RNA–Protein interactions for RNA: ENST00000406256.7

GDPD3-202, Transcript of glycerophosphodiester phosphodiesterase domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GDPD3, Length 1,397 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GDPD3-202ENST00000406256 NISCHQ9Y2I1 1504 aa38.73■■■■□ 3.79
GDPD3-202ENST00000406256 CCDC180Q9P1Z9 1646 aa34.41■■■■□ 3.1
GDPD3-202ENST00000406256 ABCC9O60706 1549 aa33.43■■■□□ 2.94
GDPD3-202ENST00000406256 ZCCHC6Q5VYS8 1495 aaKnown RBP32.33■■■□□ 2.77
GDPD3-202ENST00000406256 NACADO15069 1562 aa32.25■■■□□ 2.75
GDPD3-202ENST00000406256 RB1CC1Q8TDY2 1594 aa32.23■■■□□ 2.75
GDPD3-202ENST00000406256 MYO15BQ96JP2 1530 aa32.14■■■□□ 2.74
GDPD3-202ENST00000406256 DCAF1Q9Y4B6 1507 aa32.07■■■□□ 2.72
GDPD3-202ENST00000406256 DCAF8L2P0C7V8 631 aa32.04■■■□□ 2.72
GDPD3-202ENST00000406256 UNC13AQ9UPW8 1703 aa31.71■■■□□ 2.67
GDPD3-202ENST00000406256 BICRAQ9NZM4 1560 aa31.39■■■□□ 2.62
GDPD3-202ENST00000406256 SCRIBQ14160 1630 aa31.36■■■□□ 2.61
GDPD3-202ENST00000406256 PABPN1Q86U42 306 aaKnown RBP eCLIP31.21■■■□□ 2.59
GDPD3-202ENST00000406256 SHROOM4Q9ULL8 1493 aa30.95■■■□□ 2.54
GDPD3-202ENST00000406256 DNAJC5BQ9UF47 199 aa30.6■■■□□ 2.49
GDPD3-202ENST00000406256 EIF4G1Q04637 1599 aaKnown RBP30.47■■■□□ 2.47
GDPD3-202ENST00000406256 CC2D2AQ9P2K1 1620 aa30.31■■■□□ 2.44
GDPD3-202ENST00000406256 CECR2Q9BXF3 1484 aa30.18■■■□□ 2.42
GDPD3-202ENST00000406256 SMARCA4P51532 1647 aa30.06■■■□□ 2.4
GDPD3-202ENST00000406256 BAZ1AQ9NRL2 1556 aaPredicted RBP29.97■■■□□ 2.39
GDPD3-202ENST00000406256 MROH2BQ7Z745 1585 aa29.88■■■□□ 2.37
GDPD3-202ENST00000406256 ATAD2BQ9ULI0 1458 aa29.81■■■□□ 2.36
GDPD3-202ENST00000406256 PEG3Q9GZU2 1588 aa29.79■■■□□ 2.36
GDPD3-202ENST00000406256 NCAPD3P42695 1498 aa29.76■■■□□ 2.35
GDPD3-202ENST00000406256 SMARCA2P51531 1590 aa29.74■■■□□ 2.35
GDPD3-202ENST00000406256 HMGXB3Q12766 1538 aa29.66■■■□□ 2.34
GDPD3-202ENST00000406256 WIZO95785 1651 aa29.58■■■□□ 2.33
GDPD3-202ENST00000406256 RSF1Q96T23 1441 aaPredicted RBP29.55■■■□□ 2.32
GDPD3-202ENST00000406256 BAZ1BQ9UIG0 1483 aaKnown RBP29.52■■■□□ 2.32
GDPD3-202ENST00000406256 TOP2AP11388 1531 aaKnown RBP29.24■■■□□ 2.27
GDPD3-202ENST00000406256 NESP48681 1621 aa29.03■■■□□ 2.24
GDPD3-202ENST00000406256 LAMC3Q9Y6N6 1575 aa28.95■■■□□ 2.23
GDPD3-202ENST00000406256 CCDC88BA6NC98 1476 aa28.87■■■□□ 2.21
GDPD3-202ENST00000406256 CADPSQ9ULU8 1353 aa28.85■■■□□ 2.21
GDPD3-202ENST00000406256 CFTRP13569 1480 aa28.77■■■□□ 2.2
GDPD3-202ENST00000406256 KIF21AQ7Z4S6 1674 aa28.76■■■□□ 2.19
GDPD3-202ENST00000406256 SUPT5HO00267 1087 aaKnown RBP28.75■■■□□ 2.19
GDPD3-202ENST00000406256 ERCC6Q03468 1493 aa28.71■■■□□ 2.19
GDPD3-202ENST00000406256 PRDM2Q13029 1718 aa28.68■■■□□ 2.18
GDPD3-202ENST00000406256 PDS5BQ9NTI5 1447 aa28.66■■■□□ 2.18
GDPD3-202ENST00000406256 THOC2Q8NI27 1593 aaKnown RBP28.62■■■□□ 2.17
GDPD3-202ENST00000406256 FANCD2Q9BXW9 1451 aa28.54■■■□□ 2.16
GDPD3-202ENST00000406256 CEP164Q9UPV0 1460 aa28.48■■■□□ 2.15
GDPD3-202ENST00000406256 CUX2O14529 1486 aa28.43■■■□□ 2.14
GDPD3-202ENST00000406256 MRC2Q9UBG0 1479 aa28.42■■■□□ 2.14
GDPD3-202ENST00000406256 WDR62O43379 1518 aa28.38■■■□□ 2.13
GDPD3-202ENST00000406256 URB2Q14146 1524 aaKnown RBP28.31■■■□□ 2.12
GDPD3-202ENST00000406256 TOPBP1Q92547 1522 aa28.13■■■□□ 2.09
GDPD3-202ENST00000406256 DNMBPQ6XZF7 1577 aa28.13■■■□□ 2.09
GDPD3-202ENST00000406256 ABCC8Q09428 1581 aa28.05■■■□□ 2.08
GDPD3-202ENST00000406256 CUX1P39880 1505 aa28.02■■■□□ 2.08
GDPD3-202ENST00000406256 POLA1P09884 1462 aaPredicted RBP27.92■■■□□ 2.06
GDPD3-202ENST00000406256 TARBP1Q13395 1621 aaKnown RBP27.89■■■□□ 2.06
GDPD3-202ENST00000406256 IFT140Q96RY7 1462 aa27.87■■■□□ 2.05
GDPD3-202ENST00000406256 FGD5Q6ZNL6 1462 aa27.85■■■□□ 2.05
GDPD3-202ENST00000406256 BIVM-ERCC5R4GMW8 1640 aa27.84■■■□□ 2.05
GDPD3-202ENST00000406256 SYNJ1O43426 1573 aa27.84■■■□□ 2.05
GDPD3-202ENST00000406256 TOP2BQ02880 1626 aa27.81■■■□□ 2.04
GDPD3-202ENST00000406256 WRNQ14191 1432 aaPredicted RBP eCLIP27.8■■■□□ 2.04
GDPD3-202ENST00000406256 ZNF608Q9ULD9 1512 aaPredicted RBP27.8■■■□□ 2.04
GDPD3-202ENST00000406256 RAD54L2Q9Y4B4 1467 aa27.78■■■□□ 2.04
GDPD3-202ENST00000406256 WDR97A6NE52 1622 aa27.75■■■□□ 2.03
GDPD3-202ENST00000406256 EIF4G3O43432 1585 aaKnown RBP27.72■■■□□ 2.03
GDPD3-202ENST00000406256 SOGA1O94964 1423 aa27.71■■■□□ 2.03
GDPD3-202ENST00000406256 AQRO60306 1485 aaKnown RBP eCLIP27.61■■■□□ 2.01
GDPD3-202ENST00000406256 ABCA10Q8WWZ4 1543 aa27.6■■■□□ 2.01
GDPD3-202ENST00000406256 TDRD9Q8NDG6 1382 aaKnown RBP27.56■■■□□ 2
GDPD3-202ENST00000406256 ABCA5Q8WWZ7 1642 aa27.55■■■□□ 2
GDPD3-202ENST00000406256 PBRM1Q86U86 1689 aa27.48■■□□□ 1.99
GDPD3-202ENST00000406256 GAPVD1Q14C86 1478 aa27.43■■□□□ 1.98
GDPD3-202ENST00000406256 GRIN2BQ13224 1484 aa27.4■■□□□ 1.98
GDPD3-202ENST00000406256 CHD1O14646 1710 aa27.37■■□□□ 1.97
GDPD3-202ENST00000406256 SNAPC4Q5SXM2 1469 aa27.37■■□□□ 1.97
GDPD3-202ENST00000406256 DNAJC5Q9H3Z4 198 aa27.34■■□□□ 1.97
GDPD3-202ENST00000406256 MAGI1Q96QZ7 1491 aaPredicted RBP27.32■■□□□ 1.96
GDPD3-202ENST00000406256 ERICH3Q5RHP9 1530 aa27.26■■□□□ 1.95
GDPD3-202ENST00000406256 ADAMTS12P58397 1594 aa27.25■■□□□ 1.95
GDPD3-202ENST00000406256 SYNJ2O15056 1496 aa27.22■■□□□ 1.95
GDPD3-202ENST00000406256 KIF27Q86VH2 1401 aa27.17■■□□□ 1.94
GDPD3-202ENST00000406256 OSCARQ8IYS5 282 aa27.17■■□□□ 1.94
GDPD3-202ENST00000406256 TRIM41Q8WV44 630 aa27.12■■□□□ 1.93
GDPD3-202ENST00000406256 FHAD1B1AJZ9 1412 aa27.11■■□□□ 1.93
GDPD3-202ENST00000406256 RUSC2Q8N2Y8 1516 aa27.1■■□□□ 1.93
GDPD3-202ENST00000406256 IGF1RP08069 1367 aa27.1■■□□□ 1.93
GDPD3-202ENST00000406256 FBLN2P98095 1184 aa27.09■■□□□ 1.93
GDPD3-202ENST00000406256 GRIN2AQ12879 1464 aa27.08■■□□□ 1.93
GDPD3-202ENST00000406256 CLASP1Q7Z460 1538 aa27.06■■□□□ 1.92
GDPD3-202ENST00000406256 CUL7Q14999 1698 aa27.06■■□□□ 1.92
GDPD3-202ENST00000406256 CHMP7Q8WUX9 453 aaPredicted RBP27.06■■□□□ 1.92
GDPD3-202ENST00000406256 CHIC1Q5VXU3 224 aa27.01■■□□□ 1.91
GDPD3-202ENST00000406256 CEP170Q5SW79 1584 aa27.01■■□□□ 1.91
GDPD3-202ENST00000406256 NUP160Q12769 1436 aa26.98■■□□□ 1.91
GDPD3-202ENST00000406256 RIMBP3CA6NJZ7 1639 aa26.9■■□□□ 1.9
GDPD3-202ENST00000406256 RIMBP3BA6NNM3 1639 aa26.9■■□□□ 1.9
GDPD3-202ENST00000406256 RIMBP3Q9UFD9 1639 aa26.9■■□□□ 1.9
GDPD3-202ENST00000406256 CARMIL1Q5VZK9 1371 aa26.9■■□□□ 1.9
GDPD3-202ENST00000406256 ARHGEF11O15085 1522 aa26.88■■□□□ 1.89
GDPD3-202ENST00000406256 SHROOM2Q13796 1616 aa26.82■■□□□ 1.88
GDPD3-202ENST00000406256 PRXQ9BXM0 1461 aa26.79■■□□□ 1.88
GDPD3-202ENST00000406256 RAPGEF2Q9Y4G8 1499 aa26.77■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 848.1 ms