RNA–Protein interactions for RNA: ENST00000398958.6

RCC1-204, Transcript of regulator of chromosome condensation 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene RCC1, Length 2,715 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RCC1-204ENST00000398958 NISCHQ9Y2I1 1504 aa23.74■■□□□ 1.39
RCC1-204ENST00000398958 DCAF8L2P0C7V8 631 aa20.79■□□□□ 0.92
RCC1-204ENST00000398958 SHROOM4Q9ULL8 1493 aa20.62■□□□□ 0.89
RCC1-204ENST00000398958 CCDC180Q9P1Z9 1646 aa20.51■□□□□ 0.87
RCC1-204ENST00000398958 SUPT5HO00267 1087 aaKnown RBP19.98■□□□□ 0.79
RCC1-204ENST00000398958 ZCCHC6Q5VYS8 1495 aaKnown RBP19.9■□□□□ 0.78
RCC1-204ENST00000398958 ABCC9O60706 1549 aa19.84■□□□□ 0.77
RCC1-204ENST00000398958 DCAF1Q9Y4B6 1507 aa19.4■□□□□ 0.7
RCC1-204ENST00000398958 SCRIBQ14160 1630 aa19.21■□□□□ 0.67
RCC1-204ENST00000398958 NACADO15069 1562 aa19.17■□□□□ 0.66
RCC1-204ENST00000398958 MYO15BQ96JP2 1530 aa19.13■□□□□ 0.65
RCC1-204ENST00000398958 RB1CC1Q8TDY2 1594 aa19.06■□□□□ 0.64
RCC1-204ENST00000398958 PABPN1Q86U42 306 aaKnown RBP eCLIP19.04■□□□□ 0.64
RCC1-204ENST00000398958 CHIC1Q5VXU3 224 aa18.95■□□□□ 0.62
RCC1-204ENST00000398958 EHMT2Q96KQ7 1210 aa18.87■□□□□ 0.61
RCC1-204ENST00000398958 UNC13AQ9UPW8 1703 aa18.8■□□□□ 0.6
RCC1-204ENST00000398958 CECR2Q9BXF3 1484 aa18.73■□□□□ 0.59
RCC1-204ENST00000398958 HRCP23327 699 aa18.68■□□□□ 0.58
RCC1-204ENST00000398958 FAM9AQ8IZU1 332 aaPredicted RBP18.64■□□□□ 0.57
RCC1-204ENST00000398958 LOC105371045A0A1W2PR82 267 aa18.6■□□□□ 0.57
RCC1-204ENST00000398958 RSF1Q96T23 1441 aaPredicted RBP18.6■□□□□ 0.57
RCC1-204ENST00000398958 BICRAQ9NZM4 1560 aa18.59■□□□□ 0.57
RCC1-204ENST00000398958 MROH2BQ7Z745 1585 aa18.48■□□□□ 0.55
RCC1-204ENST00000398958 PCGF6Q9BYE7 350 aa18.39■□□□□ 0.53
RCC1-204ENST00000398958 TRIM41Q8WV44 630 aa18.36■□□□□ 0.53
RCC1-204ENST00000398958 WIZO95785 1651 aa18.36■□□□□ 0.53
RCC1-204ENST00000398958 PPARGC1BQ86YN6 1023 aaKnown RBP18.31■□□□□ 0.52
RCC1-204ENST00000398958 BAZ1AQ9NRL2 1556 aaPredicted RBP18.28■□□□□ 0.52
RCC1-204ENST00000398958 SMARCA4P51532 1647 aa18.25■□□□□ 0.51
RCC1-204ENST00000398958 EIF4G1Q04637 1599 aaKnown RBP18.03■□□□□ 0.48
RCC1-204ENST00000398958 TTBK1Q5TCY1 1321 aaPredicted RBP18.02■□□□□ 0.48
RCC1-204ENST00000398958 RANGAP1P46060 587 aaPredicted RBP18■□□□□ 0.47
RCC1-204ENST00000398958 ATAD2BQ9ULI0 1458 aa17.99■□□□□ 0.47
RCC1-204ENST00000398958 CCDC88BA6NC98 1476 aa17.97■□□□□ 0.47
RCC1-204ENST00000398958 TOP2AP11388 1531 aaKnown RBP17.96■□□□□ 0.46
RCC1-204ENST00000398958 ABCC8Q09428 1581 aa17.94■□□□□ 0.46
RCC1-204ENST00000398958 BAZ1BQ9UIG0 1483 aaKnown RBP17.9■□□□□ 0.46
RCC1-204ENST00000398958 PEG3Q9GZU2 1588 aa17.89■□□□□ 0.45
RCC1-204ENST00000398958 SMARCA2P51531 1590 aa17.87■□□□□ 0.45
RCC1-204ENST00000398958 PELP1Q8IZL8 1130 aaKnown RBP17.83■□□□□ 0.45
RCC1-204ENST00000398958 TRIM26Q12899 539 aaPredicted RBP17.83■□□□□ 0.44
RCC1-204ENST00000398958 CC2D2AQ9P2K1 1620 aa17.81■□□□□ 0.44
RCC1-204ENST00000398958 DNAJC5BQ9UF47 199 aa17.81■□□□□ 0.44
RCC1-204ENST00000398958 NCAPD3P42695 1498 aa17.76■□□□□ 0.43
RCC1-204ENST00000398958 UBTFP17480 764 aaKnown RBP17.71■□□□□ 0.42
RCC1-204ENST00000398958 SOGA1O94964 1423 aa17.7■□□□□ 0.42
RCC1-204ENST00000398958 RUSC2Q8N2Y8 1516 aa17.67■□□□□ 0.42
RCC1-204ENST00000398958 HMGXB3Q12766 1538 aa17.66■□□□□ 0.42
RCC1-204ENST00000398958 ZEB1P37275 1124 aaPredicted RBP17.64■□□□□ 0.42
RCC1-204ENST00000398958 SCAF1Q9H7N4 1312 aaKnown RBP17.6■□□□□ 0.41
RCC1-204ENST00000398958 WRNQ14191 1432 aaPredicted RBP eCLIP17.52■□□□□ 0.4
RCC1-204ENST00000398958 CSRNP3Q8WYN3 585 aa17.5■□□□□ 0.39
RCC1-204ENST00000398958 NESP48681 1621 aa17.43■□□□□ 0.38
RCC1-204ENST00000398958 SYNJ1O43426 1573 aa17.41■□□□□ 0.38
RCC1-204ENST00000398958 CFTRP13569 1480 aa17.4■□□□□ 0.38
RCC1-204ENST00000398958 CADPSQ9ULU8 1353 aa17.39■□□□□ 0.37
RCC1-204ENST00000398958 CEP162Q5TB80 1403 aa17.38■□□□□ 0.37
RCC1-204ENST00000398958 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.38■□□□□ 0.37
RCC1-204ENST00000398958 TNIKQ9UKE5 1360 aa17.26■□□□□ 0.35
RCC1-204ENST00000398958 P3H3Q8IVL6 736 aa17.26■□□□□ 0.35
RCC1-204ENST00000398958 ATP1B4Q9UN42 357 aaPredicted RBP17.23■□□□□ 0.35
RCC1-204ENST00000398958 CCER1Q8TC90 406 aaPredicted RBP17.23■□□□□ 0.35
RCC1-204ENST00000398958 FANCD2Q9BXW9 1451 aa17.23■□□□□ 0.35
RCC1-204ENST00000398958 CUX1P39880 1505 aa17.22■□□□□ 0.35
RCC1-204ENST00000398958 ACIN1Q9UKV3 1341 aaKnown RBP17.22■□□□□ 0.35
RCC1-204ENST00000398958 GOLGA3Q08378 1498 aa17.22■□□□□ 0.35
RCC1-204ENST00000398958 RAPGEF2Q9Y4G8 1499 aa17.19■□□□□ 0.34
RCC1-204ENST00000398958 EEA1Q15075 1411 aa17.19■□□□□ 0.34
RCC1-204ENST00000398958 NEUROD1Q13562 356 aa17.18■□□□□ 0.34
RCC1-204ENST00000398958 PRDM2Q13029 1718 aa17.18■□□□□ 0.34
RCC1-204ENST00000398958 TOP2BQ02880 1626 aa17.17■□□□□ 0.34
RCC1-204ENST00000398958 LAMC3Q9Y6N6 1575 aa17.12■□□□□ 0.33
RCC1-204ENST00000398958 HNRNPUL2Q1KMD3 747 aaKnown RBP17.12■□□□□ 0.33
RCC1-204ENST00000398958 CEP164Q9UPV0 1460 aa17.12■□□□□ 0.33
RCC1-204ENST00000398958 RAD54L2Q9Y4B4 1467 aa17.11■□□□□ 0.33
RCC1-204ENST00000398958 CLIP1P30622 1438 aa17.1■□□□□ 0.33
RCC1-204ENST00000398958 BIVM-ERCC5R4GMW8 1640 aa17.1■□□□□ 0.33
RCC1-204ENST00000398958 MYT1Q01538 1121 aa17.1■□□□□ 0.33
RCC1-204ENST00000398958 CUX2O14529 1486 aa17.09■□□□□ 0.33
RCC1-204ENST00000398958 GTF3C3Q9Y5Q9 886 aa17.09■□□□□ 0.33
RCC1-204ENST00000398958 KIF21AQ7Z4S6 1674 aa17.08■□□□□ 0.32
RCC1-204ENST00000398958 PDS5BQ9NTI5 1447 aa17.07■□□□□ 0.32
RCC1-204ENST00000398958 APLP2Q06481 763 aa17.06■□□□□ 0.32
RCC1-204ENST00000398958 TDRD9Q8NDG6 1382 aaKnown RBP17.06■□□□□ 0.32
RCC1-204ENST00000398958 FGD5Q6ZNL6 1462 aa17.05■□□□□ 0.32
RCC1-204ENST00000398958 ARID3CA6NKF2 412 aa17.05■□□□□ 0.32
RCC1-204ENST00000398958 CENPBP07199 599 aaPredicted RBP17.05■□□□□ 0.32
RCC1-204ENST00000398958 ITGAEP38570 1179 aa17.05■□□□□ 0.32
RCC1-204ENST00000398958 URB2Q14146 1524 aaKnown RBP17.03■□□□□ 0.32
RCC1-204ENST00000398958 DIEXFQ68CQ4 756 aaKnown RBP17.02■□□□□ 0.31
RCC1-204ENST00000398958 TOPBP1Q92547 1522 aa17.02■□□□□ 0.31
RCC1-204ENST00000398958 KIF21BO75037 1637 aa17.01■□□□□ 0.31
RCC1-204ENST00000398958 KIF27Q86VH2 1401 aa16.98■□□□□ 0.31
RCC1-204ENST00000398958 POLA1P09884 1462 aaPredicted RBP16.96■□□□□ 0.31
RCC1-204ENST00000398958 DNMBPQ6XZF7 1577 aa16.96■□□□□ 0.31
RCC1-204ENST00000398958 FBLN2P98095 1184 aa16.95■□□□□ 0.3
RCC1-204ENST00000398958 ERCC6Q03468 1493 aa16.93■□□□□ 0.3
RCC1-204ENST00000398958 KANK4Q5T7N3 995 aaPredicted RBP16.93■□□□□ 0.3
RCC1-204ENST00000398958 IGF1RP08069 1367 aa16.92■□□□□ 0.3
RCC1-204ENST00000398958 VPS8Q8N3P4 1428 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms