RNA–Protein interactions for RNA: ENST00000416321.5

DEPDC4-203, Transcript of DEP domain containing 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene DEPDC4, Length 1,155 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-203ENST00000416321 NISCHQ9Y2I1 1504 aa23.28■■□□□ 1.32
DEPDC4-203ENST00000416321 AEBP2Q6ZN18 517 aaPredicted RBP22.78■■□□□ 1.24
DEPDC4-203ENST00000416321 CHIC1Q5VXU3 224 aa21.78■■□□□ 1.08
DEPDC4-203ENST00000416321 CCDC180Q9P1Z9 1646 aa20.45■□□□□ 0.87
DEPDC4-203ENST00000416321 ZCCHC6Q5VYS8 1495 aaKnown RBP19.53■□□□□ 0.72
DEPDC4-203ENST00000416321 ABCC9O60706 1549 aa19.46■□□□□ 0.71
DEPDC4-203ENST00000416321 SENP3Q9H4L4 574 aaPredicted RBP19.35■□□□□ 0.69
DEPDC4-203ENST00000416321 DCAF8L2P0C7V8 631 aa19.34■□□□□ 0.69
DEPDC4-203ENST00000416321 DCAF1Q9Y4B6 1507 aa19.27■□□□□ 0.68
DEPDC4-203ENST00000416321 PHF23Q9BUL5 403 aaPredicted RBP19.15■□□□□ 0.66
DEPDC4-203ENST00000416321 MYO15BQ96JP2 1530 aa19.11■□□□□ 0.65
DEPDC4-203ENST00000416321 NACADO15069 1562 aa19.08■□□□□ 0.65
DEPDC4-203ENST00000416321 RB1CC1Q8TDY2 1594 aa18.98■□□□□ 0.63
DEPDC4-203ENST00000416321 SHROOM4Q9ULL8 1493 aa18.87■□□□□ 0.61
DEPDC4-203ENST00000416321 SCRIBQ14160 1630 aa18.75■□□□□ 0.59
DEPDC4-203ENST00000416321 UNC13AQ9UPW8 1703 aa18.52■□□□□ 0.55
DEPDC4-203ENST00000416321 BICRAQ9NZM4 1560 aa18.3■□□□□ 0.52
DEPDC4-203ENST00000416321 PABPN1Q86U42 306 aaKnown RBP eCLIP18.28■□□□□ 0.52
DEPDC4-203ENST00000416321 FOXD1Q16676 465 aa18.09■□□□□ 0.49
DEPDC4-203ENST00000416321 SUPT5HO00267 1087 aaKnown RBP18.08■□□□□ 0.48
DEPDC4-203ENST00000416321 CECR2Q9BXF3 1484 aa18.06■□□□□ 0.48
DEPDC4-203ENST00000416321 BAZ1AQ9NRL2 1556 aaPredicted RBP18.04■□□□□ 0.48
DEPDC4-203ENST00000416321 RSF1Q96T23 1441 aaPredicted RBP17.97■□□□□ 0.47
DEPDC4-203ENST00000416321 SMARCA4P51532 1647 aa17.96■□□□□ 0.47
DEPDC4-203ENST00000416321 MROH2BQ7Z745 1585 aa17.96■□□□□ 0.46
DEPDC4-203ENST00000416321 EIF4G1Q04637 1599 aaKnown RBP17.83■□□□□ 0.44
DEPDC4-203ENST00000416321 WIZO95785 1651 aa17.82■□□□□ 0.44
DEPDC4-203ENST00000416321 PLPPR3Q6T4P5 718 aa17.73■□□□□ 0.43
DEPDC4-203ENST00000416321 SMARCA2P51531 1590 aa17.73■□□□□ 0.43
DEPDC4-203ENST00000416321 PEG3Q9GZU2 1588 aa17.72■□□□□ 0.43
DEPDC4-203ENST00000416321 ATAD2BQ9ULI0 1458 aa17.69■□□□□ 0.42
DEPDC4-203ENST00000416321 TOP2AP11388 1531 aaKnown RBP17.67■□□□□ 0.42
DEPDC4-203ENST00000416321 BAZ1BQ9UIG0 1483 aaKnown RBP17.63■□□□□ 0.41
DEPDC4-203ENST00000416321 CC2D2AQ9P2K1 1620 aa17.61■□□□□ 0.41
DEPDC4-203ENST00000416321 HMGXB3Q12766 1538 aa17.57■□□□□ 0.4
DEPDC4-203ENST00000416321 NCAPD3P42695 1498 aa17.56■□□□□ 0.4
DEPDC4-203ENST00000416321 CCDC88BA6NC98 1476 aa17.44■□□□□ 0.38
DEPDC4-203ENST00000416321 DNAJC5BQ9UF47 199 aa17.2■□□□□ 0.34
DEPDC4-203ENST00000416321 CFTRP13569 1480 aa17.12■□□□□ 0.33
DEPDC4-203ENST00000416321 CADPSQ9ULU8 1353 aa17.12■□□□□ 0.33
DEPDC4-203ENST00000416321 PRDM2Q13029 1718 aa17.1■□□□□ 0.33
DEPDC4-203ENST00000416321 TRIM41Q8WV44 630 aa17.06■□□□□ 0.32
DEPDC4-203ENST00000416321 LAMC3Q9Y6N6 1575 aa17.05■□□□□ 0.32
DEPDC4-203ENST00000416321 ABCC8Q09428 1581 aa17.02■□□□□ 0.32
DEPDC4-203ENST00000416321 NESP48681 1621 aa16.98■□□□□ 0.31
DEPDC4-203ENST00000416321 WRNQ14191 1432 aaPredicted RBP eCLIP16.97■□□□□ 0.31
DEPDC4-203ENST00000416321 PPP6R1Q9UPN7 881 aa16.97■□□□□ 0.31
DEPDC4-203ENST00000416321 FANCD2Q9BXW9 1451 aa16.94■□□□□ 0.3
DEPDC4-203ENST00000416321 PDS5BQ9NTI5 1447 aa16.94■□□□□ 0.3
DEPDC4-203ENST00000416321 ADRA2BP18089 450 aa16.93■□□□□ 0.3
DEPDC4-203ENST00000416321 PIAS4Q8N2W9 510 aaPredicted RBP16.9■□□□□ 0.3
DEPDC4-203ENST00000416321 CEP164Q9UPV0 1460 aa16.88■□□□□ 0.29
DEPDC4-203ENST00000416321 SYNJ1O43426 1573 aa16.87■□□□□ 0.29
DEPDC4-203ENST00000416321 MSH5O43196 834 aa16.85■□□□□ 0.29
DEPDC4-203ENST00000416321 TOP2BQ02880 1626 aa16.85■□□□□ 0.29
DEPDC4-203ENST00000416321 BIVM-ERCC5R4GMW8 1640 aa16.84■□□□□ 0.29
DEPDC4-203ENST00000416321 KIF21AQ7Z4S6 1674 aa16.81■□□□□ 0.28
DEPDC4-203ENST00000416321 CUX1P39880 1505 aa16.81■□□□□ 0.28
DEPDC4-203ENST00000416321 DNMBPQ6XZF7 1577 aa16.77■□□□□ 0.28
DEPDC4-203ENST00000416321 ERCC6Q03468 1493 aa16.77■□□□□ 0.28
DEPDC4-203ENST00000416321 TOPBP1Q92547 1522 aa16.72■□□□□ 0.27
DEPDC4-203ENST00000416321 MRC2Q9UBG0 1479 aa16.72■□□□□ 0.27
DEPDC4-203ENST00000416321 FAM9AQ8IZU1 332 aaPredicted RBP16.7■□□□□ 0.26
DEPDC4-203ENST00000416321 URB2Q14146 1524 aaKnown RBP16.7■□□□□ 0.26
DEPDC4-203ENST00000416321 FGD5Q6ZNL6 1462 aa16.69■□□□□ 0.26
DEPDC4-203ENST00000416321 EEA1Q15075 1411 aa16.69■□□□□ 0.26
DEPDC4-203ENST00000416321 SOGA1O94964 1423 aa16.65■□□□□ 0.26
DEPDC4-203ENST00000416321 POTEDQ86YR6 584 aa16.63■□□□□ 0.25
DEPDC4-203ENST00000416321 POLA1P09884 1462 aaPredicted RBP16.62■□□□□ 0.25
DEPDC4-203ENST00000416321 WDR62O43379 1518 aa16.61■□□□□ 0.25
DEPDC4-203ENST00000416321 KIF27Q86VH2 1401 aa16.59■□□□□ 0.25
DEPDC4-203ENST00000416321 THOC2Q8NI27 1593 aaKnown RBP16.59■□□□□ 0.25
DEPDC4-203ENST00000416321 RUSC2Q8N2Y8 1516 aa16.56■□□□□ 0.24
DEPDC4-203ENST00000416321 CUX2O14529 1486 aa16.56■□□□□ 0.24
DEPDC4-203ENST00000416321 CSRNP3Q8WYN3 585 aa16.56■□□□□ 0.24
DEPDC4-203ENST00000416321 RAD54L2Q9Y4B4 1467 aa16.54■□□□□ 0.24
DEPDC4-203ENST00000416321 ABCA10Q8WWZ4 1543 aa16.54■□□□□ 0.24
DEPDC4-203ENST00000416321 WDR97A6NE52 1622 aa16.49■□□□□ 0.23
DEPDC4-203ENST00000416321 IFT140Q96RY7 1462 aa16.48■□□□□ 0.23
DEPDC4-203ENST00000416321 LOC105371045A0A1W2PR82 267 aa16.48■□□□□ 0.23
DEPDC4-203ENST00000416321 EHMT2Q96KQ7 1210 aa16.47■□□□□ 0.23
DEPDC4-203ENST00000416321 TARBP1Q13395 1621 aaKnown RBP16.47■□□□□ 0.23
DEPDC4-203ENST00000416321 KIF21BO75037 1637 aa16.45■□□□□ 0.22
DEPDC4-203ENST00000416321 GOLGA3Q08378 1498 aa16.43■□□□□ 0.22
DEPDC4-203ENST00000416321 ABCA5Q8WWZ7 1642 aa16.41■□□□□ 0.22
DEPDC4-203ENST00000416321 TDRD9Q8NDG6 1382 aaKnown RBP16.41■□□□□ 0.22
DEPDC4-203ENST00000416321 GAPVD1Q14C86 1478 aa16.41■□□□□ 0.22
DEPDC4-203ENST00000416321 UBTFP17480 764 aaKnown RBP16.38■□□□□ 0.21
DEPDC4-203ENST00000416321 IGF1RP08069 1367 aa16.38■□□□□ 0.21
DEPDC4-203ENST00000416321 ERICH3Q5RHP9 1530 aa16.37■□□□□ 0.21
DEPDC4-203ENST00000416321 CUL7Q14999 1698 aa16.37■□□□□ 0.21
DEPDC4-203ENST00000416321 PRXQ9BXM0 1461 aa16.36■□□□□ 0.21
DEPDC4-203ENST00000416321 CARMIL1Q5VZK9 1371 aa16.35■□□□□ 0.21
DEPDC4-203ENST00000416321 PBRM1Q86U86 1689 aa16.34■□□□□ 0.21
DEPDC4-203ENST00000416321 AQRO60306 1485 aaKnown RBP eCLIP16.34■□□□□ 0.21
DEPDC4-203ENST00000416321 RAPGEF2Q9Y4G8 1499 aa16.34■□□□□ 0.21
DEPDC4-203ENST00000416321 ZNF608Q9ULD9 1512 aaPredicted RBP16.33■□□□□ 0.2
DEPDC4-203ENST00000416321 EIF4G3O43432 1585 aaKnown RBP16.32■□□□□ 0.2
DEPDC4-203ENST00000416321 GRIN2BQ13224 1484 aa16.32■□□□□ 0.2
DEPDC4-203ENST00000416321 TNIKQ9UKE5 1360 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms