RNA–Protein interactions for RNA: ENST00000404548.5

HDAC11-205, Transcript of histone deacetylase 11, humanhuman

TSL 4 BASIC

Gene HDAC11, Length 577 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC11-205ENST00000404548 NISCHQ9Y2I1 1504 aa48.88■■■■■ 5.41
HDAC11-205ENST00000404548 CCDC180Q9P1Z9 1646 aa43.92■■■■■ 4.62
HDAC11-205ENST00000404548 ABCC9O60706 1549 aa43.78■■■■■ 4.6
HDAC11-205ENST00000404548 RB1CC1Q8TDY2 1594 aa41.79■■■■■ 4.28
HDAC11-205ENST00000404548 NACADO15069 1562 aa41.54■■■■■ 4.24
HDAC11-205ENST00000404548 DNAJC5BQ9UF47 199 aa41.07■■■■■ 4.17
HDAC11-205ENST00000404548 MYO15BQ96JP2 1530 aa41.07■■■■■ 4.16
HDAC11-205ENST00000404548 DCAF8L2P0C7V8 631 aa41.02■■■■■ 4.16
HDAC11-205ENST00000404548 UNC13AQ9UPW8 1703 aa40.74■■■■■ 4.11
HDAC11-205ENST00000404548 PABPN1Q86U42 306 aaKnown RBP eCLIP40.71■■■■■ 4.11
HDAC11-205ENST00000404548 BICRAQ9NZM4 1560 aa40.55■■■■■ 4.08
HDAC11-205ENST00000404548 ZCCHC6Q5VYS8 1495 aaKnown RBP40.53■■■■■ 4.08
HDAC11-205ENST00000404548 DCAF1Q9Y4B6 1507 aa40.49■■■■■ 4.07
HDAC11-205ENST00000404548 SHROOM4Q9ULL8 1493 aa40.19■■■■■ 4.03
HDAC11-205ENST00000404548 SCRIBQ14160 1630 aa39.87■■■■□ 3.97
HDAC11-205ENST00000404548 CC2D2AQ9P2K1 1620 aa39.61■■■■□ 3.93
HDAC11-205ENST00000404548 EIF4G1Q04637 1599 aaKnown RBP39.56■■■■□ 3.92
HDAC11-205ENST00000404548 CECR2Q9BXF3 1484 aa39.51■■■■□ 3.92
HDAC11-205ENST00000404548 NCAPD3P42695 1498 aa38.35■■■■□ 3.73
HDAC11-205ENST00000404548 ATAD2BQ9ULI0 1458 aa38.17■■■■□ 3.7
HDAC11-205ENST00000404548 SMARCA4P51532 1647 aa38.12■■■■□ 3.69
HDAC11-205ENST00000404548 SMARCA2P51531 1590 aa38.1■■■■□ 3.69
HDAC11-205ENST00000404548 HMGXB3Q12766 1538 aa38.07■■■■□ 3.69
HDAC11-205ENST00000404548 BAZ1AQ9NRL2 1556 aaPredicted RBP37.97■■■■□ 3.67
HDAC11-205ENST00000404548 CUX2O14529 1486 aa37.91■■■■□ 3.66
HDAC11-205ENST00000404548 PEG3Q9GZU2 1588 aa37.85■■■■□ 3.65
HDAC11-205ENST00000404548 ERCC6Q03468 1493 aa37.85■■■■□ 3.65
HDAC11-205ENST00000404548 DNAJC5Q9H3Z4 198 aa37.83■■■■□ 3.65
HDAC11-205ENST00000404548 BAZ1BQ9UIG0 1483 aaKnown RBP37.79■■■■□ 3.64
HDAC11-205ENST00000404548 NESP48681 1621 aa37.61■■■■□ 3.61
HDAC11-205ENST00000404548 MROH2BQ7Z745 1585 aa37.6■■■■□ 3.61
HDAC11-205ENST00000404548 LAMC3Q9Y6N6 1575 aa37.47■■■■□ 3.59
HDAC11-205ENST00000404548 THOC2Q8NI27 1593 aaKnown RBP37.33■■■■□ 3.57
HDAC11-205ENST00000404548 PDS5BQ9NTI5 1447 aa37.25■■■■□ 3.55
HDAC11-205ENST00000404548 CADPSQ9ULU8 1353 aa37.14■■■■□ 3.54
HDAC11-205ENST00000404548 KIF21AQ7Z4S6 1674 aa37.13■■■■□ 3.53
HDAC11-205ENST00000404548 WIZO95785 1651 aa37.1■■■■□ 3.53
HDAC11-205ENST00000404548 MRC2Q9UBG0 1479 aa36.91■■■■□ 3.5
HDAC11-205ENST00000404548 WDR62O43379 1518 aa36.85■■■■□ 3.49
HDAC11-205ENST00000404548 RSF1Q96T23 1441 aaPredicted RBP36.85■■■■□ 3.49
HDAC11-205ENST00000404548 CEP164Q9UPV0 1460 aa36.75■■■■□ 3.47
HDAC11-205ENST00000404548 CFTRP13569 1480 aa36.74■■■■□ 3.47
HDAC11-205ENST00000404548 TOP2AP11388 1531 aaKnown RBP36.74■■■■□ 3.47
HDAC11-205ENST00000404548 FANCD2Q9BXW9 1451 aa36.69■■■■□ 3.46
HDAC11-205ENST00000404548 URB2Q14146 1524 aaKnown RBP36.38■■■■□ 3.41
HDAC11-205ENST00000404548 PRDM2Q13029 1718 aa36.32■■■■□ 3.4
HDAC11-205ENST00000404548 CCDC88BA6NC98 1476 aa36.27■■■■□ 3.4
HDAC11-205ENST00000404548 OSCARQ8IYS5 282 aa36.07■■■■□ 3.36
HDAC11-205ENST00000404548 IFT140Q96RY7 1462 aa36.05■■■■□ 3.36
HDAC11-205ENST00000404548 TRIM41Q8WV44 630 aa36■■■■□ 3.35
HDAC11-205ENST00000404548 ABCC8Q09428 1581 aa36■■■■□ 3.35
HDAC11-205ENST00000404548 TOPBP1Q92547 1522 aa35.99■■■■□ 3.35
HDAC11-205ENST00000404548 ZNF608Q9ULD9 1512 aaPredicted RBP35.9■■■■□ 3.34
HDAC11-205ENST00000404548 DNMBPQ6XZF7 1577 aa35.89■■■■□ 3.34
HDAC11-205ENST00000404548 EIF4G3O43432 1585 aaKnown RBP35.74■■■■□ 3.31
HDAC11-205ENST00000404548 TARBP1Q13395 1621 aaKnown RBP35.69■■■■□ 3.3
HDAC11-205ENST00000404548 POLA1P09884 1462 aaPredicted RBP35.63■■■■□ 3.29
HDAC11-205ENST00000404548 RIMBP3CA6NJZ7 1639 aa35.59■■■■□ 3.29
HDAC11-205ENST00000404548 RIMBP3BA6NNM3 1639 aa35.59■■■■□ 3.29
HDAC11-205ENST00000404548 RIMBP3Q9UFD9 1639 aa35.59■■■■□ 3.29
HDAC11-205ENST00000404548 AQRO60306 1485 aaKnown RBP eCLIP35.55■■■■□ 3.281e-6■■■■■ 29
HDAC11-205ENST00000404548 ARHGEF11O15085 1522 aa35.52■■■■□ 3.28
HDAC11-205ENST00000404548 WDR97A6NE52 1622 aa35.45■■■■□ 3.27
HDAC11-205ENST00000404548 SOGA1O94964 1423 aa35.43■■■■□ 3.26
HDAC11-205ENST00000404548 RAD54L2Q9Y4B4 1467 aa35.42■■■■□ 3.26
HDAC11-205ENST00000404548 CHD1O14646 1710 aa35.42■■■■□ 3.26
HDAC11-205ENST00000404548 FGD5Q6ZNL6 1462 aa35.38■■■■□ 3.25
HDAC11-205ENST00000404548 CUX1P39880 1505 aa35.34■■■■□ 3.25
HDAC11-205ENST00000404548 TDRD9Q8NDG6 1382 aaKnown RBP35.33■■■■□ 3.25
HDAC11-205ENST00000404548 FBLN2P98095 1184 aa35.24■■■■□ 3.23
HDAC11-205ENST00000404548 SNAPC4Q5SXM2 1469 aa35.23■■■■□ 3.23
HDAC11-205ENST00000404548 MAGI1Q96QZ7 1491 aaPredicted RBP35.22■■■■□ 3.23
HDAC11-205ENST00000404548 GRIN2BQ13224 1484 aa35.18■■■■□ 3.22
HDAC11-205ENST00000404548 ARAP1Q96P48 1450 aa35.16■■■■□ 3.22
HDAC11-205ENST00000404548 CYB5RLQ6IPT4 315 aa35.15■■■■□ 3.22
HDAC11-205ENST00000404548 CLASP1Q7Z460 1538 aa35.11■■■■□ 3.21
HDAC11-205ENST00000404548 SYNJ2O15056 1496 aa35.09■■■■□ 3.21
HDAC11-205ENST00000404548 SYNJ1O43426 1573 aa35.08■■■■□ 3.21
HDAC11-205ENST00000404548 CHMP7Q8WUX9 453 aaPredicted RBP35.07■■■■□ 3.2
HDAC11-205ENST00000404548 ABCA10Q8WWZ4 1543 aa35.04■■■■□ 3.2
HDAC11-205ENST00000404548 GAPVD1Q14C86 1478 aa35.03■■■■□ 3.2
HDAC11-205ENST00000404548 SUPT5HO00267 1087 aaKnown RBP35■■■■□ 3.19
HDAC11-205ENST00000404548 PBRM1Q86U86 1689 aa34.98■■■■□ 3.19
HDAC11-205ENST00000404548 ABCA5Q8WWZ7 1642 aa34.97■■■■□ 3.19
HDAC11-205ENST00000404548 WRNQ14191 1432 aaPredicted RBP eCLIP34.88■■■■□ 3.175e-6■■■■■ 29.2
HDAC11-205ENST00000404548 TOP2BQ02880 1626 aa34.81■■■■□ 3.16
HDAC11-205ENST00000404548 BIVM-ERCC5R4GMW8 1640 aa34.81■■■■□ 3.16
HDAC11-205ENST00000404548 TRHP20396 242 aaPredicted RBP34.74■■■■□ 3.15
HDAC11-205ENST00000404548 GRIN2AQ12879 1464 aa34.72■■■■□ 3.15
HDAC11-205ENST00000404548 ADAMTS12P58397 1594 aa34.7■■■■□ 3.15
HDAC11-205ENST00000404548 NUP160Q12769 1436 aa34.64■■■■□ 3.14
HDAC11-205ENST00000404548 FHAD1B1AJZ9 1412 aa34.62■■■■□ 3.13
HDAC11-205ENST00000404548 ERICH3Q5RHP9 1530 aa34.61■■■■□ 3.13
HDAC11-205ENST00000404548 CEP170Q5SW79 1584 aa34.57■■■■□ 3.12
HDAC11-205ENST00000404548 SHROOM2Q13796 1616 aa34.48■■■■□ 3.11
HDAC11-205ENST00000404548 ERCC6L2Q5T890 1561 aa34.46■■■■□ 3.11
HDAC11-205ENST00000404548 PRG4Q92954 1404 aaPredicted RBP34.23■■■■□ 3.07
HDAC11-205ENST00000404548 RUSC2Q8N2Y8 1516 aa34.22■■■■□ 3.07
HDAC11-205ENST00000404548 JPH4Q96JJ6 628 aa34.19■■■■□ 3.06
HDAC11-205ENST00000404548 KIF27Q86VH2 1401 aa34.13■■■■□ 3.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms