RNA–Protein interactions for RNA: ENST00000410044.5

LSM5-207, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3 BASIC

Gene LSM5, Length 687 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-207ENST00000410044 NISCHQ9Y2I1 1504 aa36.1■■■■□ 3.37
LSM5-207ENST00000410044 CCDC180Q9P1Z9 1646 aa31.87■■■□□ 2.69
LSM5-207ENST00000410044 ABCC9O60706 1549 aa30.63■■■□□ 2.49
LSM5-207ENST00000410044 ZCCHC6Q5VYS8 1495 aaKnown RBP30.17■■■□□ 2.42
LSM5-207ENST00000410044 DCAF1Q9Y4B6 1507 aa29.95■■■□□ 2.38
LSM5-207ENST00000410044 MYO15BQ96JP2 1530 aa29.91■■■□□ 2.38
LSM5-207ENST00000410044 DCAF8L2P0C7V8 631 aa29.87■■■□□ 2.37
LSM5-207ENST00000410044 NACADO15069 1562 aa29.86■■■□□ 2.37
LSM5-207ENST00000410044 RB1CC1Q8TDY2 1594 aa29.73■■■□□ 2.35
LSM5-207ENST00000410044 UNC13AQ9UPW8 1703 aa29.08■■■□□ 2.25
LSM5-207ENST00000410044 SCRIBQ14160 1630 aa29.02■■■□□ 2.24
LSM5-207ENST00000410044 BICRAQ9NZM4 1560 aa28.84■■■□□ 2.21
LSM5-207ENST00000410044 PABPN1Q86U42 306 aaKnown RBP eCLIP28.72■■■□□ 2.19
LSM5-207ENST00000410044 SHROOM4Q9ULL8 1493 aa28.7■■■□□ 2.18
LSM5-207ENST00000410044 CECR2Q9BXF3 1484 aa28.04■■■□□ 2.08
LSM5-207ENST00000410044 EIF4G1Q04637 1599 aaKnown RBP28■■■□□ 2.07
LSM5-207ENST00000410044 BAZ1AQ9NRL2 1556 aaPredicted RBP27.94■■■□□ 2.06
LSM5-207ENST00000410044 SMARCA4P51532 1647 aa27.88■■■□□ 2.05
LSM5-207ENST00000410044 MROH2BQ7Z745 1585 aa27.81■■■□□ 2.04
LSM5-207ENST00000410044 CC2D2AQ9P2K1 1620 aa27.76■■■□□ 2.03
LSM5-207ENST00000410044 DNAJC5BQ9UF47 199 aa27.73■■■□□ 2.03
LSM5-207ENST00000410044 RSF1Q96T23 1441 aaPredicted RBP27.7■■■□□ 2.03
LSM5-207ENST00000410044 PEG3Q9GZU2 1588 aa27.66■■■□□ 2.02
LSM5-207ENST00000410044 ATAD2BQ9ULI0 1458 aa27.63■■■□□ 2.01
LSM5-207ENST00000410044 SMARCA2P51531 1590 aa27.6■■■□□ 2.01
LSM5-207ENST00000410044 NCAPD3P42695 1498 aa27.57■■■□□ 2
LSM5-207ENST00000410044 WIZO95785 1651 aa27.52■■■□□ 2
LSM5-207ENST00000410044 HMGXB3Q12766 1538 aa27.44■■□□□ 1.98
LSM5-207ENST00000410044 BAZ1BQ9UIG0 1483 aaKnown RBP27.38■■□□□ 1.97
LSM5-207ENST00000410044 SUPT5HO00267 1087 aaKnown RBP27.3■■□□□ 1.96
LSM5-207ENST00000410044 TOP2AP11388 1531 aaKnown RBP27.26■■□□□ 1.96
LSM5-207ENST00000410044 CCDC88BA6NC98 1476 aa26.97■■□□□ 1.91
LSM5-207ENST00000410044 CADPSQ9ULU8 1353 aa26.77■■□□□ 1.88
LSM5-207ENST00000410044 LAMC3Q9Y6N6 1575 aa26.73■■□□□ 1.87
LSM5-207ENST00000410044 CFTRP13569 1480 aa26.72■■□□□ 1.87
LSM5-207ENST00000410044 NESP48681 1621 aa26.66■■□□□ 1.86
LSM5-207ENST00000410044 PRDM2Q13029 1718 aa26.53■■□□□ 1.84
LSM5-207ENST00000410044 PDS5BQ9NTI5 1447 aa26.52■■□□□ 1.84
LSM5-207ENST00000410044 FANCD2Q9BXW9 1451 aa26.42■■□□□ 1.82
LSM5-207ENST00000410044 KIF21AQ7Z4S6 1674 aa26.36■■□□□ 1.81
LSM5-207ENST00000410044 ERCC6Q03468 1493 aa26.33■■□□□ 1.81
LSM5-207ENST00000410044 CEP164Q9UPV0 1460 aa26.32■■□□□ 1.8
LSM5-207ENST00000410044 MRC2Q9UBG0 1479 aa26.19■■□□□ 1.78
LSM5-207ENST00000410044 THOC2Q8NI27 1593 aaKnown RBP26.16■■□□□ 1.78
LSM5-207ENST00000410044 ABCC8Q09428 1581 aa26.15■■□□□ 1.78
LSM5-207ENST00000410044 URB2Q14146 1524 aaKnown RBP26.13■■□□□ 1.77
LSM5-207ENST00000410044 WDR62O43379 1518 aa26.1■■□□□ 1.77
LSM5-207ENST00000410044 DNMBPQ6XZF7 1577 aa26.07■■□□□ 1.76
LSM5-207ENST00000410044 WRNQ14191 1432 aaPredicted RBP eCLIP26.07■■□□□ 1.76
LSM5-207ENST00000410044 TOPBP1Q92547 1522 aa26.07■■□□□ 1.76
LSM5-207ENST00000410044 CUX1P39880 1505 aa26.05■■□□□ 1.76
LSM5-207ENST00000410044 TOP2BQ02880 1626 aa25.98■■□□□ 1.75
LSM5-207ENST00000410044 BIVM-ERCC5R4GMW8 1640 aa25.97■■□□□ 1.75
LSM5-207ENST00000410044 SYNJ1O43426 1573 aa25.96■■□□□ 1.75
LSM5-207ENST00000410044 CUX2O14529 1486 aa25.95■■□□□ 1.74
LSM5-207ENST00000410044 FGD5Q6ZNL6 1462 aa25.87■■□□□ 1.73
LSM5-207ENST00000410044 CHIC1Q5VXU3 224 aa25.87■■□□□ 1.73
LSM5-207ENST00000410044 POLA1P09884 1462 aaPredicted RBP25.86■■□□□ 1.73
LSM5-207ENST00000410044 TRIM41Q8WV44 630 aa25.81■■□□□ 1.72
LSM5-207ENST00000410044 SOGA1O94964 1423 aa25.8■■□□□ 1.72
LSM5-207ENST00000410044 IFT140Q96RY7 1462 aa25.79■■□□□ 1.72
LSM5-207ENST00000410044 TARBP1Q13395 1621 aaKnown RBP25.75■■□□□ 1.71
LSM5-207ENST00000410044 RAD54L2Q9Y4B4 1467 aa25.74■■□□□ 1.71
LSM5-207ENST00000410044 ABCA10Q8WWZ4 1543 aa25.68■■□□□ 1.7
LSM5-207ENST00000410044 WDR97A6NE52 1622 aa25.65■■□□□ 1.7
LSM5-207ENST00000410044 ZNF608Q9ULD9 1512 aaPredicted RBP25.59■■□□□ 1.69
LSM5-207ENST00000410044 TDRD9Q8NDG6 1382 aaKnown RBP25.56■■□□□ 1.68
LSM5-207ENST00000410044 AQRO60306 1485 aaKnown RBP eCLIP25.53■■□□□ 1.688e-7■■■□□ 16.1
LSM5-207ENST00000410044 ABCA5Q8WWZ7 1642 aa25.51■■□□□ 1.67
LSM5-207ENST00000410044 KIF27Q86VH2 1401 aa25.5■■□□□ 1.67
LSM5-207ENST00000410044 EIF4G3O43432 1585 aaKnown RBP25.49■■□□□ 1.67
LSM5-207ENST00000410044 GAPVD1Q14C86 1478 aa25.49■■□□□ 1.67
LSM5-207ENST00000410044 GRIN2BQ13224 1484 aa25.42■■□□□ 1.66
LSM5-207ENST00000410044 RUSC2Q8N2Y8 1516 aa25.42■■□□□ 1.66
LSM5-207ENST00000410044 ERICH3Q5RHP9 1530 aa25.39■■□□□ 1.66
LSM5-207ENST00000410044 EEA1Q15075 1411 aa25.38■■□□□ 1.65
LSM5-207ENST00000410044 IGF1RP08069 1367 aa25.38■■□□□ 1.65
LSM5-207ENST00000410044 PBRM1Q86U86 1689 aa25.38■■□□□ 1.65
LSM5-207ENST00000410044 MAGI1Q96QZ7 1491 aaPredicted RBP25.31■■□□□ 1.64
LSM5-207ENST00000410044 CSRNP3Q8WYN3 585 aa25.28■■□□□ 1.64
LSM5-207ENST00000410044 SNAPC4Q5SXM2 1469 aa25.28■■□□□ 1.64
LSM5-207ENST00000410044 CUL7Q14999 1698 aa25.23■■□□□ 1.63
LSM5-207ENST00000410044 FHAD1B1AJZ9 1412 aa25.23■■□□□ 1.63
LSM5-207ENST00000410044 CARMIL1Q5VZK9 1371 aa25.21■■□□□ 1.63
LSM5-207ENST00000410044 ADAMTS12P58397 1594 aa25.21■■□□□ 1.63
LSM5-207ENST00000410044 SYNJ2O15056 1496 aa25.2■■□□□ 1.62
LSM5-207ENST00000410044 FAM9AQ8IZU1 332 aaPredicted RBP25.19■■□□□ 1.62
LSM5-207ENST00000410044 PRXQ9BXM0 1461 aa25.17■■□□□ 1.62
LSM5-207ENST00000410044 CHMP7Q8WUX9 453 aaPredicted RBP25.14■■□□□ 1.62
LSM5-207ENST00000410044 RAPGEF2Q9Y4G8 1499 aa25.11■■□□□ 1.61
LSM5-207ENST00000410044 CHD1O14646 1710 aa25.09■■□□□ 1.61
LSM5-207ENST00000410044 GRIN2AQ12879 1464 aa25.09■■□□□ 1.61
LSM5-207ENST00000410044 FBLN2P98095 1184 aa25.07■■□□□ 1.6
LSM5-207ENST00000410044 KIF21BO75037 1637 aa25.05■■□□□ 1.6
LSM5-207ENST00000410044 OSCARQ8IYS5 282 aa25■■□□□ 1.59
LSM5-207ENST00000410044 NUP160Q12769 1436 aa24.99■■□□□ 1.59
LSM5-207ENST00000410044 CEP170Q5SW79 1584 aa24.93■■□□□ 1.58
LSM5-207ENST00000410044 GOLGA3Q08378 1498 aa24.92■■□□□ 1.58
LSM5-207ENST00000410044 KIAA0586Q9BVV6 1533 aa24.88■■□□□ 1.57
LSM5-207ENST00000410044 CLASP1Q7Z460 1538 aa24.86■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 247.2 ms