00000420101 ABCC9O60706 1549 aa26.72■■□□□ 1.87
SEMA4D-204ENST00000420101 SHROOM4Q9ULL8 1493 aa26.61■■□□□ 1.85
SEMA4D-204ENST00000420101 DCAF1Q9Y4B6 1507 aa26.61■■□□□ 1.85
SEMA4D-204ENST00000420101 MYO15BQ96JP2 1530 aa26.27■■□□□ 1.8
SEMA4D-204ENST00000420101 NACADO15069 1562 aa26.19■■□□□ 1.78
SEMA4D-204ENST00000420101 RB1CC1Q8TDY2 1594 aa26■■□□□ 1.75
SEMA4D-204ENST00000420101 SCRIBQ14160 1630 aa25.97■■□□□ 1.75
SEMA4D-204ENST00000420101 SUPT5HO00267 1087 aaKnown RBP25.65■■□□□ 1.7
SEMA4D-204ENST00000420101 UNC13AQ9UPW8 1703 aa25.36■■□□□ 1.65
SEMA4D-204ENST00000420101 PABPN1Q86U42 306 aaKnown RBP eCLIP25.28■■□□□ 1.64
SEMA4D-204ENST00000420101 CECR2Q9BXF3 1484 aa25.14■■□□□ 1.62
SEMA4D-204ENST00000420101 BICRAQ9NZM4 1560 aa25.14■■□□□ 1.61
SEMA4D-204ENST00000420101 RSF1Q96T23 1441 aaPredicted RBP25.1■■□□□ 1.61
SEMA4D-204ENST00000420101 MROH2BQ7Z745 1585 aa24.98■■□□□ 1.59
SEMA4D-204ENST00000420101 BAZ1AQ9NRL2 1556 aaPredicted RBP24.95■■□□□ 1.59
SEMA4D-204ENST00000420101 SMARCA4P51532 1647 aa24.81■■□□□ 1.56
SEMA4D-204ENST00000420101 WIZO95785 1651 aa24.78■■□□□ 1.56
SEMA4D-204ENST00000420101 TOP2AP11388 1531 aaKnown RBP24.5■■□□□ 1.51
SEMA4D-204ENST00000420101 EIF4G1Q04637 1599 aaKnown RBP24.44■■□□□ 1.5
SEMA4D-204ENST00000420101 CHIC1Q5VXU3 224 aa24.44■■□□□ 1.5
SEMA4D-204ENST00000420101 ATAD2BQ9ULI0 1458 aa24.43■■□□□ 1.5
SEMA4D-204ENST00000420101 PEG3Q9GZU2 1588 aa24.42■■□□□ 1.5
SEMA4D-204ENST00000420101 SMARCA2P51531 1590 aa24.41■■□□□ 1.5
SEMA4D-204ENST00000420101 BAZ1BQ9UIG0 1483 aaKnown RBP24.35■■□□□ 1.49
SEMA4D-204ENST00000420101 HRCP23327 699 aa24.32■■□□□ 1.48
SEMA4D-204ENST00000420101 CCDC88BA6NC98 1476 aa24.29■■□□□ 1.48
SEMA4D-204ENST00000420101 NCAPD3P42695 1498 aa24.18■■□□□ 1.46
SEMA4D-204ENST00000420101 HMGXB3Q12766 1538 aa24.12■■□□□ 1.45
SEMA4D-204ENST00000420101 CC2D2AQ9P2K1 1620 aa24.09■■□□□ 1.45
SEMA4D-204ENST00000420101 TRIM41Q8WV44 630 aa24.07■■□□□ 1.44
SEMA4D-204ENST00000420101 PELP1Q8IZL8 1130 aaKnown RBP23.91■■□□□ 1.42
SEMA4D-204ENST00000420101 ABCC8Q09428 1581 aa23.82■■□□□ 1.4
SEMA4D-204ENST00000420101 FAM9AQ8IZU1 332 aaPredicted RBP23.71■■□□□ 1.39
SEMA4D-204ENST00000420101 WRNQ14191 1432 aaPredicted RBP eCLIP23.67■■□□□ 1.38
SEMA4D-204ENST00000420101 CFTRP13569 1480 aa23.67■■□□□ 1.38
SEMA4D-204ENST00000420101 CADPSQ9ULU8 1353 aa23.63■■□□□ 1.37
SEMA4D-204ENST00000420101 LOC105371045A0A1W2PR82 267 aa23.58■■□□□ 1.37
SEMA4D-204ENST00000420101 DNAJC5BQ9UF47 199 aa23.54■■□□□ 1.36
SEMA4D-204ENST00000420101 PCGF6Q9BYE7 350 aa23.52■■□□□ 1.36
SEMA4D-204ENST00000420101 SYNJ1O43426 1573 aa23.5■■□□□ 1.35
SEMA4D-204ENST00000420101 EHMT2Q96KQ7 1210 aa23.47■■□□□ 1.35
SEMA4D-204ENST00000420101 PRDM2Q13029 1718 aa23.44■■□□□ 1.34
SEMA4D-204ENST00000420101 NESP48681 1621 aa23.43■■□□□ 1.34
SEMA4D-204ENST00000420101 SOGA1O94964 1423 aa23.4■■□□□ 1.34
SEMA4D-204ENST00000420101 TOP2BQ02880 1626 aa23.39■■□□□ 1.33
SEMA4D-204ENST00000420101 FANCD2Q9BXW9 1451 aa23.38■■□□□ 1.33
SEMA4D-204ENST00000420101 LAMC3Q9Y6N6 1575 aa23.36■■□□□ 1.33
SEMA4D-204ENST00000420101 CUX1P39880 1505 aa23.35■■□□□ 1.33
SEMA4D-204ENST00000420101 BIVM-ERCC5R4GMW8 1640 aa23.33■■□□□ 1.33
SEMA4D-204ENST00000420101 EEA1Q15075 1411 aa23.32■■□□□ 1.32
SEMA4D-204ENST00000420101 RUSC2Q8N2Y8 1516 aa23.29■■□□□ 1.32
SEMA4D-204ENST00000420101 CSRNP3Q8WYN3 585 aa23.28■■□□□ 1.32
SEMA4D-204ENST00000420101 ZEB1P37275 1124 aaPredicted RBP23.27■■□□□ 1.32
SEMA4D-204ENST00000420101 PDS5BQ9NTI5 1447 aa23.27■■□□□ 1.32
SEMA4D-204ENST00000420101 PPARGC1BQ86YN6 1023 aaKnown RBP23.26■■□□□ 1.31
SEMA4D-204ENST00000420101 CEP164Q9UPV0 1460 aa23.24■■□□□ 1.31
SEMA4D-204ENST00000420101 MYT1Q01538 1121 aa23.19■■□□□ 1.3
SEMA4D-204ENST00000420101 TRIM26Q12899 539 aaPredicted RBP23.17■■□□□ 1.3
SEMA4D-204ENST00000420101 FGD5Q6ZNL6 1462 aa23.13■■□□□ 1.29
SEMA4D-204ENST00000420101 DNMBPQ6XZF7 1577 aa23.12■■□□□ 1.29
SEMA4D-204ENST00000420101 TOPBP1Q92547 1522 aa23.1■■□□□ 1.29
SEMA4D-204ENST00000420101 UBTFP17480 764 aaKnown RBP23.1■■□□□ 1.29
SEMA4D-204ENST00000420101 KIF27Q86VH2 1401 aa23.08■■□□□ 1.29
SEMA4D-204ENST00000420101 KIF21AQ7Z4S6 1674 aa23.07■■□□□ 1.28
SEMA4D-204ENST00000420101 URB2Q14146 1524 aaKnown RBP23.04■■□□□ 1.28
SEMA4D-204ENST00000420101 CUX2O14529 1486 aa23.03■■□□□ 1.28
SEMA4D-204ENST00000420101 GOLGA3Q08378 1498 aa23.03■■□□□ 1.28
SEMA4D-204ENST00000420101 POLA1P09884 1462 aaPredicted RBP22.99■■□□□ 1.27
SEMA4D-204ENST00000420101 RAD54L2Q9Y4B4 1467 aa22.97■■□□□ 1.27
SEMA4D-204ENST00000420101 ERCC6Q03468 1493 aa22.96■■□□□ 1.27
SEMA4D-204ENST00000420101 KIF21BO75037 1637 aa22.96■■□□□ 1.27
SEMA4D-204ENST00000420101 TNIKQ9UKE5 1360 aa22.95■■□□□ 1.26
SEMA4D-204ENST00000420101 MRC2Q9UBG0 1479 aa22.93■■□□□ 1.26
SEMA4D-204ENST00000420101 RAPGEF2Q9Y4G8 1499 aa22.9■■□□□ 1.26
SEMA4D-204ENST00000420101 ABCA10Q8WWZ4 1543 aa22.87■■□□□ 1.25
SEMA4D-204ENST00000420101 CEP162Q5TB80 1403 aa22.86■■□□□ 1.25
SEMA4D-204ENST00000420101 PRXQ9BXM0 1461 aa22.85■■□□□ 1.25
SEMA4D-204ENST00000420101 IGF1RP08069 1367 aa22.84■■□□□ 1.25
SEMA4D-204ENST00000420101 RANGAP1P46060 587 aaPredicted RBP22.8■■□□□ 1.24
SEMA4D-204ENST00000420101 ERICH3Q5RHP9 1530 aa22.8■■□□□ 1.24
SEMA4D-204ENST00000420101 TDRD9Q8NDG6 1382 aaKnown RBP22.78■■□□□ 1.24
SEMA4D-204ENST00000420101 CARMIL1Q5VZK9 1371 aa22.78■■□□□ 1.24
SEMA4D-204ENST00000420101 SCAF1Q9H7N4 1312 aaKnown RBP22.76■■□□□ 1.23
SEMA4D-204ENST00000420101 WDR62O43379 1518 aa22.74■■□□□ 1.23
SEMA4D-204ENST00000420101 WDR97A6NE52 1622 aa22.71■■□□□ 1.23
SEMA4D-204ENST00000420101 GAPVD1Q14C86 1478 aa22.7■■□□□ 1.22
SEMA4D-204ENST00000420101 CLIP1P30622 1438 aa22.7■■□□□ 1.22
SEMA4D-204ENST00000420101 TARBP1Q13395 1621 aaKnown RBP22.68■■□□□ 1.22
SEMA4D-204ENST00000420101 IFT140Q96RY7 1462 aa22.66■■□□□ 1.22
SEMA4D-204ENST00000420101 THOC2Q8NI27 1593 aaKnown RBP22.65■■□□□ 1.22
SEMA4D-204ENST00000420101 ABCA5Q8WWZ7 1642 aa22.64■■□□□ 1.22
SEMA4D-204ENST00000420101 AQRO60306 1485 aaKnown RBP eCLIP22.61■■□□□ 1.21
SEMA4D-204ENST00000420101 CUL7Q14999 1698 aa22.61■■□□□ 1.21
SEMA4D-204ENST00000420101 ZNF608Q9ULD9 1512 aaPredicted RBP22.54■■□□□ 1.2
SEMA4D-204ENST00000420101 GRIN2BQ13224 1484 aa22.51■■□□□ 1.19
SEMA4D-204ENST00000420101 PBRM1Q86U86 1689 aa22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms