RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, humanhuman

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-206ENST00000413725 NISCHQ9Y2I1 1504 aa31.38■■■□□ 2.61
SF1-206ENST00000413725 CCDC180Q9P1Z9 1646 aa27.87■■■□□ 2.05
SF1-206ENST00000413725 ABCC9O60706 1549 aa26.85■■□□□ 1.89
SF1-206ENST00000413725 ZCCHC6Q5VYS8 1495 aaKnown RBP26.21■■□□□ 1.79
SF1-206ENST00000413725 NACADO15069 1562 aa26.07■■□□□ 1.76
SF1-206ENST00000413725 DCAF8L2P0C7V8 631 aa26.04■■□□□ 1.76
SF1-206ENST00000413725 RB1CC1Q8TDY2 1594 aa26.03■■□□□ 1.76
SF1-206ENST00000413725 DCAF1Q9Y4B6 1507 aa26■■□□□ 1.75
SF1-206ENST00000413725 MYO15BQ96JP2 1530 aa25.99■■□□□ 1.75
SF1-206ENST00000413725 UNC13AQ9UPW8 1703 aa25.54■■□□□ 1.68
SF1-206ENST00000413725 SCRIBQ14160 1630 aa25.4■■□□□ 1.66
SF1-206ENST00000413725 BICRAQ9NZM4 1560 aa25.18■■□□□ 1.62
SF1-206ENST00000413725 PABPN1Q86U42 306 aaKnown RBP eCLIP25.08■■□□□ 1.61
SF1-206ENST00000413725 SHROOM4Q9ULL8 1493 aa24.99■■□□□ 1.59
SF1-206ENST00000413725 EIF4G1Q04637 1599 aaKnown RBP24.51■■□□□ 1.51
SF1-206ENST00000413725 CECR2Q9BXF3 1484 aa24.36■■□□□ 1.49
SF1-206ENST00000413725 CC2D2AQ9P2K1 1620 aa24.35■■□□□ 1.49
SF1-206ENST00000413725 BAZ1AQ9NRL2 1556 aaPredicted RBP24.33■■□□□ 1.49
SF1-206ENST00000413725 SMARCA4P51532 1647 aa24.32■■□□□ 1.48
SF1-206ENST00000413725 DNAJC5BQ9UF47 199 aa24.25■■□□□ 1.47
SF1-206ENST00000413725 MROH2BQ7Z745 1585 aa24.17■■□□□ 1.46
SF1-206ENST00000413725 SMARCA2P51531 1590 aa24.1■■□□□ 1.45
SF1-206ENST00000413725 PEG3Q9GZU2 1588 aa24.07■■□□□ 1.44
SF1-206ENST00000413725 ATAD2BQ9ULI0 1458 aa24.05■■□□□ 1.44
SF1-206ENST00000413725 RSF1Q96T23 1441 aaPredicted RBP23.99■■□□□ 1.43
SF1-206ENST00000413725 WIZO95785 1651 aa23.99■■□□□ 1.43
SF1-206ENST00000413725 NCAPD3P42695 1498 aa23.98■■□□□ 1.43
SF1-206ENST00000413725 HMGXB3Q12766 1538 aa23.95■■□□□ 1.43
SF1-206ENST00000413725 BAZ1BQ9UIG0 1483 aaKnown RBP23.91■■□□□ 1.42
SF1-206ENST00000413725 TOP2AP11388 1531 aaKnown RBP23.74■■□□□ 1.39
SF1-206ENST00000413725 SUPT5HO00267 1087 aaKnown RBP23.62■■□□□ 1.37
SF1-206ENST00000413725 CCDC88BA6NC98 1476 aa23.41■■□□□ 1.34
SF1-206ENST00000413725 LAMC3Q9Y6N6 1575 aa23.38■■□□□ 1.33
SF1-206ENST00000413725 NESP48681 1621 aa23.31■■□□□ 1.32
SF1-206ENST00000413725 CADPSQ9ULU8 1353 aa23.3■■□□□ 1.32
SF1-206ENST00000413725 PRDM2Q13029 1718 aa23.3■■□□□ 1.32
SF1-206ENST00000413725 AEBP2Q6ZN18 517 aaPredicted RBP23.24■■□□□ 1.31
SF1-206ENST00000413725 CFTRP13569 1480 aa23.24■■□□□ 1.31
SF1-206ENST00000413725 PDS5BQ9NTI5 1447 aa23.16■■□□□ 1.3
SF1-206ENST00000413725 KIF21AQ7Z4S6 1674 aa23.16■■□□□ 1.3
SF1-206ENST00000413725 ERCC6Q03468 1493 aa23.15■■□□□ 1.3
SF1-206ENST00000413725 FANCD2Q9BXW9 1451 aa23.06■■□□□ 1.28
SF1-206ENST00000413725 CEP164Q9UPV0 1460 aa23.03■■□□□ 1.28
SF1-206ENST00000413725 THOC2Q8NI27 1593 aaKnown RBP22.96■■□□□ 1.27
SF1-206ENST00000413725 MRC2Q9UBG0 1479 aa22.92■■□□□ 1.26
SF1-206ENST00000413725 WDR62O43379 1518 aa22.84■■□□□ 1.25
SF1-206ENST00000413725 URB2Q14146 1524 aaKnown RBP22.8■■□□□ 1.24
SF1-206ENST00000413725 ABCC8Q09428 1581 aa22.79■■□□□ 1.24
SF1-206ENST00000413725 CUX2O14529 1486 aa22.79■■□□□ 1.24
SF1-206ENST00000413725 DNMBPQ6XZF7 1577 aa22.77■■□□□ 1.24
SF1-206ENST00000413725 TOPBP1Q92547 1522 aa22.74■■□□□ 1.23
SF1-206ENST00000413725 CUX1P39880 1505 aa22.67■■□□□ 1.22
SF1-206ENST00000413725 WRNQ14191 1432 aaPredicted RBP eCLIP22.65■■□□□ 1.22
SF1-206ENST00000413725 BIVM-ERCC5R4GMW8 1640 aa22.63■■□□□ 1.21
SF1-206ENST00000413725 TOP2BQ02880 1626 aa22.6■■□□□ 1.21
SF1-206ENST00000413725 SYNJ1O43426 1573 aa22.59■■□□□ 1.21
SF1-206ENST00000413725 FGD5Q6ZNL6 1462 aa22.55■■□□□ 1.2
SF1-206ENST00000413725 POLA1P09884 1462 aaPredicted RBP22.54■■□□□ 1.2
SF1-206ENST00000413725 IFT140Q96RY7 1462 aa22.52■■□□□ 1.2
SF1-206ENST00000413725 CHIC1Q5VXU3 224 aa22.5■■□□□ 1.19
SF1-206ENST00000413725 TARBP1Q13395 1621 aaKnown RBP22.48■■□□□ 1.19
SF1-206ENST00000413725 SOGA1O94964 1423 aa22.45■■□□□ 1.18
SF1-206ENST00000413725 WDR97A6NE52 1622 aa22.43■■□□□ 1.18
SF1-206ENST00000413725 RAD54L2Q9Y4B4 1467 aa22.42■■□□□ 1.18
SF1-206ENST00000413725 EIF4G3O43432 1585 aaKnown RBP22.36■■□□□ 1.17
SF1-206ENST00000413725 ABCA10Q8WWZ4 1543 aa22.36■■□□□ 1.17
SF1-206ENST00000413725 ZNF608Q9ULD9 1512 aaPredicted RBP22.35■■□□□ 1.17
SF1-206ENST00000413725 TRIM41Q8WV44 630 aa22.31■■□□□ 1.16
SF1-206ENST00000413725 ABCA5Q8WWZ7 1642 aa22.28■■□□□ 1.16
SF1-206ENST00000413725 PBRM1Q86U86 1689 aa22.26■■□□□ 1.15
SF1-206ENST00000413725 TDRD9Q8NDG6 1382 aaKnown RBP22.26■■□□□ 1.15
SF1-206ENST00000413725 AQRO60306 1485 aaKnown RBP eCLIP22.26■■□□□ 1.151e-7■■■■■ 54.5
SF1-206ENST00000413725 GAPVD1Q14C86 1478 aa22.22■■□□□ 1.15
SF1-206ENST00000413725 GRIN2BQ13224 1484 aa22.17■■□□□ 1.14
SF1-206ENST00000413725 KIF27Q86VH2 1401 aa22.15■■□□□ 1.14
SF1-206ENST00000413725 ERICH3Q5RHP9 1530 aa22.11■■□□□ 1.13
SF1-206ENST00000413725 SNAPC4Q5SXM2 1469 aa22.1■■□□□ 1.13
SF1-206ENST00000413725 MAGI1Q96QZ7 1491 aaPredicted RBP22.1■■□□□ 1.13
SF1-206ENST00000413725 CHD1O14646 1710 aa22.07■■□□□ 1.12
SF1-206ENST00000413725 ADAMTS12P58397 1594 aa22.04■■□□□ 1.12
SF1-206ENST00000413725 CUL7Q14999 1698 aa22.04■■□□□ 1.12
SF1-206ENST00000413725 RUSC2Q8N2Y8 1516 aa22.01■■□□□ 1.11
SF1-206ENST00000413725 SYNJ2O15056 1496 aa22■■□□□ 1.11
SF1-206ENST00000413725 IGF1RP08069 1367 aa21.97■■□□□ 1.11
SF1-206ENST00000413725 FHAD1B1AJZ9 1412 aa21.97■■□□□ 1.11
SF1-206ENST00000413725 EEA1Q15075 1411 aa21.97■■□□□ 1.11
SF1-206ENST00000413725 FBLN2P98095 1184 aa21.94■■□□□ 1.1
SF1-206ENST00000413725 CHMP7Q8WUX9 453 aaPredicted RBP21.93■■□□□ 1.1
SF1-206ENST00000413725 DNAJC5Q9H3Z4 198 aa21.9■■□□□ 1.1
SF1-206ENST00000413725 GRIN2AQ12879 1464 aa21.9■■□□□ 1.1
SF1-206ENST00000413725 CARMIL1Q5VZK9 1371 aa21.87■■□□□ 1.09
SF1-206ENST00000413725 OSCARQ8IYS5 282 aa21.85■■□□□ 1.09
SF1-206ENST00000413725 CSRNP3Q8WYN3 585 aa21.83■■□□□ 1.09
SF1-206ENST00000413725 FAM9AQ8IZU1 332 aaPredicted RBP21.81■■□□□ 1.08
SF1-206ENST00000413725 RAPGEF2Q9Y4G8 1499 aa21.81■■□□□ 1.08
SF1-206ENST00000413725 CEP170Q5SW79 1584 aa21.78■■□□□ 1.08
SF1-206ENST00000413725 PRXQ9BXM0 1461 aa21.78■■□□□ 1.08
SF1-206ENST00000413725 NUP160Q12769 1436 aa21.76■■□□□ 1.07
SF1-206ENST00000413725 KIF21BO75037 1637 aa21.75■■□□□ 1.07
SF1-206ENST00000413725 CLASP1Q7Z460 1538 aa21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms