RNA–Protein interactions for RNA: ENST00000418436.5

RFC1-203, Transcript of replication factor C subunit 1, humanhuman

TSL 1 (best)

Gene RFC1, Length 1,255 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-203ENST00000418436 AEBP2Q6ZN18 517 aaPredicted RBP29.03■■■□□ 2.24
RFC1-203ENST00000418436 CHIC1Q5VXU3 224 aa27.94■■■□□ 2.06
RFC1-203ENST00000418436 NISCHQ9Y2I1 1504 aa25.57■■□□□ 1.68
RFC1-203ENST00000418436 SENP3Q9H4L4 574 aaPredicted RBP24.73■■□□□ 1.55
RFC1-203ENST00000418436 PHF23Q9BUL5 403 aaPredicted RBP24.5■■□□□ 1.51
RFC1-203ENST00000418436 FOXD1Q16676 465 aa22.98■■□□□ 1.27
RFC1-203ENST00000418436 CCDC180Q9P1Z9 1646 aa22.74■■□□□ 1.23
RFC1-203ENST00000418436 PLPPR3Q6T4P5 718 aa22.49■■□□□ 1.19
RFC1-203ENST00000418436 ABCC9O60706 1549 aa22.13■■□□□ 1.13
RFC1-203ENST00000418436 PPP6R1Q9UPN7 881 aa21.75■■□□□ 1.07
RFC1-203ENST00000418436 ADRA2BP18089 450 aa21.69■■□□□ 1.06
RFC1-203ENST00000418436 PIAS4Q8N2W9 510 aaPredicted RBP21.56■■□□□ 1.04
RFC1-203ENST00000418436 MSH5O43196 834 aa21.39■■□□□ 1.01
RFC1-203ENST00000418436 NACADO15069 1562 aa21.35■■□□□ 1.01
RFC1-203ENST00000418436 RB1CC1Q8TDY2 1594 aa21.35■■□□□ 1.01
RFC1-203ENST00000418436 ZCCHC6Q5VYS8 1495 aaKnown RBP21.3■■□□□ 1
RFC1-203ENST00000418436 MYO15BQ96JP2 1530 aa21.26■□□□□ 0.99
RFC1-203ENST00000418436 DCAF8L2P0C7V8 631 aa21.24■□□□□ 0.99
RFC1-203ENST00000418436 DCAF1Q9Y4B6 1507 aa21.19■□□□□ 0.98
RFC1-203ENST00000418436 UNC13AQ9UPW8 1703 aa20.92■□□□□ 0.94
RFC1-203ENST00000418436 BICRAQ9NZM4 1560 aa20.73■□□□□ 0.91
RFC1-203ENST00000418436 SCRIBQ14160 1630 aa20.69■□□□□ 0.9
RFC1-203ENST00000418436 PABPN1Q86U42 306 aaKnown RBP eCLIP20.67■□□□□ 0.9
RFC1-203ENST00000418436 SHROOM4Q9ULL8 1493 aa20.5■□□□□ 0.87
RFC1-203ENST00000418436 DNAJC5BQ9UF47 199 aa20.31■□□□□ 0.84
RFC1-203ENST00000418436 POTEDQ86YR6 584 aa20.23■□□□□ 0.83
RFC1-203ENST00000418436 EIF4G1Q04637 1599 aaKnown RBP20.16■□□□□ 0.82
RFC1-203ENST00000418436 CC2D2AQ9P2K1 1620 aa20.06■□□□□ 0.8
RFC1-203ENST00000418436 CECR2Q9BXF3 1484 aa19.9■□□□□ 0.78
RFC1-203ENST00000418436 SCAF1Q9H7N4 1312 aaKnown RBP19.88■□□□□ 0.77
RFC1-203ENST00000418436 SMARCA4P51532 1647 aa19.83■□□□□ 0.76
RFC1-203ENST00000418436 BAZ1AQ9NRL2 1556 aaPredicted RBP19.8■□□□□ 0.76
RFC1-203ENST00000418436 MAPK8IP2Q13387 824 aaPredicted RBP19.8■□□□□ 0.76
RFC1-203ENST00000418436 PPP4R3CPQ6ZMV5 832 aa19.74■□□□□ 0.75
RFC1-203ENST00000418436 NCAPD3P42695 1498 aa19.7■□□□□ 0.74
RFC1-203ENST00000418436 ATAD2BQ9ULI0 1458 aa19.7■□□□□ 0.74
RFC1-203ENST00000418436 MROH2BQ7Z745 1585 aa19.7■□□□□ 0.74
RFC1-203ENST00000418436 SMARCA2P51531 1590 aa19.68■□□□□ 0.74
RFC1-203ENST00000418436 DMRT2Q9Y5R5 561 aa19.67■□□□□ 0.74
RFC1-203ENST00000418436 PEG3Q9GZU2 1588 aa19.66■□□□□ 0.74
RFC1-203ENST00000418436 HMGXB3Q12766 1538 aa19.61■□□□□ 0.73
RFC1-203ENST00000418436 BAZ1BQ9UIG0 1483 aaKnown RBP19.52■□□□□ 0.72
RFC1-203ENST00000418436 WIZO95785 1651 aa19.49■□□□□ 0.71
RFC1-203ENST00000418436 RSF1Q96T23 1441 aaPredicted RBP19.48■□□□□ 0.71
RFC1-203ENST00000418436 CNKSR2Q8WXI2 1034 aa19.31■□□□□ 0.68
RFC1-203ENST00000418436 TOP2AP11388 1531 aaKnown RBP19.28■□□□□ 0.68
RFC1-203ENST00000418436 NESP48681 1621 aa19.18■□□□□ 0.66
RFC1-203ENST00000418436 LAMC3Q9Y6N6 1575 aa19.17■□□□□ 0.66
RFC1-203ENST00000418436 CADPSQ9ULU8 1353 aa19.1■□□□□ 0.65
RFC1-203ENST00000418436 NCBP3Q53F19 620 aaKnown RBP19.1■□□□□ 0.65
RFC1-203ENST00000418436 HOXD11P31277 338 aaPredicted RBP19.09■□□□□ 0.65
RFC1-203ENST00000418436 CCDC88BA6NC98 1476 aa19.05■□□□□ 0.64
RFC1-203ENST00000418436 ERCC6Q03468 1493 aa19.05■□□□□ 0.64
RFC1-203ENST00000418436 RNF216Q9NWF9 866 aaPredicted RBP19.04■□□□□ 0.64
RFC1-203ENST00000418436 CFTRP13569 1480 aa19.02■□□□□ 0.63
RFC1-203ENST00000418436 PDS5BQ9NTI5 1447 aa19■□□□□ 0.63
RFC1-203ENST00000418436 KIF21AQ7Z4S6 1674 aa18.99■□□□□ 0.63
RFC1-203ENST00000418436 SUPT5HO00267 1087 aaKnown RBP18.95■□□□□ 0.62
RFC1-203ENST00000418436 PRDM2Q13029 1718 aa18.92■□□□□ 0.62
RFC1-203ENST00000418436 THOC2Q8NI27 1593 aaKnown RBP18.92■□□□□ 0.62
RFC1-203ENST00000418436 CUX2O14529 1486 aa18.89■□□□□ 0.61
RFC1-203ENST00000418436 FANCD2Q9BXW9 1451 aa18.87■□□□□ 0.61
RFC1-203ENST00000418436 CEP164Q9UPV0 1460 aa18.84■□□□□ 0.61
RFC1-203ENST00000418436 NPM3O75607 178 aaKnown RBP18.82■□□□□ 0.6
RFC1-203ENST00000418436 MRC2Q9UBG0 1479 aa18.82■□□□□ 0.6
RFC1-203ENST00000418436 KCNA4P22459 653 aa18.78■□□□□ 0.6
RFC1-203ENST00000418436 WDR62O43379 1518 aa18.78■□□□□ 0.6
RFC1-203ENST00000418436 DCAF8L1A6NGE4 600 aa18.77■□□□□ 0.6
RFC1-203ENST00000418436 URB2Q14146 1524 aaKnown RBP18.7■□□□□ 0.58
RFC1-203ENST00000418436 ABCC8Q09428 1581 aa18.6■□□□□ 0.57
RFC1-203ENST00000418436 TOPBP1Q92547 1522 aa18.59■□□□□ 0.57
RFC1-203ENST00000418436 DNMBPQ6XZF7 1577 aa18.58■□□□□ 0.56
RFC1-203ENST00000418436 CUX1P39880 1505 aa18.47■□□□□ 0.55
RFC1-203ENST00000418436 IFT140Q96RY7 1462 aa18.46■□□□□ 0.54
RFC1-203ENST00000418436 POLA1P09884 1462 aaPredicted RBP18.43■□□□□ 0.54
RFC1-203ENST00000418436 TARBP1Q13395 1621 aaKnown RBP18.41■□□□□ 0.54
RFC1-203ENST00000418436 FGD5Q6ZNL6 1462 aa18.39■□□□□ 0.53
RFC1-203ENST00000418436 ZNF608Q9ULD9 1512 aaPredicted RBP18.37■□□□□ 0.53
RFC1-203ENST00000418436 BIVM-ERCC5R4GMW8 1640 aa18.35■□□□□ 0.53
RFC1-203ENST00000418436 SOGA1O94964 1423 aa18.35■□□□□ 0.53
RFC1-203ENST00000418436 WRNQ14191 1432 aaPredicted RBP eCLIP18.35■□□□□ 0.53
RFC1-203ENST00000418436 RAD54L2Q9Y4B4 1467 aa18.34■□□□□ 0.53
RFC1-203ENST00000418436 TOP2BQ02880 1626 aa18.34■□□□□ 0.53
RFC1-203ENST00000418436 SYNJ1O43426 1573 aa18.32■□□□□ 0.52
RFC1-203ENST00000418436 EIF4G3O43432 1585 aaKnown RBP18.31■□□□□ 0.52
RFC1-203ENST00000418436 RNF39Q9H2S5 420 aa18.29■□□□□ 0.52
RFC1-203ENST00000418436 WDR97A6NE52 1622 aa18.28■□□□□ 0.52
RFC1-203ENST00000418436 AQRO60306 1485 aaKnown RBP eCLIP18.26■□□□□ 0.514e-9■□□□□ 9.9
RFC1-203ENST00000418436 DNAJC5Q9H3Z4 198 aa18.25■□□□□ 0.51
RFC1-203ENST00000418436 ABCA10Q8WWZ4 1543 aa18.23■□□□□ 0.51
RFC1-203ENST00000418436 TDRD9Q8NDG6 1382 aaKnown RBP18.22■□□□□ 0.51
RFC1-203ENST00000418436 ABCA5Q8WWZ7 1642 aa18.17■□□□□ 0.5
RFC1-203ENST00000418436 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.15■□□□□ 0.53e-7■■■■□ 20
RFC1-203ENST00000418436 GRIN2BQ13224 1484 aa18.14■□□□□ 0.49
RFC1-203ENST00000418436 GAPVD1Q14C86 1478 aa18.14■□□□□ 0.49
RFC1-203ENST00000418436 PBRM1Q86U86 1689 aa18.13■□□□□ 0.49
RFC1-203ENST00000418436 SNAPC4Q5SXM2 1469 aa18.09■□□□□ 0.49
RFC1-203ENST00000418436 MAGI1Q96QZ7 1491 aaPredicted RBP18.09■□□□□ 0.49
RFC1-203ENST00000418436 CACNB1Q02641 598 aaPredicted RBP18.09■□□□□ 0.49
RFC1-203ENST00000418436 OSCARQ8IYS5 282 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms