RNA–Protein interactions for RNA: ENST00000399976.6

USP16-204, Transcript of ubiquitin specific peptidase 16, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene USP16, Length 2,963 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP16-204ENST00000399976 NISCHQ9Y2I1 1504 aa18.43■□□□□ 0.54
USP16-204ENST00000399976 CCDC180Q9P1Z9 1646 aa16.6■□□□□ 0.25
USP16-204ENST00000399976 MYO15BQ96JP2 1530 aa15.57■□□□□ 0.08
USP16-204ENST00000399976 ABCC9O60706 1549 aa15.53■□□□□ 0.08
USP16-204ENST00000399976 DCAF1Q9Y4B6 1507 aa15.51■□□□□ 0.07
USP16-204ENST00000399976 ZCCHC6Q5VYS8 1495 aaKnown RBP15.44■□□□□ 0.06
USP16-204ENST00000399976 NACADO15069 1562 aa15.44■□□□□ 0.06
USP16-204ENST00000399976 RB1CC1Q8TDY2 1594 aa15.36■□□□□ 0.05
USP16-204ENST00000399976 UNC13AQ9UPW8 1703 aa15.05■□□□□ 0
USP16-204ENST00000399976 SHROOM4Q9ULL8 1493 aa15.01□□□□□ -0.01
USP16-204ENST00000399976 BICRAQ9NZM4 1560 aa14.84□□□□□ -0.03
USP16-204ENST00000399976 SCRIBQ14160 1630 aa14.75□□□□□ -0.05
USP16-204ENST00000399976 DCAF8L2P0C7V8 631 aa14.69□□□□□ -0.06
USP16-204ENST00000399976 EIF4G1Q04637 1599 aaKnown RBP14.4□□□□□ -0.1
USP16-204ENST00000399976 PABPN1Q86U42 306 aaKnown RBP eCLIP14.34□□□□□ -0.11
USP16-204ENST00000399976 PEG3Q9GZU2 1588 aa14.33□□□□□ -0.12
USP16-204ENST00000399976 BAZ1AQ9NRL2 1556 aaPredicted RBP14.33□□□□□ -0.12
USP16-204ENST00000399976 SMARCA4P51532 1647 aa14.3□□□□□ -0.12
USP16-204ENST00000399976 CC2D2AQ9P2K1 1620 aa14.27□□□□□ -0.13
USP16-204ENST00000399976 SMARCA2P51531 1590 aa14.22□□□□□ -0.13
USP16-204ENST00000399976 HMGXB3Q12766 1538 aa14.21□□□□□ -0.14
USP16-204ENST00000399976 NCAPD3P42695 1498 aa14.16□□□□□ -0.14
USP16-204ENST00000399976 CECR2Q9BXF3 1484 aa14.14□□□□□ -0.15
USP16-204ENST00000399976 ATAD2BQ9ULI0 1458 aa14.1□□□□□ -0.15
USP16-204ENST00000399976 MROH2BQ7Z745 1585 aa14.09□□□□□ -0.15
USP16-204ENST00000399976 RSF1Q96T23 1441 aaPredicted RBP13.98□□□□□ -0.17
USP16-204ENST00000399976 DNAJC5BQ9UF47 199 aa13.98□□□□□ -0.17
USP16-204ENST00000399976 TOP2AP11388 1531 aaKnown RBP13.97□□□□□ -0.17
USP16-204ENST00000399976 WIZO95785 1651 aa13.97□□□□□ -0.17
USP16-204ENST00000399976 BAZ1BQ9UIG0 1483 aaKnown RBP13.97□□□□□ -0.17
USP16-204ENST00000399976 PRDM2Q13029 1718 aa13.87□□□□□ -0.19
USP16-204ENST00000399976 LAMC3Q9Y6N6 1575 aa13.83□□□□□ -0.2
USP16-204ENST00000399976 CFTRP13569 1480 aa13.67□□□□□ -0.22
USP16-204ENST00000399976 CCDC88BA6NC98 1476 aa13.64□□□□□ -0.23
USP16-204ENST00000399976 CADPSQ9ULU8 1353 aa13.63□□□□□ -0.23
USP16-204ENST00000399976 PDS5BQ9NTI5 1447 aa13.58□□□□□ -0.24
USP16-204ENST00000399976 KIF21AQ7Z4S6 1674 aa13.58□□□□□ -0.24
USP16-204ENST00000399976 THOC2Q8NI27 1593 aaKnown RBP13.56□□□□□ -0.24
USP16-204ENST00000399976 CUX2O14529 1486 aa13.5□□□□□ -0.25
USP16-204ENST00000399976 WDR62O43379 1518 aa13.5□□□□□ -0.25
USP16-204ENST00000399976 NESP48681 1621 aa13.5□□□□□ -0.25
USP16-204ENST00000399976 ABCC8Q09428 1581 aa13.48□□□□□ -0.25
USP16-204ENST00000399976 CEP164Q9UPV0 1460 aa13.47□□□□□ -0.25
USP16-204ENST00000399976 FANCD2Q9BXW9 1451 aa13.47□□□□□ -0.25
USP16-204ENST00000399976 MRC2Q9UBG0 1479 aa13.46□□□□□ -0.25
USP16-204ENST00000399976 ERCC6Q03468 1493 aa13.43□□□□□ -0.26
USP16-204ENST00000399976 WDR97A6NE52 1622 aa13.41□□□□□ -0.26
USP16-204ENST00000399976 DNMBPQ6XZF7 1577 aa13.41□□□□□ -0.26
USP16-204ENST00000399976 BIVM-ERCC5R4GMW8 1640 aa13.38□□□□□ -0.27
USP16-204ENST00000399976 URB2Q14146 1524 aaKnown RBP13.33□□□□□ -0.28
USP16-204ENST00000399976 SUPT5HO00267 1087 aaKnown RBP13.32□□□□□ -0.28
USP16-204ENST00000399976 TOPBP1Q92547 1522 aa13.31□□□□□ -0.28
USP16-204ENST00000399976 TOP2BQ02880 1626 aa13.3□□□□□ -0.28
USP16-204ENST00000399976 TARBP1Q13395 1621 aaKnown RBP13.25□□□□□ -0.29
USP16-204ENST00000399976 CUX1P39880 1505 aa13.25□□□□□ -0.29
USP16-204ENST00000399976 IFT140Q96RY7 1462 aa13.24□□□□□ -0.29
USP16-204ENST00000399976 WRNQ14191 1432 aaPredicted RBP eCLIP13.18□□□□□ -0.3
USP16-204ENST00000399976 POLA1P09884 1462 aaPredicted RBP13.18□□□□□ -0.3
USP16-204ENST00000399976 SYNJ1O43426 1573 aa13.18□□□□□ -0.3
USP16-204ENST00000399976 ABCA10Q8WWZ4 1543 aa13.15□□□□□ -0.3
USP16-204ENST00000399976 ABCA5Q8WWZ7 1642 aa13.14□□□□□ -0.31
USP16-204ENST00000399976 FGD5Q6ZNL6 1462 aa13.14□□□□□ -0.31
USP16-204ENST00000399976 EIF4G3O43432 1585 aaKnown RBP13.12□□□□□ -0.31
USP16-204ENST00000399976 PBRM1Q86U86 1689 aa13.1□□□□□ -0.31
USP16-204ENST00000399976 SOGA1O94964 1423 aa13.05□□□□□ -0.32
USP16-204ENST00000399976 ERICH3Q5RHP9 1530 aa13.05□□□□□ -0.32
USP16-204ENST00000399976 MAGI1Q96QZ7 1491 aaPredicted RBP13.02□□□□□ -0.32
USP16-204ENST00000399976 CUL7Q14999 1698 aa13.01□□□□□ -0.33
USP16-204ENST00000399976 GRIN2BQ13224 1484 aa13□□□□□ -0.33
USP16-204ENST00000399976 RAD54L2Q9Y4B4 1467 aa12.98□□□□□ -0.33
USP16-204ENST00000399976 ZNF608Q9ULD9 1512 aaPredicted RBP12.97□□□□□ -0.33
USP16-204ENST00000399976 GAPVD1Q14C86 1478 aa12.97□□□□□ -0.33
USP16-204ENST00000399976 ADAMTS12P58397 1594 aa12.97□□□□□ -0.33
USP16-204ENST00000399976 CHD1O14646 1710 aa12.93□□□□□ -0.34
USP16-204ENST00000399976 EEA1Q15075 1411 aa12.93□□□□□ -0.34
USP16-204ENST00000399976 KIF27Q86VH2 1401 aa12.92□□□□□ -0.34
USP16-204ENST00000399976 SYNJ2O15056 1496 aa12.91□□□□□ -0.34
USP16-204ENST00000399976 AQRO60306 1485 aaKnown RBP eCLIP12.87□□□□□ -0.354e-6■■■□□ 15.8
USP16-204ENST00000399976 FHAD1B1AJZ9 1412 aa12.87□□□□□ -0.35
USP16-204ENST00000399976 SNAPC4Q5SXM2 1469 aa12.87□□□□□ -0.35
USP16-204ENST00000399976 CLASP1Q7Z460 1538 aa12.85□□□□□ -0.35
USP16-204ENST00000399976 TDRD9Q8NDG6 1382 aaKnown RBP12.82□□□□□ -0.36
USP16-204ENST00000399976 SHROOM2Q13796 1616 aa12.82□□□□□ -0.36
USP16-204ENST00000399976 GRIN2AQ12879 1464 aa12.82□□□□□ -0.36
USP16-204ENST00000399976 NUP160Q12769 1436 aa12.81□□□□□ -0.36
USP16-204ENST00000399976 KIF21BO75037 1637 aa12.8□□□□□ -0.36
USP16-204ENST00000399976 CTTNBP2Q8WZ74 1663 aa12.78□□□□□ -0.36
USP16-204ENST00000399976 IGF1RP08069 1367 aa12.78□□□□□ -0.36
USP16-204ENST00000399976 RUSC2Q8N2Y8 1516 aa12.78□□□□□ -0.36
USP16-204ENST00000399976 PRXQ9BXM0 1461 aa12.77□□□□□ -0.37
USP16-204ENST00000399976 CEP170Q5SW79 1584 aa12.75□□□□□ -0.37
USP16-204ENST00000399976 TRIM41Q8WV44 630 aa12.75□□□□□ -0.37
USP16-204ENST00000399976 RAPGEF2Q9Y4G8 1499 aa12.73□□□□□ -0.37
USP16-204ENST00000399976 CHIC1Q5VXU3 224 aa12.72□□□□□ -0.37
USP16-204ENST00000399976 KIAA0586Q9BVV6 1533 aa12.7□□□□□ -0.38
USP16-204ENST00000399976 CARMIL1Q5VZK9 1371 aa12.69□□□□□ -0.38
USP16-204ENST00000399976 OSCARQ8IYS5 282 aa12.67□□□□□ -0.38
USP16-204ENST00000399976 IQGAP2Q13576 1575 aa12.67□□□□□ -0.38
USP16-204ENST00000399976 UGGT2Q9NYU1 1516 aa12.66□□□□□ -0.38
USP16-204ENST00000399976 RIMBP3CA6NJZ7 1639 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms