RNA–Protein interactions for RNA: ENST00000406516.5

LIMK2-204, Transcript of LIM domain kinase 2, humanhuman

TSL 5 BASIC

Gene LIMK2, Length 2,657 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK2-204ENST00000406516 NISCHQ9Y2I1 1504 aa33.53■■■□□ 2.96
LIMK2-204ENST00000406516 CCDC180Q9P1Z9 1646 aa29.48■■■□□ 2.31
LIMK2-204ENST00000406516 ABCC9O60706 1549 aa28.68■■■□□ 2.18
LIMK2-204ENST00000406516 DCAF8L2P0C7V8 631 aa28.05■■■□□ 2.08
LIMK2-204ENST00000406516 ZCCHC6Q5VYS8 1495 aaKnown RBP28■■■□□ 2.07
LIMK2-204ENST00000406516 NACADO15069 1562 aa27.69■■■□□ 2.02
LIMK2-204ENST00000406516 DCAF1Q9Y4B6 1507 aa27.68■■■□□ 2.02
LIMK2-204ENST00000406516 MYO15BQ96JP2 1530 aa27.62■■■□□ 2.01
LIMK2-204ENST00000406516 RB1CC1Q8TDY2 1594 aa27.62■■■□□ 2.01
LIMK2-204ENST00000406516 SCRIBQ14160 1630 aa27.09■■□□□ 1.93
LIMK2-204ENST00000406516 UNC13AQ9UPW8 1703 aa27■■□□□ 1.91
LIMK2-204ENST00000406516 PABPN1Q86U42 306 aaKnown RBP eCLIP26.96■■□□□ 1.91
LIMK2-204ENST00000406516 SHROOM4Q9ULL8 1493 aa26.92■■□□□ 1.9
LIMK2-204ENST00000406516 BICRAQ9NZM4 1560 aa26.84■■□□□ 1.89
LIMK2-204ENST00000406516 SUPT5HO00267 1087 aaKnown RBP26.33■■□□□ 1.81
LIMK2-204ENST00000406516 CECR2Q9BXF3 1484 aa26.17■■□□□ 1.78
LIMK2-204ENST00000406516 EIF4G1Q04637 1599 aaKnown RBP26.09■■□□□ 1.77
LIMK2-204ENST00000406516 DNAJC5BQ9UF47 199 aa26.06■■□□□ 1.76
LIMK2-204ENST00000406516 BAZ1AQ9NRL2 1556 aaPredicted RBP25.92■■□□□ 1.74
LIMK2-204ENST00000406516 MROH2BQ7Z745 1585 aa25.9■■□□□ 1.74
LIMK2-204ENST00000406516 SMARCA4P51532 1647 aa25.9■■□□□ 1.74
LIMK2-204ENST00000406516 CC2D2AQ9P2K1 1620 aa25.88■■□□□ 1.73
LIMK2-204ENST00000406516 RSF1Q96T23 1441 aaPredicted RBP25.77■■□□□ 1.72
LIMK2-204ENST00000406516 ATAD2BQ9ULI0 1458 aa25.71■■□□□ 1.71
LIMK2-204ENST00000406516 WIZO95785 1651 aa25.62■■□□□ 1.69
LIMK2-204ENST00000406516 SMARCA2P51531 1590 aa25.62■■□□□ 1.69
LIMK2-204ENST00000406516 NCAPD3P42695 1498 aa25.61■■□□□ 1.69
LIMK2-204ENST00000406516 PEG3Q9GZU2 1588 aa25.6■■□□□ 1.69
LIMK2-204ENST00000406516 CHIC1Q5VXU3 224 aa25.58■■□□□ 1.68
LIMK2-204ENST00000406516 BAZ1BQ9UIG0 1483 aaKnown RBP25.5■■□□□ 1.67
LIMK2-204ENST00000406516 HMGXB3Q12766 1538 aa25.45■■□□□ 1.66
LIMK2-204ENST00000406516 TOP2AP11388 1531 aaKnown RBP25.31■■□□□ 1.64
LIMK2-204ENST00000406516 CCDC88BA6NC98 1476 aa25.1■■□□□ 1.61
LIMK2-204ENST00000406516 NESP48681 1621 aa24.96■■□□□ 1.59
LIMK2-204ENST00000406516 CADPSQ9ULU8 1353 aa24.92■■□□□ 1.58
LIMK2-204ENST00000406516 PCGF6Q9BYE7 350 aa24.86■■□□□ 1.57
LIMK2-204ENST00000406516 LOC105371045A0A1W2PR82 267 aa24.85■■□□□ 1.57
LIMK2-204ENST00000406516 HRCP23327 699 aa24.85■■□□□ 1.57
LIMK2-204ENST00000406516 CFTRP13569 1480 aa24.83■■□□□ 1.57
LIMK2-204ENST00000406516 LAMC3Q9Y6N6 1575 aa24.81■■□□□ 1.56
LIMK2-204ENST00000406516 PDS5BQ9NTI5 1447 aa24.68■■□□□ 1.54
LIMK2-204ENST00000406516 ERCC6Q03468 1493 aa24.63■■□□□ 1.53
LIMK2-204ENST00000406516 FANCD2Q9BXW9 1451 aa24.62■■□□□ 1.53
LIMK2-204ENST00000406516 KIF21AQ7Z4S6 1674 aa24.55■■□□□ 1.52
LIMK2-204ENST00000406516 CEP164Q9UPV0 1460 aa24.52■■□□□ 1.52
LIMK2-204ENST00000406516 PRDM2Q13029 1718 aa24.51■■□□□ 1.51
LIMK2-204ENST00000406516 TRIM41Q8WV44 630 aa24.5■■□□□ 1.51
LIMK2-204ENST00000406516 MRC2Q9UBG0 1479 aa24.39■■□□□ 1.5
LIMK2-204ENST00000406516 PPARGC1BQ86YN6 1023 aaKnown RBP24.38■■□□□ 1.49
LIMK2-204ENST00000406516 URB2Q14146 1524 aaKnown RBP24.36■■□□□ 1.49
LIMK2-204ENST00000406516 THOC2Q8NI27 1593 aaKnown RBP24.36■■□□□ 1.49
LIMK2-204ENST00000406516 TRIM26Q12899 539 aaPredicted RBP24.34■■□□□ 1.49
LIMK2-204ENST00000406516 FAM9AQ8IZU1 332 aaPredicted RBP24.34■■□□□ 1.49
LIMK2-204ENST00000406516 ABCC8Q09428 1581 aa24.32■■□□□ 1.48
LIMK2-204ENST00000406516 WDR62O43379 1518 aa24.27■■□□□ 1.48
LIMK2-204ENST00000406516 TOPBP1Q92547 1522 aa24.26■■□□□ 1.47
LIMK2-204ENST00000406516 WRNQ14191 1432 aaPredicted RBP eCLIP24.25■■□□□ 1.47
LIMK2-204ENST00000406516 CUX1P39880 1505 aa24.25■■□□□ 1.47
LIMK2-204ENST00000406516 DNMBPQ6XZF7 1577 aa24.22■■□□□ 1.47
LIMK2-204ENST00000406516 EHMT2Q96KQ7 1210 aa24.18■■□□□ 1.46
LIMK2-204ENST00000406516 SYNJ1O43426 1573 aa24.17■■□□□ 1.46
LIMK2-204ENST00000406516 CUX2O14529 1486 aa24.14■■□□□ 1.46
LIMK2-204ENST00000406516 POLA1P09884 1462 aaPredicted RBP24.1■■□□□ 1.45
LIMK2-204ENST00000406516 FGD5Q6ZNL6 1462 aa24.1■■□□□ 1.45
LIMK2-204ENST00000406516 TOP2BQ02880 1626 aa24.1■■□□□ 1.45
LIMK2-204ENST00000406516 BIVM-ERCC5R4GMW8 1640 aa24.05■■□□□ 1.44
LIMK2-204ENST00000406516 RAD54L2Q9Y4B4 1467 aa24.05■■□□□ 1.44
LIMK2-204ENST00000406516 SOGA1O94964 1423 aa24.04■■□□□ 1.44
LIMK2-204ENST00000406516 IFT140Q96RY7 1462 aa23.97■■□□□ 1.43
LIMK2-204ENST00000406516 TARBP1Q13395 1621 aaKnown RBP23.94■■□□□ 1.42
LIMK2-204ENST00000406516 ZNF608Q9ULD9 1512 aaPredicted RBP23.93■■□□□ 1.42
LIMK2-204ENST00000406516 TDRD9Q8NDG6 1382 aaKnown RBP23.91■■□□□ 1.42
LIMK2-204ENST00000406516 AQRO60306 1485 aaKnown RBP eCLIP23.86■■□□□ 1.413e-8■■■■■ 62
LIMK2-204ENST00000406516 ABCA10Q8WWZ4 1543 aa23.85■■□□□ 1.41
LIMK2-204ENST00000406516 ZEB1P37275 1124 aaPredicted RBP23.8■■□□□ 1.4
LIMK2-204ENST00000406516 WDR97A6NE52 1622 aa23.78■■□□□ 1.4
LIMK2-204ENST00000406516 EIF4G3O43432 1585 aaKnown RBP23.75■■□□□ 1.39
LIMK2-204ENST00000406516 GAPVD1Q14C86 1478 aa23.74■■□□□ 1.39
LIMK2-204ENST00000406516 RUSC2Q8N2Y8 1516 aa23.72■■□□□ 1.39
LIMK2-204ENST00000406516 KIF27Q86VH2 1401 aa23.7■■□□□ 1.38
LIMK2-204ENST00000406516 ABCA5Q8WWZ7 1642 aa23.69■■□□□ 1.38
LIMK2-204ENST00000406516 GRIN2BQ13224 1484 aa23.65■■□□□ 1.38
LIMK2-204ENST00000406516 IGF1RP08069 1367 aa23.62■■□□□ 1.37
LIMK2-204ENST00000406516 SNAPC4Q5SXM2 1469 aa23.59■■□□□ 1.37
LIMK2-204ENST00000406516 PBRM1Q86U86 1689 aa23.56■■□□□ 1.36
LIMK2-204ENST00000406516 ERICH3Q5RHP9 1530 aa23.55■■□□□ 1.36
LIMK2-204ENST00000406516 FBLN2P98095 1184 aa23.55■■□□□ 1.36
LIMK2-204ENST00000406516 MAGI1Q96QZ7 1491 aaPredicted RBP23.51■■□□□ 1.35
LIMK2-204ENST00000406516 CSRNP3Q8WYN3 585 aa23.51■■□□□ 1.35
LIMK2-204ENST00000406516 CHMP7Q8WUX9 453 aaPredicted RBP23.49■■□□□ 1.35
LIMK2-204ENST00000406516 CARMIL1Q5VZK9 1371 aa23.47■■□□□ 1.35
LIMK2-204ENST00000406516 FHAD1B1AJZ9 1412 aa23.46■■□□□ 1.35
LIMK2-204ENST00000406516 EEA1Q15075 1411 aa23.46■■□□□ 1.35
LIMK2-204ENST00000406516 CEP162Q5TB80 1403 aa23.45■■□□□ 1.34
LIMK2-204ENST00000406516 SYNJ2O15056 1496 aa23.44■■□□□ 1.34
LIMK2-204ENST00000406516 ADAMTS12P58397 1594 aa23.43■■□□□ 1.34
LIMK2-204ENST00000406516 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.41■■□□□ 1.34
LIMK2-204ENST00000406516 TTBK1Q5TCY1 1321 aaPredicted RBP23.4■■□□□ 1.34
LIMK2-204ENST00000406516 TNIKQ9UKE5 1360 aa23.38■■□□□ 1.33
LIMK2-204ENST00000406516 CUL7Q14999 1698 aa23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms