RNA–Protein interactions for RNA: ENST00000399306.6

CTNS-203, Transcript of cystinosin, lysosomal cystine transporter, humanhuman

TSL 3 BASIC

Gene CTNS, Length 803 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNS-203ENST00000399306 NISCHQ9Y2I1 1504 aa42.51■■■■■ 4.4
CTNS-203ENST00000399306 CCDC180Q9P1Z9 1646 aa37.75■■■■□ 3.63
CTNS-203ENST00000399306 ABCC9O60706 1549 aa36.45■■■■□ 3.43
CTNS-203ENST00000399306 ZCCHC6Q5VYS8 1495 aaKnown RBP35.48■■■■□ 3.27
CTNS-203ENST00000399306 NACADO15069 1562 aa35.42■■■■□ 3.26
CTNS-203ENST00000399306 MYO15BQ96JP2 1530 aa35.4■■■■□ 3.26
CTNS-203ENST00000399306 RB1CC1Q8TDY2 1594 aa35.35■■■■□ 3.25
CTNS-203ENST00000399306 DCAF1Q9Y4B6 1507 aa35.32■■■■□ 3.25
CTNS-203ENST00000399306 DCAF8L2P0C7V8 631 aa35.18■■■■□ 3.22
CTNS-203ENST00000399306 UNC13AQ9UPW8 1703 aa34.5■■■■□ 3.11
CTNS-203ENST00000399306 SCRIBQ14160 1630 aa34.28■■■■□ 3.08
CTNS-203ENST00000399306 BICRAQ9NZM4 1560 aa34.22■■■■□ 3.07
CTNS-203ENST00000399306 SHROOM4Q9ULL8 1493 aa34.08■■■■□ 3.05
CTNS-203ENST00000399306 PABPN1Q86U42 306 aaKnown RBP eCLIP34.06■■■■□ 3.04
CTNS-203ENST00000399306 EIF4G1Q04637 1599 aaKnown RBP33.3■■■□□ 2.92
CTNS-203ENST00000399306 DNAJC5BQ9UF47 199 aa33.17■■■□□ 2.9
CTNS-203ENST00000399306 CC2D2AQ9P2K1 1620 aa33.06■■■□□ 2.88
CTNS-203ENST00000399306 CECR2Q9BXF3 1484 aa32.99■■■□□ 2.87
CTNS-203ENST00000399306 BAZ1AQ9NRL2 1556 aaPredicted RBP32.96■■■□□ 2.87
CTNS-203ENST00000399306 SMARCA4P51532 1647 aa32.91■■■□□ 2.86
CTNS-203ENST00000399306 SMARCA2P51531 1590 aa32.7■■■□□ 2.82
CTNS-203ENST00000399306 MROH2BQ7Z745 1585 aa32.7■■■□□ 2.82
CTNS-203ENST00000399306 PEG3Q9GZU2 1588 aa32.69■■■□□ 2.82
CTNS-203ENST00000399306 NCAPD3P42695 1498 aa32.67■■■□□ 2.82
CTNS-203ENST00000399306 ATAD2BQ9ULI0 1458 aa32.66■■■□□ 2.82
CTNS-203ENST00000399306 HMGXB3Q12766 1538 aa32.54■■■□□ 2.8
CTNS-203ENST00000399306 RSF1Q96T23 1441 aaPredicted RBP32.46■■■□□ 2.79
CTNS-203ENST00000399306 BAZ1BQ9UIG0 1483 aaKnown RBP32.4■■■□□ 2.78
CTNS-203ENST00000399306 WIZO95785 1651 aa32.34■■■□□ 2.77
CTNS-203ENST00000399306 TOP2AP11388 1531 aaKnown RBP32.1■■■□□ 2.73
CTNS-203ENST00000399306 LAMC3Q9Y6N6 1575 aa31.76■■■□□ 2.67
CTNS-203ENST00000399306 CADPSQ9ULU8 1353 aa31.68■■■□□ 2.66
CTNS-203ENST00000399306 SUPT5HO00267 1087 aaKnown RBP31.68■■■□□ 2.66
CTNS-203ENST00000399306 CCDC88BA6NC98 1476 aa31.67■■■□□ 2.66
CTNS-203ENST00000399306 NESP48681 1621 aa31.63■■■□□ 2.65
CTNS-203ENST00000399306 CFTRP13569 1480 aa31.58■■■□□ 2.65
CTNS-203ENST00000399306 PDS5BQ9NTI5 1447 aa31.52■■■□□ 2.64
CTNS-203ENST00000399306 ERCC6Q03468 1493 aa31.45■■■□□ 2.62
CTNS-203ENST00000399306 PRDM2Q13029 1718 aa31.39■■■□□ 2.62
CTNS-203ENST00000399306 KIF21AQ7Z4S6 1674 aa31.32■■■□□ 2.6
CTNS-203ENST00000399306 FANCD2Q9BXW9 1451 aa31.28■■■□□ 2.6
CTNS-203ENST00000399306 CEP164Q9UPV0 1460 aa31.23■■■□□ 2.59
CTNS-203ENST00000399306 THOC2Q8NI27 1593 aaKnown RBP31.18■■■□□ 2.58
CTNS-203ENST00000399306 CUX2O14529 1486 aa31.14■■■□□ 2.57
CTNS-203ENST00000399306 MRC2Q9UBG0 1479 aa31.14■■■□□ 2.57
CTNS-203ENST00000399306 WDR62O43379 1518 aa31.04■■■□□ 2.56
CTNS-203ENST00000399306 ABCC8Q09428 1581 aa30.96■■■□□ 2.55
CTNS-203ENST00000399306 URB2Q14146 1524 aaKnown RBP30.93■■■□□ 2.54
CTNS-203ENST00000399306 DNMBPQ6XZF7 1577 aa30.84■■■□□ 2.53
CTNS-203ENST00000399306 TOPBP1Q92547 1522 aa30.83■■■□□ 2.53
CTNS-203ENST00000399306 CUX1P39880 1505 aa30.67■■■□□ 2.5
CTNS-203ENST00000399306 IFT140Q96RY7 1462 aa30.61■■■□□ 2.49
CTNS-203ENST00000399306 WRNQ14191 1432 aaPredicted RBP eCLIP30.6■■■□□ 2.49
CTNS-203ENST00000399306 POLA1P09884 1462 aaPredicted RBP30.57■■■□□ 2.48
CTNS-203ENST00000399306 TOP2BQ02880 1626 aa30.55■■■□□ 2.48
CTNS-203ENST00000399306 BIVM-ERCC5R4GMW8 1640 aa30.55■■■□□ 2.48
CTNS-203ENST00000399306 FGD5Q6ZNL6 1462 aa30.52■■■□□ 2.48
CTNS-203ENST00000399306 TARBP1Q13395 1621 aaKnown RBP30.48■■■□□ 2.47
CTNS-203ENST00000399306 SYNJ1O43426 1573 aa30.46■■■□□ 2.47
CTNS-203ENST00000399306 SOGA1O94964 1423 aa30.45■■■□□ 2.46
CTNS-203ENST00000399306 WDR97A6NE52 1622 aa30.4■■■□□ 2.46
CTNS-203ENST00000399306 RAD54L2Q9Y4B4 1467 aa30.37■■■□□ 2.45
CTNS-203ENST00000399306 ZNF608Q9ULD9 1512 aaPredicted RBP30.32■■■□□ 2.44
CTNS-203ENST00000399306 ABCA10Q8WWZ4 1543 aa30.32■■■□□ 2.44
CTNS-203ENST00000399306 EIF4G3O43432 1585 aaKnown RBP30.27■■■□□ 2.44
CTNS-203ENST00000399306 AQRO60306 1485 aaKnown RBP eCLIP30.19■■■□□ 2.42
CTNS-203ENST00000399306 TDRD9Q8NDG6 1382 aaKnown RBP30.18■■■□□ 2.42
CTNS-203ENST00000399306 ABCA5Q8WWZ7 1642 aa30.14■■■□□ 2.42
CTNS-203ENST00000399306 GAPVD1Q14C86 1478 aa30.12■■■□□ 2.41
CTNS-203ENST00000399306 GRIN2BQ13224 1484 aa30.1■■■□□ 2.41
CTNS-203ENST00000399306 MAGI1Q96QZ7 1491 aaPredicted RBP30.03■■■□□ 2.4
CTNS-203ENST00000399306 PBRM1Q86U86 1689 aa30.03■■■□□ 2.4
CTNS-203ENST00000399306 TRIM41Q8WV44 630 aa30.01■■■□□ 2.39
CTNS-203ENST00000399306 ERICH3Q5RHP9 1530 aa29.98■■■□□ 2.39
CTNS-203ENST00000399306 KIF27Q86VH2 1401 aa29.97■■■□□ 2.39
CTNS-203ENST00000399306 SNAPC4Q5SXM2 1469 aa29.95■■■□□ 2.39
CTNS-203ENST00000399306 SYNJ2O15056 1496 aa29.87■■■□□ 2.37
CTNS-203ENST00000399306 CHIC1Q5VXU3 224 aa29.83■■■□□ 2.37
CTNS-203ENST00000399306 OSCARQ8IYS5 282 aa29.83■■■□□ 2.37
CTNS-203ENST00000399306 CHD1O14646 1710 aa29.82■■■□□ 2.36
CTNS-203ENST00000399306 ADAMTS12P58397 1594 aa29.82■■■□□ 2.36
CTNS-203ENST00000399306 FHAD1B1AJZ9 1412 aa29.81■■■□□ 2.36
CTNS-203ENST00000399306 IGF1RP08069 1367 aa29.79■■■□□ 2.36
CTNS-203ENST00000399306 CHMP7Q8WUX9 453 aaPredicted RBP29.78■■■□□ 2.36
CTNS-203ENST00000399306 DNAJC5Q9H3Z4 198 aa29.78■■■□□ 2.36
CTNS-203ENST00000399306 CUL7Q14999 1698 aa29.76■■■□□ 2.35
CTNS-203ENST00000399306 FBLN2P98095 1184 aa29.71■■■□□ 2.35
CTNS-203ENST00000399306 GRIN2AQ12879 1464 aa29.69■■■□□ 2.34
CTNS-203ENST00000399306 EEA1Q15075 1411 aa29.67■■■□□ 2.34
CTNS-203ENST00000399306 RUSC2Q8N2Y8 1516 aa29.65■■■□□ 2.34
CTNS-203ENST00000399306 CARMIL1Q5VZK9 1371 aa29.62■■■□□ 2.33
CTNS-203ENST00000399306 NUP160Q12769 1436 aa29.59■■■□□ 2.33
CTNS-203ENST00000399306 CLASP1Q7Z460 1538 aa29.56■■■□□ 2.32
CTNS-203ENST00000399306 CEP170Q5SW79 1584 aa29.5■■■□□ 2.31
CTNS-203ENST00000399306 RAPGEF2Q9Y4G8 1499 aa29.49■■■□□ 2.31
CTNS-203ENST00000399306 PRXQ9BXM0 1461 aa29.48■■■□□ 2.31
CTNS-203ENST00000399306 CSRNP3Q8WYN3 585 aa29.47■■■□□ 2.31
CTNS-203ENST00000399306 KIAA0586Q9BVV6 1533 aa29.38■■■□□ 2.29
CTNS-203ENST00000399306 SHROOM2Q13796 1616 aa29.34■■■□□ 2.29
CTNS-203ENST00000399306 ARHGEF11O15085 1522 aa29.32■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms