RNA–Protein interactions for RNA: ENST00000409455.5

LIMS2-205, Transcript of LIM zinc finger domain containing 2, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS2, Length 2,500 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-205ENST00000409455 NISCHQ9Y2I1 1504 aa32.43■■■□□ 2.78
LIMS2-205ENST00000409455 CCDC180Q9P1Z9 1646 aa28.05■■■□□ 2.08
LIMS2-205ENST00000409455 ZCCHC6Q5VYS8 1495 aaKnown RBP27.24■■□□□ 1.95
LIMS2-205ENST00000409455 DCAF8L2P0C7V8 631 aa27■■□□□ 1.91
LIMS2-205ENST00000409455 SHROOM4Q9ULL8 1493 aa26.77■■□□□ 1.88
LIMS2-205ENST00000409455 DCAF1Q9Y4B6 1507 aa26.72■■□□□ 1.87
LIMS2-205ENST00000409455 ABCC9O60706 1549 aa26.64■■□□□ 1.86
LIMS2-205ENST00000409455 MYO15BQ96JP2 1530 aa26.33■■□□□ 1.81
LIMS2-205ENST00000409455 NACADO15069 1562 aa26.17■■□□□ 1.78
LIMS2-205ENST00000409455 SCRIBQ14160 1630 aa25.98■■□□□ 1.75
LIMS2-205ENST00000409455 RB1CC1Q8TDY2 1594 aa25.91■■□□□ 1.74
LIMS2-205ENST00000409455 SUPT5HO00267 1087 aaKnown RBP25.85■■□□□ 1.73
LIMS2-205ENST00000409455 HRCP23327 699 aa25.85■■□□□ 1.73
LIMS2-205ENST00000409455 UNC13AQ9UPW8 1703 aa25.38■■□□□ 1.65
LIMS2-205ENST00000409455 PCGF6Q9BYE7 350 aa25.36■■□□□ 1.65
LIMS2-205ENST00000409455 CHIC1Q5VXU3 224 aa25.35■■□□□ 1.65
LIMS2-205ENST00000409455 CECR2Q9BXF3 1484 aa25.29■■□□□ 1.64
LIMS2-205ENST00000409455 RSF1Q96T23 1441 aaPredicted RBP25.28■■□□□ 1.64
LIMS2-205ENST00000409455 PABPN1Q86U42 306 aaKnown RBP eCLIP25.26■■□□□ 1.63
LIMS2-205ENST00000409455 BICRAQ9NZM4 1560 aa25.18■■□□□ 1.62
LIMS2-205ENST00000409455 PPARGC1BQ86YN6 1023 aaKnown RBP25.16■■□□□ 1.62
LIMS2-205ENST00000409455 MROH2BQ7Z745 1585 aa25.11■■□□□ 1.61
LIMS2-205ENST00000409455 BAZ1AQ9NRL2 1556 aaPredicted RBP24.99■■□□□ 1.59
LIMS2-205ENST00000409455 WIZO95785 1651 aa24.89■■□□□ 1.57
LIMS2-205ENST00000409455 SMARCA4P51532 1647 aa24.86■■□□□ 1.57
LIMS2-205ENST00000409455 PELP1Q8IZL8 1130 aaKnown RBP24.75■■□□□ 1.55
LIMS2-205ENST00000409455 TRIM26Q12899 539 aaPredicted RBP24.7■■□□□ 1.54
LIMS2-205ENST00000409455 LOC105371045A0A1W2PR82 267 aa24.65■■□□□ 1.54
LIMS2-205ENST00000409455 TOP2AP11388 1531 aaKnown RBP24.57■■□□□ 1.52
LIMS2-205ENST00000409455 ZEB1P37275 1124 aaPredicted RBP24.52■■□□□ 1.52
LIMS2-205ENST00000409455 PEG3Q9GZU2 1588 aa24.51■■□□□ 1.51
LIMS2-205ENST00000409455 ATAD2BQ9ULI0 1458 aa24.48■■□□□ 1.51
LIMS2-205ENST00000409455 CCDC88BA6NC98 1476 aa24.42■■□□□ 1.5
LIMS2-205ENST00000409455 EIF4G1Q04637 1599 aaKnown RBP24.42■■□□□ 1.5
LIMS2-205ENST00000409455 SMARCA2P51531 1590 aa24.39■■□□□ 1.49
LIMS2-205ENST00000409455 BAZ1BQ9UIG0 1483 aaKnown RBP24.33■■□□□ 1.49
LIMS2-205ENST00000409455 SCAF1Q9H7N4 1312 aaKnown RBP24.26■■□□□ 1.47
LIMS2-205ENST00000409455 TRIM41Q8WV44 630 aa24.24■■□□□ 1.47
LIMS2-205ENST00000409455 NCAPD3P42695 1498 aa24.22■■□□□ 1.47
LIMS2-205ENST00000409455 HMGXB3Q12766 1538 aa24.12■■□□□ 1.45
LIMS2-205ENST00000409455 CC2D2AQ9P2K1 1620 aa24.03■■□□□ 1.44
LIMS2-205ENST00000409455 ABCC8Q09428 1581 aa23.97■■□□□ 1.43
LIMS2-205ENST00000409455 FAM9AQ8IZU1 332 aaPredicted RBP23.89■■□□□ 1.41
LIMS2-205ENST00000409455 ACIN1Q9UKV3 1341 aaKnown RBP23.8■■□□□ 1.4
LIMS2-205ENST00000409455 WRNQ14191 1432 aaPredicted RBP eCLIP23.77■■□□□ 1.4
LIMS2-205ENST00000409455 MYT1Q01538 1121 aa23.77■■□□□ 1.4
LIMS2-205ENST00000409455 CFTRP13569 1480 aa23.74■■□□□ 1.39
LIMS2-205ENST00000409455 NEUROD1Q13562 356 aa23.68■■□□□ 1.38
LIMS2-205ENST00000409455 CADPSQ9ULU8 1353 aa23.66■■□□□ 1.38
LIMS2-205ENST00000409455 SYNJ1O43426 1573 aa23.64■■□□□ 1.37
LIMS2-205ENST00000409455 CENPBP07199 599 aaPredicted RBP23.62■■□□□ 1.37
LIMS2-205ENST00000409455 EHMT2Q96KQ7 1210 aa23.62■■□□□ 1.37
LIMS2-205ENST00000409455 DNAJC5BQ9UF47 199 aa23.62■■□□□ 1.37
LIMS2-205ENST00000409455 SOGA1O94964 1423 aa23.6■■□□□ 1.37
LIMS2-205ENST00000409455 CCER1Q8TC90 406 aaPredicted RBP23.6■■□□□ 1.37
LIMS2-205ENST00000409455 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.57■■□□□ 1.36
LIMS2-205ENST00000409455 GTF3C3Q9Y5Q9 886 aa23.56■■□□□ 1.36
LIMS2-205ENST00000409455 DIEXFQ68CQ4 756 aaKnown RBP23.52■■□□□ 1.36
LIMS2-205ENST00000409455 RUSC2Q8N2Y8 1516 aa23.51■■□□□ 1.35
LIMS2-205ENST00000409455 TOP2BQ02880 1626 aa23.49■■□□□ 1.35
LIMS2-205ENST00000409455 CSRNP3Q8WYN3 585 aa23.44■■□□□ 1.34
LIMS2-205ENST00000409455 CUX1P39880 1505 aa23.44■■□□□ 1.34
LIMS2-205ENST00000409455 NESP48681 1621 aa23.44■■□□□ 1.34
LIMS2-205ENST00000409455 PRDM2Q13029 1718 aa23.43■■□□□ 1.34
LIMS2-205ENST00000409455 EEA1Q15075 1411 aa23.43■■□□□ 1.34
LIMS2-205ENST00000409455 BIVM-ERCC5R4GMW8 1640 aa23.41■■□□□ 1.34
LIMS2-205ENST00000409455 FANCD2Q9BXW9 1451 aa23.38■■□□□ 1.33
LIMS2-205ENST00000409455 LAMC3Q9Y6N6 1575 aa23.31■■□□□ 1.32
LIMS2-205ENST00000409455 UBTFP17480 764 aaKnown RBP23.2■■□□□ 1.3
LIMS2-205ENST00000409455 PDS5BQ9NTI5 1447 aa23.2■■□□□ 1.3
LIMS2-205ENST00000409455 CEP164Q9UPV0 1460 aa23.18■■□□□ 1.3
LIMS2-205ENST00000409455 FGD5Q6ZNL6 1462 aa23.17■■□□□ 1.3
LIMS2-205ENST00000409455 GOLGA3Q08378 1498 aa23.16■■□□□ 1.3
LIMS2-205ENST00000409455 TNIKQ9UKE5 1360 aa23.15■■□□□ 1.3
LIMS2-205ENST00000409455 KIF27Q86VH2 1401 aa23.15■■□□□ 1.3
LIMS2-205ENST00000409455 ZNF316A6NFI3 1004 aaPredicted RBP23.14■■□□□ 1.29
LIMS2-205ENST00000409455 TOPBP1Q92547 1522 aa23.12■■□□□ 1.29
LIMS2-205ENST00000409455 DNMBPQ6XZF7 1577 aa23.12■■□□□ 1.29
LIMS2-205ENST00000409455 KIF21BO75037 1637 aa23.09■■□□□ 1.29
LIMS2-205ENST00000409455 CUX2O14529 1486 aa23.08■■□□□ 1.28
LIMS2-205ENST00000409455 RAPGEF2Q9Y4G8 1499 aa23.08■■□□□ 1.28
LIMS2-205ENST00000409455 URB2Q14146 1524 aaKnown RBP23.08■■□□□ 1.28
LIMS2-205ENST00000409455 CEP162Q5TB80 1403 aa23.06■■□□□ 1.28
LIMS2-205ENST00000409455 TTBK1Q5TCY1 1321 aaPredicted RBP23.05■■□□□ 1.28
LIMS2-205ENST00000409455 POLA1P09884 1462 aaPredicted RBP23.04■■□□□ 1.28
LIMS2-205ENST00000409455 KIF21AQ7Z4S6 1674 aa23.03■■□□□ 1.28
LIMS2-205ENST00000409455 YTHDC1Q96MU7 727 aaKnown RBP23.03■■□□□ 1.28
LIMS2-205ENST00000409455 RAD54L2Q9Y4B4 1467 aa23.03■■□□□ 1.28
LIMS2-205ENST00000409455 PRXQ9BXM0 1461 aa23.02■■□□□ 1.28
LIMS2-205ENST00000409455 IGF1RP08069 1367 aa22.99■■□□□ 1.27
LIMS2-205ENST00000409455 ABCA10Q8WWZ4 1543 aa22.93■■□□□ 1.26
LIMS2-205ENST00000409455 ERICH3Q5RHP9 1530 aa22.92■■□□□ 1.26
LIMS2-205ENST00000409455 RANGAP1P46060 587 aaPredicted RBP22.88■■□□□ 1.25
LIMS2-205ENST00000409455 MIER1Q8N108 512 aa22.88■■□□□ 1.25
LIMS2-205ENST00000409455 CARMIL1Q5VZK9 1371 aa22.86■■□□□ 1.25
LIMS2-205ENST00000409455 MRC2Q9UBG0 1479 aa22.86■■□□□ 1.25
LIMS2-205ENST00000409455 CLIP1P30622 1438 aa22.85■■□□□ 1.25
LIMS2-205ENST00000409455 TDRD9Q8NDG6 1382 aaKnown RBP22.83■■□□□ 1.25
LIMS2-205ENST00000409455 ERCC6Q03468 1493 aa22.78■■□□□ 1.24
LIMS2-205ENST00000409455 WDR97A6NE52 1622 aa22.75■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 106.5 ms