RNA–Protein interactions for RNA: ENST00000412342.5

HDAC8-210, Transcript of histone deacetylase 8, humanhuman

TSL 1 (best)

Gene HDAC8, Length 679 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC8-210ENST00000412342 NISCHQ9Y2I1 1504 aa32.15■■■□□ 2.74
HDAC8-210ENST00000412342 CCDC180Q9P1Z9 1646 aa28.59■■■□□ 2.17
HDAC8-210ENST00000412342 ABCC9O60706 1549 aa27.8■■■□□ 2.04
HDAC8-210ENST00000412342 ZCCHC6Q5VYS8 1495 aaKnown RBP26.82■■□□□ 1.88
HDAC8-210ENST00000412342 NACADO15069 1562 aa26.81■■□□□ 1.88
HDAC8-210ENST00000412342 RB1CC1Q8TDY2 1594 aa26.8■■□□□ 1.88
HDAC8-210ENST00000412342 MYO15BQ96JP2 1530 aa26.71■■□□□ 1.87
HDAC8-210ENST00000412342 DCAF1Q9Y4B6 1507 aa26.63■■□□□ 1.85
HDAC8-210ENST00000412342 DCAF8L2P0C7V8 631 aa26.61■■□□□ 1.85
HDAC8-210ENST00000412342 UNC13AQ9UPW8 1703 aa26.31■■□□□ 1.8
HDAC8-210ENST00000412342 BICRAQ9NZM4 1560 aa26.07■■□□□ 1.76
HDAC8-210ENST00000412342 SCRIBQ14160 1630 aa26.03■■□□□ 1.76
HDAC8-210ENST00000412342 PABPN1Q86U42 306 aaKnown RBP eCLIP25.93■■□□□ 1.74
HDAC8-210ENST00000412342 SHROOM4Q9ULL8 1493 aa25.76■■□□□ 1.71
HDAC8-210ENST00000412342 DNAJC5BQ9UF47 199 aa25.45■■□□□ 1.66
HDAC8-210ENST00000412342 EIF4G1Q04637 1599 aaKnown RBP25.33■■□□□ 1.65
HDAC8-210ENST00000412342 CC2D2AQ9P2K1 1620 aa25.2■■□□□ 1.62
HDAC8-210ENST00000412342 CECR2Q9BXF3 1484 aa25.03■■□□□ 1.6
HDAC8-210ENST00000412342 SMARCA4P51532 1647 aa24.95■■□□□ 1.58
HDAC8-210ENST00000412342 BAZ1AQ9NRL2 1556 aaPredicted RBP24.89■■□□□ 1.58
HDAC8-210ENST00000412342 MROH2BQ7Z745 1585 aa24.78■■□□□ 1.56
HDAC8-210ENST00000412342 ATAD2BQ9ULI0 1458 aa24.76■■□□□ 1.55
HDAC8-210ENST00000412342 PEG3Q9GZU2 1588 aa24.73■■□□□ 1.55
HDAC8-210ENST00000412342 NCAPD3P42695 1498 aa24.73■■□□□ 1.55
HDAC8-210ENST00000412342 SMARCA2P51531 1590 aa24.71■■□□□ 1.55
HDAC8-210ENST00000412342 HMGXB3Q12766 1538 aa24.65■■□□□ 1.54
HDAC8-210ENST00000412342 WIZO95785 1651 aa24.53■■□□□ 1.52
HDAC8-210ENST00000412342 BAZ1BQ9UIG0 1483 aaKnown RBP24.52■■□□□ 1.52
HDAC8-210ENST00000412342 RSF1Q96T23 1441 aaPredicted RBP24.51■■□□□ 1.51
HDAC8-210ENST00000412342 TOP2AP11388 1531 aaKnown RBP24.26■■□□□ 1.47
HDAC8-210ENST00000412342 NESP48681 1621 aa24.11■■□□□ 1.45
HDAC8-210ENST00000412342 LAMC3Q9Y6N6 1575 aa24.08■■□□□ 1.44
HDAC8-210ENST00000412342 CADPSQ9ULU8 1353 aa23.98■■□□□ 1.43
HDAC8-210ENST00000412342 CCDC88BA6NC98 1476 aa23.95■■□□□ 1.42
HDAC8-210ENST00000412342 ERCC6Q03468 1493 aa23.9■■□□□ 1.42
HDAC8-210ENST00000412342 CFTRP13569 1480 aa23.89■■□□□ 1.42
HDAC8-210ENST00000412342 KIF21AQ7Z4S6 1674 aa23.88■■□□□ 1.41
HDAC8-210ENST00000412342 PDS5BQ9NTI5 1447 aa23.84■■□□□ 1.41
HDAC8-210ENST00000412342 SUPT5HO00267 1087 aaKnown RBP23.8■■□□□ 1.4
HDAC8-210ENST00000412342 PRDM2Q13029 1718 aa23.79■■□□□ 1.4
HDAC8-210ENST00000412342 THOC2Q8NI27 1593 aaKnown RBP23.79■■□□□ 1.4
HDAC8-210ENST00000412342 FANCD2Q9BXW9 1451 aa23.71■■□□□ 1.39
HDAC8-210ENST00000412342 CUX2O14529 1486 aa23.68■■□□□ 1.38
HDAC8-210ENST00000412342 CEP164Q9UPV0 1460 aa23.67■■□□□ 1.38
HDAC8-210ENST00000412342 MRC2Q9UBG0 1479 aa23.63■■□□□ 1.37
HDAC8-210ENST00000412342 WDR62O43379 1518 aa23.6■■□□□ 1.37
HDAC8-210ENST00000412342 URB2Q14146 1524 aaKnown RBP23.51■■□□□ 1.35
HDAC8-210ENST00000412342 TOPBP1Q92547 1522 aa23.37■■□□□ 1.33
HDAC8-210ENST00000412342 DNMBPQ6XZF7 1577 aa23.36■■□□□ 1.33
HDAC8-210ENST00000412342 ABCC8Q09428 1581 aa23.33■■□□□ 1.33
HDAC8-210ENST00000412342 CUX1P39880 1505 aa23.24■■□□□ 1.31
HDAC8-210ENST00000412342 POLA1P09884 1462 aaPredicted RBP23.18■■□□□ 1.3
HDAC8-210ENST00000412342 IFT140Q96RY7 1462 aa23.17■■□□□ 1.3
HDAC8-210ENST00000412342 TARBP1Q13395 1621 aaKnown RBP23.15■■□□□ 1.3
HDAC8-210ENST00000412342 FGD5Q6ZNL6 1462 aa23.13■■□□□ 1.29
HDAC8-210ENST00000412342 BIVM-ERCC5R4GMW8 1640 aa23.1■■□□□ 1.29
HDAC8-210ENST00000412342 ZNF608Q9ULD9 1512 aaPredicted RBP23.09■■□□□ 1.29
HDAC8-210ENST00000412342 SYNJ1O43426 1573 aa23.09■■□□□ 1.29
HDAC8-210ENST00000412342 TOP2BQ02880 1626 aa23.07■■□□□ 1.28
HDAC8-210ENST00000412342 WRNQ14191 1432 aaPredicted RBP eCLIP23.07■■□□□ 1.28
HDAC8-210ENST00000412342 RAD54L2Q9Y4B4 1467 aa23.06■■□□□ 1.28
HDAC8-210ENST00000412342 EIF4G3O43432 1585 aaKnown RBP23.04■■□□□ 1.28
HDAC8-210ENST00000412342 WDR97A6NE52 1622 aa23.03■■□□□ 1.28
HDAC8-210ENST00000412342 SOGA1O94964 1423 aa23.02■■□□□ 1.28
HDAC8-210ENST00000412342 AQRO60306 1485 aaKnown RBP eCLIP22.93■■□□□ 1.26
HDAC8-210ENST00000412342 ABCA10Q8WWZ4 1543 aa22.92■■□□□ 1.26
HDAC8-210ENST00000412342 TDRD9Q8NDG6 1382 aaKnown RBP22.89■■□□□ 1.25
HDAC8-210ENST00000412342 ABCA5Q8WWZ7 1642 aa22.87■■□□□ 1.25
HDAC8-210ENST00000412342 DNAJC5Q9H3Z4 198 aa22.81■■□□□ 1.24
HDAC8-210ENST00000412342 PBRM1Q86U86 1689 aa22.81■■□□□ 1.24
HDAC8-210ENST00000412342 GAPVD1Q14C86 1478 aa22.79■■□□□ 1.24
HDAC8-210ENST00000412342 GRIN2BQ13224 1484 aa22.77■■□□□ 1.24
HDAC8-210ENST00000412342 SNAPC4Q5SXM2 1469 aa22.74■■□□□ 1.23
HDAC8-210ENST00000412342 CHD1O14646 1710 aa22.74■■□□□ 1.23
HDAC8-210ENST00000412342 MAGI1Q96QZ7 1491 aaPredicted RBP22.72■■□□□ 1.23
HDAC8-210ENST00000412342 ERICH3Q5RHP9 1530 aa22.64■■□□□ 1.21
HDAC8-210ENST00000412342 ADAMTS12P58397 1594 aa22.63■■□□□ 1.21
HDAC8-210ENST00000412342 SYNJ2O15056 1496 aa22.62■■□□□ 1.21
HDAC8-210ENST00000412342 OSCARQ8IYS5 282 aa22.62■■□□□ 1.21
HDAC8-210ENST00000412342 KIF27Q86VH2 1401 aa22.56■■□□□ 1.2
HDAC8-210ENST00000412342 FHAD1B1AJZ9 1412 aa22.52■■□□□ 1.2
HDAC8-210ENST00000412342 FBLN2P98095 1184 aa22.52■■□□□ 1.2
HDAC8-210ENST00000412342 GRIN2AQ12879 1464 aa22.5■■□□□ 1.19
HDAC8-210ENST00000412342 CHMP7Q8WUX9 453 aaPredicted RBP22.5■■□□□ 1.19
HDAC8-210ENST00000412342 CLASP1Q7Z460 1538 aa22.5■■□□□ 1.19
HDAC8-210ENST00000412342 TRIM41Q8WV44 630 aa22.48■■□□□ 1.19
HDAC8-210ENST00000412342 IGF1RP08069 1367 aa22.48■■□□□ 1.19
HDAC8-210ENST00000412342 CUL7Q14999 1698 aa22.46■■□□□ 1.19
HDAC8-210ENST00000412342 RUSC2Q8N2Y8 1516 aa22.45■■□□□ 1.18
HDAC8-210ENST00000412342 CEP170Q5SW79 1584 aa22.42■■□□□ 1.18
HDAC8-210ENST00000412342 NUP160Q12769 1436 aa22.42■■□□□ 1.18
HDAC8-210ENST00000412342 RIMBP3CA6NJZ7 1639 aa22.38■■□□□ 1.17
HDAC8-210ENST00000412342 RIMBP3BA6NNM3 1639 aa22.38■■□□□ 1.17
HDAC8-210ENST00000412342 RIMBP3Q9UFD9 1639 aa22.38■■□□□ 1.17
HDAC8-210ENST00000412342 ARHGEF11O15085 1522 aa22.36■■□□□ 1.17
HDAC8-210ENST00000412342 CHIC1Q5VXU3 224 aa22.33■■□□□ 1.17
HDAC8-210ENST00000412342 CARMIL1Q5VZK9 1371 aa22.32■■□□□ 1.16
HDAC8-210ENST00000412342 SHROOM2Q13796 1616 aa22.28■■□□□ 1.16
HDAC8-210ENST00000412342 PRXQ9BXM0 1461 aa22.22■■□□□ 1.15
HDAC8-210ENST00000412342 RAPGEF2Q9Y4G8 1499 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms