RNA–Protein interactions for RNA: ENST00000404603.5

SNRPD3-203, Transcript of small nuclear ribonucleoprotein D3 polypeptide, humanhuman

TSL 5

Gene SNRPD3, Length 715 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPD3-203ENST00000404603 AEBP2Q6ZN18 517 aaPredicted RBP21.78■■□□□ 1.08
SNRPD3-203ENST00000404603 CHIC1Q5VXU3 224 aa20.56■□□□□ 0.88
SNRPD3-203ENST00000404603 NISCHQ9Y2I1 1504 aa19.73■□□□□ 0.75
SNRPD3-203ENST00000404603 SENP3Q9H4L4 574 aaPredicted RBP18.58■□□□□ 0.56
SNRPD3-203ENST00000404603 PHF23Q9BUL5 403 aaPredicted RBP18.33■□□□□ 0.52
SNRPD3-203ENST00000404603 CCDC180Q9P1Z9 1646 aa17.54■□□□□ 0.4
SNRPD3-203ENST00000404603 FOXD1Q16676 465 aa17.35■□□□□ 0.37
SNRPD3-203ENST00000404603 ABCC9O60706 1549 aa16.91■□□□□ 0.3
SNRPD3-203ENST00000404603 ZCCHC6Q5VYS8 1495 aaKnown RBP16.5■□□□□ 0.23
SNRPD3-203ENST00000404603 MYO15BQ96JP2 1530 aa16.47■□□□□ 0.23
SNRPD3-203ENST00000404603 DCAF1Q9Y4B6 1507 aa16.45■□□□□ 0.22
SNRPD3-203ENST00000404603 NACADO15069 1562 aa16.44■□□□□ 0.22
SNRPD3-203ENST00000404603 RB1CC1Q8TDY2 1594 aa16.4■□□□□ 0.22
SNRPD3-203ENST00000404603 PLPPR3Q6T4P5 718 aa16.38■□□□□ 0.21
SNRPD3-203ENST00000404603 DCAF8L2P0C7V8 631 aa16.33■□□□□ 0.2
SNRPD3-203ENST00000404603 MSH5O43196 834 aa16.26■□□□□ 0.19
SNRPD3-203ENST00000404603 PIAS4Q8N2W9 510 aaPredicted RBP16.18■□□□□ 0.18
SNRPD3-203ENST00000404603 PPP6R1Q9UPN7 881 aa16.14■□□□□ 0.17
SNRPD3-203ENST00000404603 ADRA2BP18089 450 aa16.08■□□□□ 0.16
SNRPD3-203ENST00000404603 POTEDQ86YR6 584 aa16.08■□□□□ 0.16
SNRPD3-203ENST00000404603 UNC13AQ9UPW8 1703 aa15.89■□□□□ 0.13
SNRPD3-203ENST00000404603 SCRIBQ14160 1630 aa15.89■□□□□ 0.13
SNRPD3-203ENST00000404603 SHROOM4Q9ULL8 1493 aa15.87■□□□□ 0.13
SNRPD3-203ENST00000404603 PABPN1Q86U42 306 aaKnown RBP eCLIP15.78■□□□□ 0.12
SNRPD3-203ENST00000404603 BICRAQ9NZM4 1560 aa15.77■□□□□ 0.11
SNRPD3-203ENST00000404603 DNAJC5BQ9UF47 199 aa15.53■□□□□ 0.08
SNRPD3-203ENST00000404603 EIF4G1Q04637 1599 aaKnown RBP15.37■□□□□ 0.05
SNRPD3-203ENST00000404603 BAZ1AQ9NRL2 1556 aaPredicted RBP15.36■□□□□ 0.05
SNRPD3-203ENST00000404603 CC2D2AQ9P2K1 1620 aa15.28■□□□□ 0.04
SNRPD3-203ENST00000404603 SMARCA4P51532 1647 aa15.27■□□□□ 0.03
SNRPD3-203ENST00000404603 CECR2Q9BXF3 1484 aa15.22■□□□□ 0.03
SNRPD3-203ENST00000404603 SMARCA2P51531 1590 aa15.22■□□□□ 0.03
SNRPD3-203ENST00000404603 PEG3Q9GZU2 1588 aa15.17■□□□□ 0.02
SNRPD3-203ENST00000404603 MROH2BQ7Z745 1585 aa15.13■□□□□ 0.01
SNRPD3-203ENST00000404603 NCAPD3P42695 1498 aa15.12■□□□□ 0.01
SNRPD3-203ENST00000404603 ATAD2BQ9ULI0 1458 aa15.12■□□□□ 0.01
SNRPD3-203ENST00000404603 HMGXB3Q12766 1538 aa15.11■□□□□ 0.01
SNRPD3-203ENST00000404603 RSF1Q96T23 1441 aaPredicted RBP15.09■□□□□ 0.01
SNRPD3-203ENST00000404603 BAZ1BQ9UIG0 1483 aaKnown RBP15.07■□□□□ 0
SNRPD3-203ENST00000404603 WIZO95785 1651 aa14.98□□□□□ -0.01
SNRPD3-203ENST00000404603 TOP2AP11388 1531 aaKnown RBP14.95□□□□□ -0.02
SNRPD3-203ENST00000404603 SUPT5HO00267 1087 aaKnown RBP14.83□□□□□ -0.04
SNRPD3-203ENST00000404603 MAPK8IP2Q13387 824 aaPredicted RBP14.81□□□□□ -0.04
SNRPD3-203ENST00000404603 LAMC3Q9Y6N6 1575 aa14.73□□□□□ -0.05
SNRPD3-203ENST00000404603 DMRT2Q9Y5R5 561 aa14.72□□□□□ -0.05
SNRPD3-203ENST00000404603 SCAF1Q9H7N4 1312 aaKnown RBP14.7□□□□□ -0.06
SNRPD3-203ENST00000404603 CCDC88BA6NC98 1476 aa14.69□□□□□ -0.06
SNRPD3-203ENST00000404603 CADPSQ9ULU8 1353 aa14.69□□□□□ -0.06
SNRPD3-203ENST00000404603 PDS5BQ9NTI5 1447 aa14.65□□□□□ -0.06
SNRPD3-203ENST00000404603 CFTRP13569 1480 aa14.64□□□□□ -0.07
SNRPD3-203ENST00000404603 NESP48681 1621 aa14.64□□□□□ -0.07
SNRPD3-203ENST00000404603 PRDM2Q13029 1718 aa14.58□□□□□ -0.08
SNRPD3-203ENST00000404603 ERCC6Q03468 1493 aa14.57□□□□□ -0.08
SNRPD3-203ENST00000404603 CEP164Q9UPV0 1460 aa14.51□□□□□ -0.09
SNRPD3-203ENST00000404603 FANCD2Q9BXW9 1451 aa14.5□□□□□ -0.09
SNRPD3-203ENST00000404603 KIF21AQ7Z4S6 1674 aa14.46□□□□□ -0.09
SNRPD3-203ENST00000404603 ABCC8Q09428 1581 aa14.44□□□□□ -0.1
SNRPD3-203ENST00000404603 MRC2Q9UBG0 1479 aa14.43□□□□□ -0.1
SNRPD3-203ENST00000404603 THOC2Q8NI27 1593 aaKnown RBP14.42□□□□□ -0.1
SNRPD3-203ENST00000404603 CUX2O14529 1486 aa14.38□□□□□ -0.11
SNRPD3-203ENST00000404603 WDR62O43379 1518 aa14.36□□□□□ -0.11
SNRPD3-203ENST00000404603 PPP4R3CPQ6ZMV5 832 aa14.35□□□□□ -0.11
SNRPD3-203ENST00000404603 DNMBPQ6XZF7 1577 aa14.33□□□□□ -0.12
SNRPD3-203ENST00000404603 URB2Q14146 1524 aaKnown RBP14.28□□□□□ -0.12
SNRPD3-203ENST00000404603 WRNQ14191 1432 aaPredicted RBP eCLIP14.28□□□□□ -0.12
SNRPD3-203ENST00000404603 TOPBP1Q92547 1522 aa14.27□□□□□ -0.12
SNRPD3-203ENST00000404603 TOP2BQ02880 1626 aa14.23□□□□□ -0.13
SNRPD3-203ENST00000404603 CUX1P39880 1505 aa14.21□□□□□ -0.13
SNRPD3-203ENST00000404603 BIVM-ERCC5R4GMW8 1640 aa14.21□□□□□ -0.13
SNRPD3-203ENST00000404603 IFT140Q96RY7 1462 aa14.2□□□□□ -0.14
SNRPD3-203ENST00000404603 WDR97A6NE52 1622 aa14.18□□□□□ -0.14
SNRPD3-203ENST00000404603 POLA1P09884 1462 aaPredicted RBP14.17□□□□□ -0.14
SNRPD3-203ENST00000404603 FGD5Q6ZNL6 1462 aa14.17□□□□□ -0.14
SNRPD3-203ENST00000404603 SYNJ1O43426 1573 aa14.14□□□□□ -0.15
SNRPD3-203ENST00000404603 DCAF8L1A6NGE4 600 aa14.14□□□□□ -0.15
SNRPD3-203ENST00000404603 SOGA1O94964 1423 aa14.14□□□□□ -0.15
SNRPD3-203ENST00000404603 HOXD11P31277 338 aaPredicted RBP14.13□□□□□ -0.15
SNRPD3-203ENST00000404603 TRIM41Q8WV44 630 aa14.1□□□□□ -0.15
SNRPD3-203ENST00000404603 CNKSR2Q8WXI2 1034 aa14.1□□□□□ -0.15
SNRPD3-203ENST00000404603 TARBP1Q13395 1621 aaKnown RBP14.08□□□□□ -0.15
SNRPD3-203ENST00000404603 ABCA10Q8WWZ4 1543 aa14.08□□□□□ -0.16
SNRPD3-203ENST00000404603 CACNB1Q02641 598 aaPredicted RBP14.04□□□□□ -0.16
SNRPD3-203ENST00000404603 RAD54L2Q9Y4B4 1467 aa14.02□□□□□ -0.16
SNRPD3-203ENST00000404603 KIF27Q86VH2 1401 aa14.02□□□□□ -0.16
SNRPD3-203ENST00000404603 EIF4G3O43432 1585 aaKnown RBP14.01□□□□□ -0.17
SNRPD3-203ENST00000404603 ZNF608Q9ULD9 1512 aaPredicted RBP14□□□□□ -0.17
SNRPD3-203ENST00000404603 GAPVD1Q14C86 1478 aa13.99□□□□□ -0.17
SNRPD3-203ENST00000404603 RNF216Q9NWF9 866 aaPredicted RBP13.99□□□□□ -0.17
SNRPD3-203ENST00000404603 GRIN2BQ13224 1484 aa13.99□□□□□ -0.17
SNRPD3-203ENST00000404603 EEA1Q15075 1411 aa13.98□□□□□ -0.17
SNRPD3-203ENST00000404603 ABCA5Q8WWZ7 1642 aa13.97□□□□□ -0.17
SNRPD3-203ENST00000404603 ERICH3Q5RHP9 1530 aa13.96□□□□□ -0.17
SNRPD3-203ENST00000404603 MAGI1Q96QZ7 1491 aaPredicted RBP13.96□□□□□ -0.17
SNRPD3-203ENST00000404603 TDRD9Q8NDG6 1382 aaKnown RBP13.96□□□□□ -0.18
SNRPD3-203ENST00000404603 DNAJC5Q9H3Z4 198 aa13.94□□□□□ -0.18
SNRPD3-203ENST00000404603 AQRO60306 1485 aaKnown RBP eCLIP13.93□□□□□ -0.182e-6■■■□□ 18.1
SNRPD3-203ENST00000404603 PBRM1Q86U86 1689 aa13.92□□□□□ -0.18
SNRPD3-203ENST00000404603 CUL7Q14999 1698 aa13.9□□□□□ -0.18
SNRPD3-203ENST00000404603 SNAPC4Q5SXM2 1469 aa13.87□□□□□ -0.19
SNRPD3-203ENST00000404603 RNF39Q9H2S5 420 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms