RNA–Protein interactions for RNA: ENST00000417122.6

ITGB1-204, Transcript of integrin subunit beta 1, humanhuman

TSL 4

Gene ITGB1, Length 569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-204ENST00000417122 NISCHQ9Y2I1 1504 aa38.44■■■■□ 3.74
ITGB1-204ENST00000417122 CCDC180Q9P1Z9 1646 aa34.31■■■■□ 3.08
ITGB1-204ENST00000417122 ABCC9O60706 1549 aa33.85■■■■□ 3.01
ITGB1-204ENST00000417122 RB1CC1Q8TDY2 1594 aa32.44■■■□□ 2.78
ITGB1-204ENST00000417122 NACADO15069 1562 aa32.32■■■□□ 2.77
ITGB1-204ENST00000417122 DCAF8L2P0C7V8 631 aa32.26■■■□□ 2.75
ITGB1-204ENST00000417122 MYO15BQ96JP2 1530 aa32.01■■■□□ 2.72
ITGB1-204ENST00000417122 ZCCHC6Q5VYS8 1495 aaKnown RBP31.95■■■□□ 2.7
ITGB1-204ENST00000417122 DCAF1Q9Y4B6 1507 aa31.78■■■□□ 2.68
ITGB1-204ENST00000417122 UNC13AQ9UPW8 1703 aa31.73■■■□□ 2.67
ITGB1-204ENST00000417122 PABPN1Q86U42 306 aaKnown RBP eCLIP31.58■■■□□ 2.65
ITGB1-204ENST00000417122 BICRAQ9NZM4 1560 aa31.46■■■□□ 2.63
ITGB1-204ENST00000417122 DNAJC5BQ9UF47 199 aa31.32■■■□□ 2.6
ITGB1-204ENST00000417122 SCRIBQ14160 1630 aa31.29■■■□□ 2.6
ITGB1-204ENST00000417122 SHROOM4Q9ULL8 1493 aa31.08■■■□□ 2.57
ITGB1-204ENST00000417122 EIF4G1Q04637 1599 aaKnown RBP30.66■■■□□ 2.5
ITGB1-204ENST00000417122 CC2D2AQ9P2K1 1620 aa30.62■■■□□ 2.49
ITGB1-204ENST00000417122 CECR2Q9BXF3 1484 aa30.44■■■□□ 2.46
ITGB1-204ENST00000417122 SMARCA4P51532 1647 aa29.89■■■□□ 2.38
ITGB1-204ENST00000417122 NCAPD3P42695 1498 aa29.82■■■□□ 2.36
ITGB1-204ENST00000417122 BAZ1AQ9NRL2 1556 aaPredicted RBP29.81■■■□□ 2.36
ITGB1-204ENST00000417122 ATAD2BQ9ULI0 1458 aa29.8■■■□□ 2.36
ITGB1-204ENST00000417122 SMARCA2P51531 1590 aa29.75■■■□□ 2.35
ITGB1-204ENST00000417122 HMGXB3Q12766 1538 aa29.66■■■□□ 2.34
ITGB1-204ENST00000417122 MROH2BQ7Z745 1585 aa29.62■■■□□ 2.33
ITGB1-204ENST00000417122 PEG3Q9GZU2 1588 aa29.6■■■□□ 2.33
ITGB1-204ENST00000417122 BAZ1BQ9UIG0 1483 aaKnown RBP29.55■■■□□ 2.32
ITGB1-204ENST00000417122 WIZO95785 1651 aa29.31■■■□□ 2.28
ITGB1-204ENST00000417122 NESP48681 1621 aa29.21■■■□□ 2.27
ITGB1-204ENST00000417122 ERCC6Q03468 1493 aa29.2■■■□□ 2.26
ITGB1-204ENST00000417122 RSF1Q96T23 1441 aaPredicted RBP29.17■■■□□ 2.26
ITGB1-204ENST00000417122 LAMC3Q9Y6N6 1575 aa29.09■■■□□ 2.25
ITGB1-204ENST00000417122 CUX2O14529 1486 aa28.99■■■□□ 2.23
ITGB1-204ENST00000417122 TOP2AP11388 1531 aaKnown RBP28.96■■■□□ 2.23
ITGB1-204ENST00000417122 CADPSQ9ULU8 1353 aa28.94■■■□□ 2.22
ITGB1-204ENST00000417122 PDS5BQ9NTI5 1447 aa28.9■■■□□ 2.22
ITGB1-204ENST00000417122 KIF21AQ7Z4S6 1674 aa28.88■■■□□ 2.21
ITGB1-204ENST00000417122 THOC2Q8NI27 1593 aaKnown RBP28.83■■■□□ 2.21
ITGB1-204ENST00000417122 CFTRP13569 1480 aa28.71■■■□□ 2.19
ITGB1-204ENST00000417122 CCDC88BA6NC98 1476 aa28.62■■■□□ 2.17
ITGB1-204ENST00000417122 MRC2Q9UBG0 1479 aa28.62■■■□□ 2.17
ITGB1-204ENST00000417122 FANCD2Q9BXW9 1451 aa28.61■■■□□ 2.17
ITGB1-204ENST00000417122 CEP164Q9UPV0 1460 aa28.6■■■□□ 2.17
ITGB1-204ENST00000417122 WDR62O43379 1518 aa28.53■■■□□ 2.16
ITGB1-204ENST00000417122 PRDM2Q13029 1718 aa28.51■■■□□ 2.15
ITGB1-204ENST00000417122 DNAJC5Q9H3Z4 198 aa28.44■■■□□ 2.14
ITGB1-204ENST00000417122 URB2Q14146 1524 aaKnown RBP28.34■■■□□ 2.13
ITGB1-204ENST00000417122 SUPT5HO00267 1087 aaKnown RBP28.23■■■□□ 2.11
ITGB1-204ENST00000417122 TOPBP1Q92547 1522 aa28.13■■■□□ 2.09
ITGB1-204ENST00000417122 ABCC8Q09428 1581 aa28.11■■■□□ 2.09
ITGB1-204ENST00000417122 DNMBPQ6XZF7 1577 aa28.07■■■□□ 2.08
ITGB1-204ENST00000417122 IFT140Q96RY7 1462 aa28.02■■■□□ 2.08
ITGB1-204ENST00000417122 ZNF608Q9ULD9 1512 aaPredicted RBP27.92■■■□□ 2.06
ITGB1-204ENST00000417122 POLA1P09884 1462 aaPredicted RBP27.86■■■□□ 2.05
ITGB1-204ENST00000417122 TARBP1Q13395 1621 aaKnown RBP27.85■■■□□ 2.05
ITGB1-204ENST00000417122 CUX1P39880 1505 aa27.81■■■□□ 2.04
ITGB1-204ENST00000417122 EIF4G3O43432 1585 aaKnown RBP27.8■■■□□ 2.04
ITGB1-204ENST00000417122 FGD5Q6ZNL6 1462 aa27.76■■■□□ 2.03
ITGB1-204ENST00000417122 RAD54L2Q9Y4B4 1467 aa27.76■■■□□ 2.03
ITGB1-204ENST00000417122 SOGA1O94964 1423 aa27.75■■■□□ 2.03
ITGB1-204ENST00000417122 OSCARQ8IYS5 282 aa27.74■■■□□ 2.03
ITGB1-204ENST00000417122 AQRO60306 1485 aaKnown RBP eCLIP27.73■■■□□ 2.03
ITGB1-204ENST00000417122 TDRD9Q8NDG6 1382 aaKnown RBP27.62■■■□□ 2.01
ITGB1-204ENST00000417122 WDR97A6NE52 1622 aa27.6■■■□□ 2.01
ITGB1-204ENST00000417122 CHD1O14646 1710 aa27.53■■■□□ 2
ITGB1-204ENST00000417122 WRNQ14191 1432 aaPredicted RBP eCLIP27.52■■■□□ 2
ITGB1-204ENST00000417122 BIVM-ERCC5R4GMW8 1640 aa27.5■■□□□ 1.99
ITGB1-204ENST00000417122 TOP2BQ02880 1626 aa27.49■■□□□ 1.99
ITGB1-204ENST00000417122 ABCA10Q8WWZ4 1543 aa27.47■■□□□ 1.99
ITGB1-204ENST00000417122 SYNJ1O43426 1573 aa27.47■■□□□ 1.99
ITGB1-204ENST00000417122 SNAPC4Q5SXM2 1469 aa27.46■■□□□ 1.99
ITGB1-204ENST00000417122 FBLN2P98095 1184 aa27.46■■□□□ 1.99
ITGB1-204ENST00000417122 GRIN2BQ13224 1484 aa27.45■■□□□ 1.99
ITGB1-204ENST00000417122 GAPVD1Q14C86 1478 aa27.42■■□□□ 1.98
ITGB1-204ENST00000417122 PBRM1Q86U86 1689 aa27.41■■□□□ 1.98
ITGB1-204ENST00000417122 MAGI1Q96QZ7 1491 aaPredicted RBP27.41■■□□□ 1.98
ITGB1-204ENST00000417122 TRIM41Q8WV44 630 aa27.4■■□□□ 1.98
ITGB1-204ENST00000417122 ABCA5Q8WWZ7 1642 aa27.39■■□□□ 1.98
ITGB1-204ENST00000417122 CHMP7Q8WUX9 453 aaPredicted RBP27.34■■□□□ 1.97
ITGB1-204ENST00000417122 RIMBP3CA6NJZ7 1639 aa27.34■■□□□ 1.97
ITGB1-204ENST00000417122 RIMBP3BA6NNM3 1639 aa27.34■■□□□ 1.97
ITGB1-204ENST00000417122 RIMBP3Q9UFD9 1639 aa27.34■■□□□ 1.97
ITGB1-204ENST00000417122 SYNJ2O15056 1496 aa27.32■■□□□ 1.96
ITGB1-204ENST00000417122 ARHGEF11O15085 1522 aa27.29■■□□□ 1.96
ITGB1-204ENST00000417122 CLASP1Q7Z460 1538 aa27.2■■□□□ 1.94
ITGB1-204ENST00000417122 ADAMTS12P58397 1594 aa27.15■■□□□ 1.94
ITGB1-204ENST00000417122 ERICH3Q5RHP9 1530 aa27.14■■□□□ 1.94
ITGB1-204ENST00000417122 GRIN2AQ12879 1464 aa27.1■■□□□ 1.93
ITGB1-204ENST00000417122 FHAD1B1AJZ9 1412 aa27.08■■□□□ 1.93
ITGB1-204ENST00000417122 CYB5RLQ6IPT4 315 aa27.07■■□□□ 1.92
ITGB1-204ENST00000417122 ARAP1Q96P48 1450 aa27.05■■□□□ 1.92
ITGB1-204ENST00000417122 CEP170Q5SW79 1584 aa26.99■■□□□ 1.91
ITGB1-204ENST00000417122 NUP160Q12769 1436 aa26.99■■□□□ 1.91
ITGB1-204ENST00000417122 KIF27Q86VH2 1401 aa26.97■■□□□ 1.91
ITGB1-204ENST00000417122 IGF1RP08069 1367 aa26.89■■□□□ 1.9
ITGB1-204ENST00000417122 CUL7Q14999 1698 aa26.85■■□□□ 1.89
ITGB1-204ENST00000417122 SHROOM2Q13796 1616 aa26.83■■□□□ 1.88
ITGB1-204ENST00000417122 ERCC6L2Q5T890 1561 aa26.8■■□□□ 1.88
ITGB1-204ENST00000417122 RUSC2Q8N2Y8 1516 aa26.75■■□□□ 1.87
ITGB1-204ENST00000417122 CARMIL1Q5VZK9 1371 aa26.73■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms