RNA–Protein interactions for RNA: ENST00000396366.6

FXN-203, Transcript of frataxin, humanhuman

TSL 2 BASIC

Gene FXN, Length 922 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FXN-203ENST00000396366 NISCHQ9Y2I1 1504 aa45.37■■■■■ 4.85
FXN-203ENST00000396366 CCDC180Q9P1Z9 1646 aa40.49■■■■■ 4.07
FXN-203ENST00000396366 ABCC9O60706 1549 aa40.3■■■■■ 4.04
FXN-203ENST00000396366 RB1CC1Q8TDY2 1594 aa38.4■■■■□ 3.74
FXN-203ENST00000396366 DCAF8L2P0C7V8 631 aa38.28■■■■□ 3.72
FXN-203ENST00000396366 NACADO15069 1562 aa38.22■■■■□ 3.71
FXN-203ENST00000396366 MYO15BQ96JP2 1530 aa37.76■■■■□ 3.63
FXN-203ENST00000396366 ZCCHC6Q5VYS8 1495 aaKnown RBP37.64■■■■□ 3.62
FXN-203ENST00000396366 PABPN1Q86U42 306 aaKnown RBP eCLIP37.64■■■■□ 3.62
FXN-203ENST00000396366 UNC13AQ9UPW8 1703 aa37.62■■■■□ 3.61
FXN-203ENST00000396366 DNAJC5BQ9UF47 199 aa37.59■■■■□ 3.61
FXN-203ENST00000396366 DCAF1Q9Y4B6 1507 aa37.42■■■■□ 3.58
FXN-203ENST00000396366 BICRAQ9NZM4 1560 aa37.35■■■■□ 3.57
FXN-203ENST00000396366 SCRIBQ14160 1630 aa37.03■■■■□ 3.52
FXN-203ENST00000396366 SHROOM4Q9ULL8 1493 aa36.7■■■■□ 3.47
FXN-203ENST00000396366 CC2D2AQ9P2K1 1620 aa36.38■■■■□ 3.41
FXN-203ENST00000396366 EIF4G1Q04637 1599 aaKnown RBP36.37■■■■□ 3.41
FXN-203ENST00000396366 CECR2Q9BXF3 1484 aa36.23■■■■□ 3.39
FXN-203ENST00000396366 SMARCA4P51532 1647 aa35.32■■■■□ 3.24
FXN-203ENST00000396366 NCAPD3P42695 1498 aa35.31■■■■□ 3.24
FXN-203ENST00000396366 ATAD2BQ9ULI0 1458 aa35.28■■■■□ 3.24
FXN-203ENST00000396366 BAZ1AQ9NRL2 1556 aaPredicted RBP35.16■■■■□ 3.22
FXN-203ENST00000396366 SMARCA2P51531 1590 aa35.13■■■■□ 3.21
FXN-203ENST00000396366 HMGXB3Q12766 1538 aa35.03■■■■□ 3.2
FXN-203ENST00000396366 MROH2BQ7Z745 1585 aa35.01■■■■□ 3.2
FXN-203ENST00000396366 BAZ1BQ9UIG0 1483 aaKnown RBP34.94■■■■□ 3.18
FXN-203ENST00000396366 PEG3Q9GZU2 1588 aa34.93■■■■□ 3.18
FXN-203ENST00000396366 NESP48681 1621 aa34.74■■■■□ 3.15
FXN-203ENST00000396366 ERCC6Q03468 1493 aa34.71■■■■□ 3.15
FXN-203ENST00000396366 WIZO95785 1651 aa34.62■■■■□ 3.13
FXN-203ENST00000396366 CUX2O14529 1486 aa34.47■■■■□ 3.11
FXN-203ENST00000396366 LAMC3Q9Y6N6 1575 aa34.43■■■■□ 3.1
FXN-203ENST00000396366 RSF1Q96T23 1441 aaPredicted RBP34.4■■■■□ 3.1
FXN-203ENST00000396366 CADPSQ9ULU8 1353 aa34.27■■■■□ 3.08
FXN-203ENST00000396366 KIF21AQ7Z4S6 1674 aa34.26■■■■□ 3.08
FXN-203ENST00000396366 THOC2Q8NI27 1593 aaKnown RBP34.23■■■■□ 3.07
FXN-203ENST00000396366 PDS5BQ9NTI5 1447 aa34.23■■■■□ 3.07
FXN-203ENST00000396366 DNAJC5Q9H3Z4 198 aa34.17■■■■□ 3.06
FXN-203ENST00000396366 TOP2AP11388 1531 aaKnown RBP34.13■■■■□ 3.05
FXN-203ENST00000396366 CFTRP13569 1480 aa33.94■■■■□ 3.02
FXN-203ENST00000396366 MRC2Q9UBG0 1479 aa33.94■■■■□ 3.02
FXN-203ENST00000396366 FANCD2Q9BXW9 1451 aa33.88■■■■□ 3.01
FXN-203ENST00000396366 CEP164Q9UPV0 1460 aa33.86■■■■□ 3.01
FXN-203ENST00000396366 WDR62O43379 1518 aa33.83■■■■□ 3.01
FXN-203ENST00000396366 CCDC88BA6NC98 1476 aa33.81■■■■□ 3
FXN-203ENST00000396366 URB2Q14146 1524 aaKnown RBP33.61■■■□□ 2.97
FXN-203ENST00000396366 PRDM2Q13029 1718 aa33.59■■■□□ 2.97
FXN-203ENST00000396366 TOPBP1Q92547 1522 aa33.28■■■□□ 2.92
FXN-203ENST00000396366 SUPT5HO00267 1087 aaKnown RBP33.22■■■□□ 2.91
FXN-203ENST00000396366 IFT140Q96RY7 1462 aa33.17■■■□□ 2.9
FXN-203ENST00000396366 ZNF608Q9ULD9 1512 aaPredicted RBP33.17■■■□□ 2.9
FXN-203ENST00000396366 DNMBPQ6XZF7 1577 aa33.17■■■□□ 2.9
FXN-203ENST00000396366 ABCC8Q09428 1581 aa33.16■■■□□ 2.9
FXN-203ENST00000396366 OSCARQ8IYS5 282 aa33.04■■■□□ 2.88
FXN-203ENST00000396366 TARBP1Q13395 1621 aaKnown RBP32.97■■■□□ 2.87
FXN-203ENST00000396366 POLA1P09884 1462 aaPredicted RBP32.97■■■□□ 2.87
FXN-203ENST00000396366 EIF4G3O43432 1585 aaKnown RBP32.94■■■□□ 2.86
FXN-203ENST00000396366 AQRO60306 1485 aaKnown RBP eCLIP32.93■■■□□ 2.86
FXN-203ENST00000396366 RAD54L2Q9Y4B4 1467 aa32.9■■■□□ 2.86
FXN-203ENST00000396366 TRIM41Q8WV44 630 aa32.88■■■□□ 2.85
FXN-203ENST00000396366 CUX1P39880 1505 aa32.86■■■□□ 2.85
FXN-203ENST00000396366 SOGA1O94964 1423 aa32.85■■■□□ 2.85
FXN-203ENST00000396366 FGD5Q6ZNL6 1462 aa32.82■■■□□ 2.84
FXN-203ENST00000396366 TDRD9Q8NDG6 1382 aaKnown RBP32.78■■■□□ 2.84
FXN-203ENST00000396366 CHD1O14646 1710 aa32.66■■■□□ 2.82
FXN-203ENST00000396366 FBLN2P98095 1184 aa32.65■■■□□ 2.82
FXN-203ENST00000396366 RIMBP3CA6NJZ7 1639 aa32.57■■■□□ 2.8
FXN-203ENST00000396366 RIMBP3BA6NNM3 1639 aa32.57■■■□□ 2.8
FXN-203ENST00000396366 RIMBP3Q9UFD9 1639 aa32.57■■■□□ 2.8
FXN-203ENST00000396366 SNAPC4Q5SXM2 1469 aa32.54■■■□□ 2.8
FXN-203ENST00000396366 WDR97A6NE52 1622 aa32.54■■■□□ 2.8
FXN-203ENST00000396366 ARHGEF11O15085 1522 aa32.49■■■□□ 2.79
FXN-203ENST00000396366 GRIN2BQ13224 1484 aa32.47■■■□□ 2.79
FXN-203ENST00000396366 ABCA10Q8WWZ4 1543 aa32.43■■■□□ 2.78
FXN-203ENST00000396366 GAPVD1Q14C86 1478 aa32.42■■■□□ 2.78
FXN-203ENST00000396366 CHMP7Q8WUX9 453 aaPredicted RBP32.42■■■□□ 2.78
FXN-203ENST00000396366 WRNQ14191 1432 aaPredicted RBP eCLIP32.42■■■□□ 2.78
FXN-203ENST00000396366 MAGI1Q96QZ7 1491 aaPredicted RBP32.42■■■□□ 2.78
FXN-203ENST00000396366 SYNJ1O43426 1573 aa32.41■■■□□ 2.78
FXN-203ENST00000396366 PBRM1Q86U86 1689 aa32.39■■■□□ 2.78
FXN-203ENST00000396366 TOP2BQ02880 1626 aa32.38■■■□□ 2.77
FXN-203ENST00000396366 BIVM-ERCC5R4GMW8 1640 aa32.38■■■□□ 2.77
FXN-203ENST00000396366 ABCA5Q8WWZ7 1642 aa32.36■■■□□ 2.77
FXN-203ENST00000396366 SYNJ2O15056 1496 aa32.33■■■□□ 2.77
FXN-203ENST00000396366 CYB5RLQ6IPT4 315 aa32.3■■■□□ 2.76
FXN-203ENST00000396366 CLASP1Q7Z460 1538 aa32.26■■■□□ 2.76
FXN-203ENST00000396366 ARAP1Q96P48 1450 aa32.21■■■□□ 2.75
FXN-203ENST00000396366 ADAMTS12P58397 1594 aa32.08■■■□□ 2.73
FXN-203ENST00000396366 GRIN2AQ12879 1464 aa32.07■■■□□ 2.72
FXN-203ENST00000396366 ERICH3Q5RHP9 1530 aa32.01■■■□□ 2.72
FXN-203ENST00000396366 FHAD1B1AJZ9 1412 aa32■■■□□ 2.71
FXN-203ENST00000396366 CEP170Q5SW79 1584 aa31.97■■■□□ 2.71
FXN-203ENST00000396366 NUP160Q12769 1436 aa31.94■■■□□ 2.7
FXN-203ENST00000396366 ERCC6L2Q5T890 1561 aa31.88■■■□□ 2.69
FXN-203ENST00000396366 TRHP20396 242 aaPredicted RBP31.82■■■□□ 2.68
FXN-203ENST00000396366 IGF1RP08069 1367 aa31.77■■■□□ 2.68
FXN-203ENST00000396366 KIF27Q86VH2 1401 aa31.75■■■□□ 2.67
FXN-203ENST00000396366 SHROOM2Q13796 1616 aa31.75■■■□□ 2.67
FXN-203ENST00000396366 JPH4Q96JJ6 628 aa31.67■■■□□ 2.66
FXN-203ENST00000396366 PRG4Q92954 1404 aaPredicted RBP31.65■■■□□ 2.66
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms