RNA–Protein interactions for RNA: ENST00000395795.5

CXCL12-206, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 5 BASIC

Gene CXCL12, Length 404 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-206ENST00000395795 NISCHQ9Y2I1 1504 aa40.51■■■■■ 4.08
CXCL12-206ENST00000395795 CCDC180Q9P1Z9 1646 aa36.16■■■■□ 3.38
CXCL12-206ENST00000395795 ABCC9O60706 1549 aa35.9■■■■□ 3.34
CXCL12-206ENST00000395795 RB1CC1Q8TDY2 1594 aa34.25■■■■□ 3.07
CXCL12-206ENST00000395795 NACADO15069 1562 aa34.12■■■■□ 3.05
CXCL12-206ENST00000395795 DCAF8L2P0C7V8 631 aa33.87■■■■□ 3.01
CXCL12-206ENST00000395795 MYO15BQ96JP2 1530 aa33.82■■■■□ 3
CXCL12-206ENST00000395795 ZCCHC6Q5VYS8 1495 aaKnown RBP33.65■■■□□ 2.98
CXCL12-206ENST00000395795 DNAJC5BQ9UF47 199 aa33.58■■■□□ 2.97
CXCL12-206ENST00000395795 UNC13AQ9UPW8 1703 aa33.55■■■□□ 2.96
CXCL12-206ENST00000395795 DCAF1Q9Y4B6 1507 aa33.48■■■□□ 2.95
CXCL12-206ENST00000395795 PABPN1Q86U42 306 aaKnown RBP eCLIP33.48■■■□□ 2.95
CXCL12-206ENST00000395795 BICRAQ9NZM4 1560 aa33.4■■■□□ 2.94
CXCL12-206ENST00000395795 SCRIBQ14160 1630 aa32.96■■■□□ 2.87
CXCL12-206ENST00000395795 SHROOM4Q9ULL8 1493 aa32.86■■■□□ 2.85
CXCL12-206ENST00000395795 EIF4G1Q04637 1599 aaKnown RBP32.47■■■□□ 2.79
CXCL12-206ENST00000395795 CC2D2AQ9P2K1 1620 aa32.46■■■□□ 2.79
CXCL12-206ENST00000395795 CECR2Q9BXF3 1484 aa32.3■■■□□ 2.76
CXCL12-206ENST00000395795 NCAPD3P42695 1498 aa31.57■■■□□ 2.64
CXCL12-206ENST00000395795 SMARCA4P51532 1647 aa31.51■■■□□ 2.63
CXCL12-206ENST00000395795 ATAD2BQ9ULI0 1458 aa31.51■■■□□ 2.63
CXCL12-206ENST00000395795 BAZ1AQ9NRL2 1556 aaPredicted RBP31.35■■■□□ 2.61
CXCL12-206ENST00000395795 SMARCA2P51531 1590 aa31.34■■■□□ 2.61
CXCL12-206ENST00000395795 HMGXB3Q12766 1538 aa31.32■■■□□ 2.6
CXCL12-206ENST00000395795 PEG3Q9GZU2 1588 aa31.26■■■□□ 2.59
CXCL12-206ENST00000395795 MROH2BQ7Z745 1585 aa31.24■■■□□ 2.59
CXCL12-206ENST00000395795 BAZ1BQ9UIG0 1483 aaKnown RBP31.13■■■□□ 2.57
CXCL12-206ENST00000395795 NESP48681 1621 aa30.98■■■□□ 2.55
CXCL12-206ENST00000395795 ERCC6Q03468 1493 aa30.87■■■□□ 2.53
CXCL12-206ENST00000395795 WIZO95785 1651 aa30.83■■■□□ 2.53
CXCL12-206ENST00000395795 CUX2O14529 1486 aa30.81■■■□□ 2.52
CXCL12-206ENST00000395795 LAMC3Q9Y6N6 1575 aa30.72■■■□□ 2.51
CXCL12-206ENST00000395795 RSF1Q96T23 1441 aaPredicted RBP30.7■■■□□ 2.5
CXCL12-206ENST00000395795 THOC2Q8NI27 1593 aaKnown RBP30.6■■■□□ 2.49
CXCL12-206ENST00000395795 CADPSQ9ULU8 1353 aa30.58■■■□□ 2.49
CXCL12-206ENST00000395795 KIF21AQ7Z4S6 1674 aa30.52■■■□□ 2.48
CXCL12-206ENST00000395795 DNAJC5Q9H3Z4 198 aa30.52■■■□□ 2.48
CXCL12-206ENST00000395795 PDS5BQ9NTI5 1447 aa30.51■■■□□ 2.47
CXCL12-206ENST00000395795 TOP2AP11388 1531 aaKnown RBP30.46■■■□□ 2.47
CXCL12-206ENST00000395795 CFTRP13569 1480 aa30.33■■■□□ 2.45
CXCL12-206ENST00000395795 MRC2Q9UBG0 1479 aa30.28■■■□□ 2.44
CXCL12-206ENST00000395795 WDR62O43379 1518 aa30.23■■■□□ 2.43
CXCL12-206ENST00000395795 FANCD2Q9BXW9 1451 aa30.21■■■□□ 2.43
CXCL12-206ENST00000395795 CEP164Q9UPV0 1460 aa30.18■■■□□ 2.42
CXCL12-206ENST00000395795 CCDC88BA6NC98 1476 aa30.14■■■□□ 2.42
CXCL12-206ENST00000395795 URB2Q14146 1524 aaKnown RBP30.01■■■□□ 2.4
CXCL12-206ENST00000395795 PRDM2Q13029 1718 aa29.93■■■□□ 2.38
CXCL12-206ENST00000395795 TOPBP1Q92547 1522 aa29.7■■■□□ 2.34
CXCL12-206ENST00000395795 IFT140Q96RY7 1462 aa29.6■■■□□ 2.33
CXCL12-206ENST00000395795 ZNF608Q9ULD9 1512 aaPredicted RBP29.6■■■□□ 2.33
CXCL12-206ENST00000395795 DNMBPQ6XZF7 1577 aa29.59■■■□□ 2.33
CXCL12-206ENST00000395795 ABCC8Q09428 1581 aa29.56■■■□□ 2.32
CXCL12-206ENST00000395795 TARBP1Q13395 1621 aaKnown RBP29.45■■■□□ 2.3
CXCL12-206ENST00000395795 POLA1P09884 1462 aaPredicted RBP29.42■■■□□ 2.3
CXCL12-206ENST00000395795 OSCARQ8IYS5 282 aa29.41■■■□□ 2.3
CXCL12-206ENST00000395795 SUPT5HO00267 1087 aaKnown RBP29.4■■■□□ 2.3
CXCL12-206ENST00000395795 EIF4G3O43432 1585 aaKnown RBP29.38■■■□□ 2.29
CXCL12-206ENST00000395795 AQRO60306 1485 aaKnown RBP eCLIP29.33■■■□□ 2.29
CXCL12-206ENST00000395795 CUX1P39880 1505 aa29.33■■■□□ 2.29
CXCL12-206ENST00000395795 RAD54L2Q9Y4B4 1467 aa29.32■■■□□ 2.28
CXCL12-206ENST00000395795 FGD5Q6ZNL6 1462 aa29.26■■■□□ 2.27
CXCL12-206ENST00000395795 SOGA1O94964 1423 aa29.24■■■□□ 2.27
CXCL12-206ENST00000395795 TDRD9Q8NDG6 1382 aaKnown RBP29.18■■■□□ 2.26
CXCL12-206ENST00000395795 TRIM41Q8WV44 630 aa29.17■■■□□ 2.26
CXCL12-206ENST00000395795 CHD1O14646 1710 aa29.08■■■□□ 2.25
CXCL12-206ENST00000395795 WDR97A6NE52 1622 aa29.08■■■□□ 2.25
CXCL12-206ENST00000395795 RIMBP3CA6NJZ7 1639 aa29.05■■■□□ 2.24
CXCL12-206ENST00000395795 RIMBP3BA6NNM3 1639 aa29.05■■■□□ 2.24
CXCL12-206ENST00000395795 RIMBP3Q9UFD9 1639 aa29.05■■■□□ 2.24
CXCL12-206ENST00000395795 SNAPC4Q5SXM2 1469 aa29.01■■■□□ 2.23
CXCL12-206ENST00000395795 ARHGEF11O15085 1522 aa29■■■□□ 2.23
CXCL12-206ENST00000395795 ABCA10Q8WWZ4 1543 aa28.96■■■□□ 2.23
CXCL12-206ENST00000395795 GRIN2BQ13224 1484 aa28.96■■■□□ 2.23
CXCL12-206ENST00000395795 MAGI1Q96QZ7 1491 aaPredicted RBP28.93■■■□□ 2.22
CXCL12-206ENST00000395795 FBLN2P98095 1184 aa28.93■■■□□ 2.22
CXCL12-206ENST00000395795 ABCA5Q8WWZ7 1642 aa28.9■■■□□ 2.22
CXCL12-206ENST00000395795 GAPVD1Q14C86 1478 aa28.9■■■□□ 2.22
CXCL12-206ENST00000395795 SYNJ1O43426 1573 aa28.89■■■□□ 2.22
CXCL12-206ENST00000395795 WRNQ14191 1432 aaPredicted RBP eCLIP28.88■■■□□ 2.21
CXCL12-206ENST00000395795 TOP2BQ02880 1626 aa28.88■■■□□ 2.21
CXCL12-206ENST00000395795 BIVM-ERCC5R4GMW8 1640 aa28.88■■■□□ 2.21
CXCL12-206ENST00000395795 CLASP1Q7Z460 1538 aa28.84■■■□□ 2.21
CXCL12-206ENST00000395795 SYNJ2O15056 1496 aa28.84■■■□□ 2.21
CXCL12-206ENST00000395795 PBRM1Q86U86 1689 aa28.83■■■□□ 2.21
CXCL12-206ENST00000395795 CHMP7Q8WUX9 453 aaPredicted RBP28.79■■■□□ 2.2
CXCL12-206ENST00000395795 ARAP1Q96P48 1450 aa28.78■■■□□ 2.2
CXCL12-206ENST00000395795 CYB5RLQ6IPT4 315 aa28.71■■■□□ 2.19
CXCL12-206ENST00000395795 ADAMTS12P58397 1594 aa28.63■■■□□ 2.17
CXCL12-206ENST00000395795 GRIN2AQ12879 1464 aa28.6■■■□□ 2.17
CXCL12-206ENST00000395795 ERICH3Q5RHP9 1530 aa28.57■■■□□ 2.16
CXCL12-206ENST00000395795 NUP160Q12769 1436 aa28.56■■■□□ 2.16
CXCL12-206ENST00000395795 FHAD1B1AJZ9 1412 aa28.54■■■□□ 2.16
CXCL12-206ENST00000395795 CEP170Q5SW79 1584 aa28.53■■■□□ 2.16
CXCL12-206ENST00000395795 ERCC6L2Q5T890 1561 aa28.44■■■□□ 2.14
CXCL12-206ENST00000395795 SHROOM2Q13796 1616 aa28.39■■■□□ 2.13
CXCL12-206ENST00000395795 IGF1RP08069 1367 aa28.34■■■□□ 2.13
CXCL12-206ENST00000395795 KIF27Q86VH2 1401 aa28.26■■■□□ 2.12
CXCL12-206ENST00000395795 RUSC2Q8N2Y8 1516 aa28.23■■■□□ 2.11
CXCL12-206ENST00000395795 TRHP20396 242 aaPredicted RBP28.19■■■□□ 2.1
CXCL12-206ENST00000395795 JPH4Q96JJ6 628 aa28.19■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms