RNA–Protein interactions for RNA: ENST00000414407.1

LINC00398-201, long intergenic non-protein coding RNA 398, humanhuman

TSL 2 BASIC

Gene LINC00398, Length 906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00398-201ENST00000414407 NISCHQ9Y2I1 1504 aa39.61■■■■□ 3.93
LINC00398-201ENST00000414407 CCDC180Q9P1Z9 1646 aa35.1■■■■□ 3.21
LINC00398-201ENST00000414407 ABCC9O60706 1549 aa34.06■■■■□ 3.04
LINC00398-201ENST00000414407 ZCCHC6Q5VYS8 1495 aaKnown RBP33.05■■■□□ 2.88
LINC00398-201ENST00000414407 NACADO15069 1562 aa32.98■■■□□ 2.87
LINC00398-201ENST00000414407 RB1CC1Q8TDY2 1594 aa32.94■■■□□ 2.86
LINC00398-201ENST00000414407 DCAF8L2P0C7V8 631 aa32.93■■■□□ 2.86
LINC00398-201ENST00000414407 MYO15BQ96JP2 1530 aa32.92■■■□□ 2.86
LINC00398-201ENST00000414407 DCAF1Q9Y4B6 1507 aa32.85■■■□□ 2.85
LINC00398-201ENST00000414407 UNC13AQ9UPW8 1703 aa32.1■■■□□ 2.73
LINC00398-201ENST00000414407 SCRIBQ14160 1630 aa31.98■■■□□ 2.71
LINC00398-201ENST00000414407 BICRAQ9NZM4 1560 aa31.9■■■□□ 2.7
LINC00398-201ENST00000414407 PABPN1Q86U42 306 aaKnown RBP eCLIP31.88■■■□□ 2.69
LINC00398-201ENST00000414407 SHROOM4Q9ULL8 1493 aa31.7■■■□□ 2.66
LINC00398-201ENST00000414407 DNAJC5BQ9UF47 199 aa31.07■■■□□ 2.56
LINC00398-201ENST00000414407 EIF4G1Q04637 1599 aaKnown RBP31.05■■■□□ 2.56
LINC00398-201ENST00000414407 CC2D2AQ9P2K1 1620 aa30.84■■■□□ 2.53
LINC00398-201ENST00000414407 CECR2Q9BXF3 1484 aa30.79■■■□□ 2.52
LINC00398-201ENST00000414407 BAZ1AQ9NRL2 1556 aaPredicted RBP30.7■■■□□ 2.5
LINC00398-201ENST00000414407 SMARCA4P51532 1647 aa30.65■■■□□ 2.5
LINC00398-201ENST00000414407 MROH2BQ7Z745 1585 aa30.49■■■□□ 2.47
LINC00398-201ENST00000414407 ATAD2BQ9ULI0 1458 aa30.46■■■□□ 2.47
LINC00398-201ENST00000414407 SMARCA2P51531 1590 aa30.45■■■□□ 2.46
LINC00398-201ENST00000414407 NCAPD3P42695 1498 aa30.44■■■□□ 2.46
LINC00398-201ENST00000414407 PEG3Q9GZU2 1588 aa30.41■■■□□ 2.46
LINC00398-201ENST00000414407 HMGXB3Q12766 1538 aa30.29■■■□□ 2.44
LINC00398-201ENST00000414407 RSF1Q96T23 1441 aaPredicted RBP30.27■■■□□ 2.44
LINC00398-201ENST00000414407 BAZ1BQ9UIG0 1483 aaKnown RBP30.21■■■□□ 2.43
LINC00398-201ENST00000414407 WIZO95785 1651 aa30.14■■■□□ 2.42
LINC00398-201ENST00000414407 TOP2AP11388 1531 aaKnown RBP29.9■■■□□ 2.38
LINC00398-201ENST00000414407 SUPT5HO00267 1087 aaKnown RBP29.62■■■□□ 2.33
LINC00398-201ENST00000414407 LAMC3Q9Y6N6 1575 aa29.57■■■□□ 2.32
LINC00398-201ENST00000414407 CADPSQ9ULU8 1353 aa29.56■■■□□ 2.32
LINC00398-201ENST00000414407 NESP48681 1621 aa29.54■■■□□ 2.32
LINC00398-201ENST00000414407 CCDC88BA6NC98 1476 aa29.54■■■□□ 2.32
LINC00398-201ENST00000414407 CFTRP13569 1480 aa29.43■■■□□ 2.3
LINC00398-201ENST00000414407 PDS5BQ9NTI5 1447 aa29.39■■■□□ 2.3
LINC00398-201ENST00000414407 ERCC6Q03468 1493 aa29.37■■■□□ 2.29
LINC00398-201ENST00000414407 FANCD2Q9BXW9 1451 aa29.18■■■□□ 2.26
LINC00398-201ENST00000414407 KIF21AQ7Z4S6 1674 aa29.18■■■□□ 2.26
LINC00398-201ENST00000414407 PRDM2Q13029 1718 aa29.15■■■□□ 2.26
LINC00398-201ENST00000414407 CEP164Q9UPV0 1460 aa29.12■■■□□ 2.25
LINC00398-201ENST00000414407 THOC2Q8NI27 1593 aaKnown RBP29.06■■■□□ 2.24
LINC00398-201ENST00000414407 MRC2Q9UBG0 1479 aa29.04■■■□□ 2.24
LINC00398-201ENST00000414407 CUX2O14529 1486 aa29.03■■■□□ 2.24
LINC00398-201ENST00000414407 WDR62O43379 1518 aa28.94■■■□□ 2.22
LINC00398-201ENST00000414407 URB2Q14146 1524 aaKnown RBP28.86■■■□□ 2.21
LINC00398-201ENST00000414407 ABCC8Q09428 1581 aa28.82■■■□□ 2.2
LINC00398-201ENST00000414407 TOPBP1Q92547 1522 aa28.74■■■□□ 2.19
LINC00398-201ENST00000414407 DNMBPQ6XZF7 1577 aa28.73■■■□□ 2.19
LINC00398-201ENST00000414407 CUX1P39880 1505 aa28.59■■■□□ 2.17
LINC00398-201ENST00000414407 IFT140Q96RY7 1462 aa28.53■■■□□ 2.16
LINC00398-201ENST00000414407 WRNQ14191 1432 aaPredicted RBP eCLIP28.53■■■□□ 2.16
LINC00398-201ENST00000414407 POLA1P09884 1462 aaPredicted RBP28.52■■■□□ 2.16
LINC00398-201ENST00000414407 FGD5Q6ZNL6 1462 aa28.46■■■□□ 2.15
LINC00398-201ENST00000414407 TOP2BQ02880 1626 aa28.43■■■□□ 2.14
LINC00398-201ENST00000414407 BIVM-ERCC5R4GMW8 1640 aa28.42■■■□□ 2.14
LINC00398-201ENST00000414407 SOGA1O94964 1423 aa28.42■■■□□ 2.14
LINC00398-201ENST00000414407 TARBP1Q13395 1621 aaKnown RBP28.4■■■□□ 2.14
LINC00398-201ENST00000414407 SYNJ1O43426 1573 aa28.4■■■□□ 2.14
LINC00398-201ENST00000414407 RAD54L2Q9Y4B4 1467 aa28.35■■■□□ 2.13
LINC00398-201ENST00000414407 ZNF608Q9ULD9 1512 aaPredicted RBP28.33■■■□□ 2.13
LINC00398-201ENST00000414407 WDR97A6NE52 1622 aa28.25■■■□□ 2.11
LINC00398-201ENST00000414407 ABCA10Q8WWZ4 1543 aa28.24■■■□□ 2.11
LINC00398-201ENST00000414407 EIF4G3O43432 1585 aaKnown RBP28.22■■■□□ 2.11
LINC00398-201ENST00000414407 AQRO60306 1485 aaKnown RBP eCLIP28.21■■■□□ 2.11
LINC00398-201ENST00000414407 TDRD9Q8NDG6 1382 aaKnown RBP28.2■■■□□ 2.1
LINC00398-201ENST00000414407 GAPVD1Q14C86 1478 aa28.08■■■□□ 2.09
LINC00398-201ENST00000414407 ABCA5Q8WWZ7 1642 aa28.07■■■□□ 2.08
LINC00398-201ENST00000414407 GRIN2BQ13224 1484 aa28.07■■■□□ 2.08
LINC00398-201ENST00000414407 TRIM41Q8WV44 630 aa28.01■■■□□ 2.07
LINC00398-201ENST00000414407 MAGI1Q96QZ7 1491 aaPredicted RBP27.97■■■□□ 2.07
LINC00398-201ENST00000414407 SNAPC4Q5SXM2 1469 aa27.95■■■□□ 2.07
LINC00398-201ENST00000414407 PBRM1Q86U86 1689 aa27.95■■■□□ 2.07
LINC00398-201ENST00000414407 KIF27Q86VH2 1401 aa27.93■■■□□ 2.06
LINC00398-201ENST00000414407 ERICH3Q5RHP9 1530 aa27.91■■■□□ 2.06
LINC00398-201ENST00000414407 OSCARQ8IYS5 282 aa27.87■■■□□ 2.05
LINC00398-201ENST00000414407 DNAJC5Q9H3Z4 198 aa27.86■■■□□ 2.05
LINC00398-201ENST00000414407 SYNJ2O15056 1496 aa27.85■■■□□ 2.05
LINC00398-201ENST00000414407 CHIC1Q5VXU3 224 aa27.82■■■□□ 2.04
LINC00398-201ENST00000414407 CHMP7Q8WUX9 453 aaPredicted RBP27.82■■■□□ 2.04
LINC00398-201ENST00000414407 FBLN2P98095 1184 aa27.81■■■□□ 2.04
LINC00398-201ENST00000414407 FHAD1B1AJZ9 1412 aa27.8■■■□□ 2.04
LINC00398-201ENST00000414407 IGF1RP08069 1367 aa27.79■■■□□ 2.04
LINC00398-201ENST00000414407 CHD1O14646 1710 aa27.78■■■□□ 2.04
LINC00398-201ENST00000414407 ADAMTS12P58397 1594 aa27.77■■■□□ 2.04
LINC00398-201ENST00000414407 GRIN2AQ12879 1464 aa27.69■■■□□ 2.02
LINC00398-201ENST00000414407 CUL7Q14999 1698 aa27.68■■■□□ 2.02
LINC00398-201ENST00000414407 RUSC2Q8N2Y8 1516 aa27.67■■■□□ 2.02
LINC00398-201ENST00000414407 CARMIL1Q5VZK9 1371 aa27.62■■■□□ 2.01
LINC00398-201ENST00000414407 EEA1Q15075 1411 aa27.59■■■□□ 2.01
LINC00398-201ENST00000414407 NUP160Q12769 1436 aa27.58■■■□□ 2
LINC00398-201ENST00000414407 CLASP1Q7Z460 1538 aa27.55■■■□□ 2
LINC00398-201ENST00000414407 CEP170Q5SW79 1584 aa27.51■■□□□ 1.99
LINC00398-201ENST00000414407 CSRNP3Q8WYN3 585 aa27.49■■□□□ 1.99
LINC00398-201ENST00000414407 RAPGEF2Q9Y4G8 1499 aa27.49■■□□□ 1.99
LINC00398-201ENST00000414407 PRXQ9BXM0 1461 aa27.46■■□□□ 1.99
LINC00398-201ENST00000414407 KIAA0586Q9BVV6 1533 aa27.38■■□□□ 1.97
LINC00398-201ENST00000414407 ARHGEF11O15085 1522 aa27.37■■□□□ 1.97
LINC00398-201ENST00000414407 FAM9AQ8IZU1 332 aaPredicted RBP27.35■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms