RNA–Protein interactions for RNA: ENST00000394800.6

MATR3-230, Transcript of matrin 3, humanhuman

TSL 5 BASIC

Gene MATR3, Length 5,513 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MATR3-230ENST00000394800 NISCHQ9Y2I1 1504 aa12.03□□□□□ -0.48
MATR3-230ENST00000394800 CCDC180Q9P1Z9 1646 aa10.28□□□□□ -0.76
MATR3-230ENST00000394800 SLC24A1O60721 1099 aa10.27□□□□□ -0.77
MATR3-230ENST00000394800 MYT1Q01538 1121 aa10.19□□□□□ -0.78
MATR3-230ENST00000394800 SHROOM4Q9ULL8 1493 aa10.15□□□□□ -0.78
MATR3-230ENST00000394800 ZCCHC6Q5VYS8 1495 aaKnown RBP10.13□□□□□ -0.79
MATR3-230ENST00000394800 EHMT2Q96KQ7 1210 aa10.09□□□□□ -0.79
MATR3-230ENST00000394800 DCAF8L2P0C7V8 631 aa10.05□□□□□ -0.8
MATR3-230ENST00000394800 PELP1Q8IZL8 1130 aaKnown RBP9.89□□□□□ -0.83
MATR3-230ENST00000394800 SUPT5HO00267 1087 aaKnown RBP9.85□□□□□ -0.83
MATR3-230ENST00000394800 DCAF1Q9Y4B6 1507 aa9.84□□□□□ -0.83
MATR3-230ENST00000394800 ERICH6Q7L0X2 663 aa9.81□□□□□ -0.84
MATR3-230ENST00000394800 ABCC9O60706 1549 aa9.74□□□□□ -0.85
MATR3-230ENST00000394800 RANGAP1P46060 587 aaPredicted RBP9.71□□□□□ -0.86
MATR3-230ENST00000394800 SCRIBQ14160 1630 aa9.64□□□□□ -0.87
MATR3-230ENST00000394800 TTBK1Q5TCY1 1321 aaPredicted RBP9.64□□□□□ -0.87
MATR3-230ENST00000394800 MYO15BQ96JP2 1530 aa9.62□□□□□ -0.87
MATR3-230ENST00000394800 NACADO15069 1562 aa9.55□□□□□ -0.88
MATR3-230ENST00000394800 CHIC1Q5VXU3 224 aa9.5□□□□□ -0.89
MATR3-230ENST00000394800 RSF1Q96T23 1441 aaPredicted RBP9.46□□□□□ -0.89
MATR3-230ENST00000394800 CECR2Q9BXF3 1484 aa9.45□□□□□ -0.9
MATR3-230ENST00000394800 RB1CC1Q8TDY2 1594 aa9.43□□□□□ -0.9
MATR3-230ENST00000394800 MROH2BQ7Z745 1585 aa9.37□□□□□ -0.91
MATR3-230ENST00000394800 UNC13AQ9UPW8 1703 aa9.37□□□□□ -0.91
MATR3-230ENST00000394800 WIZO95785 1651 aa9.31□□□□□ -0.92
MATR3-230ENST00000394800 PABPN1Q86U42 306 aaKnown RBP eCLIP9.29□□□□□ -0.922e-7■■□□□ 12.6
MATR3-230ENST00000394800 DAXXQ9UER7 740 aaPredicted RBP9.27□□□□□ -0.93
MATR3-230ENST00000394800 BICRAQ9NZM4 1560 aa9.25□□□□□ -0.93
MATR3-230ENST00000394800 LOC105371045A0A1W2PR82 267 aa9.24□□□□□ -0.93
MATR3-230ENST00000394800 BAZ1AQ9NRL2 1556 aaPredicted RBP9.23□□□□□ -0.93
MATR3-230ENST00000394800 SMARCA4P51532 1647 aa9.19□□□□□ -0.94
MATR3-230ENST00000394800 TRIM41Q8WV44 630 aa9.16□□□□□ -0.94
MATR3-230ENST00000394800 EIF5BO60841 1220 aaKnown RBP9.15□□□□□ -0.94
MATR3-230ENST00000394800 PLPPR3Q6T4P5 718 aa9.14□□□□□ -0.95
MATR3-230ENST00000394800 FAM9AQ8IZU1 332 aaPredicted RBP9.12□□□□□ -0.95
MATR3-230ENST00000394800 RTN4Q9NQC3 1192 aaKnown RBP9.11□□□□□ -0.95
MATR3-230ENST00000394800 TOP2AP11388 1531 aaKnown RBP9.11□□□□□ -0.95
MATR3-230ENST00000394800 CCDC88BA6NC98 1476 aa9.1□□□□□ -0.95
MATR3-230ENST00000394800 EIF4G1Q04637 1599 aaKnown RBP9.09□□□□□ -0.95
MATR3-230ENST00000394800 PRKCSHP14314 528 aaPredicted RBP9.08□□□□□ -0.96
MATR3-230ENST00000394800 SMARCA2P51531 1590 aa9.08□□□□□ -0.96
MATR3-230ENST00000394800 ABCC8Q09428 1581 aa9.04□□□□□ -0.96
MATR3-230ENST00000394800 PEG3Q9GZU2 1588 aa9.02□□□□□ -0.96
MATR3-230ENST00000394800 ATAD2BQ9ULI0 1458 aa9.02□□□□□ -0.97
MATR3-230ENST00000394800 PCGF6Q9BYE7 350 aa8.99□□□□□ -0.97
MATR3-230ENST00000394800 AMER1Q5JTC6 1135 aaPredicted RBP8.97□□□□□ -0.97
MATR3-230ENST00000394800 POLR3GLQ9BT43 218 aa8.96□□□□□ -0.97
MATR3-230ENST00000394800 BAZ1BQ9UIG0 1483 aaKnown RBP8.95□□□□□ -0.98
MATR3-230ENST00000394800 TULP1O00294 542 aaPredicted RBP8.95□□□□□ -0.98
MATR3-230ENST00000394800 HAP1P54257 671 aaPredicted RBP8.92□□□□□ -0.98
MATR3-230ENST00000394800 SOGA1O94964 1423 aa8.92□□□□□ -0.98
MATR3-230ENST00000394800 RUSC2Q8N2Y8 1516 aa8.91□□□□□ -0.98
MATR3-230ENST00000394800 PODXL2Q9NZ53 605 aa8.91□□□□□ -0.98
MATR3-230ENST00000394800 NCBP3Q53F19 620 aaKnown RBP8.89□□□□□ -0.99
MATR3-230ENST00000394800 WRNQ14191 1432 aaPredicted RBP eCLIP8.87□□□□□ -0.996e-9■■■■■ 30.6
MATR3-230ENST00000394800 SYNJ1O43426 1573 aa8.86□□□□□ -0.99
MATR3-230ENST00000394800 NCAPD3P42695 1498 aa8.86□□□□□ -0.99
MATR3-230ENST00000394800 HOMEZQ8IX15 550 aa8.84□□□□□ -0.99
MATR3-230ENST00000394800 PPARGC1BQ86YN6 1023 aaKnown RBP8.83□□□□□ -1
MATR3-230ENST00000394800 HRCP23327 699 aa8.83□□□□□ -1
MATR3-230ENST00000394800 TPRNQ4KMQ1 711 aa8.83□□□□□ -1
MATR3-230ENST00000394800 HMGXB3Q12766 1538 aa8.82□□□□□ -1
MATR3-230ENST00000394800 TRIM26Q12899 539 aaPredicted RBP8.82□□□□□ -1
MATR3-230ENST00000394800 CSRNP3Q8WYN3 585 aa8.82□□□□□ -1
MATR3-230ENST00000394800 C14orf37Q86TY3 774 aa8.8□□□□□ -1
MATR3-230ENST00000394800 CC2D2AQ9P2K1 1620 aa8.75□□□□□ -1.01
MATR3-230ENST00000394800 UBTFP17480 764 aaKnown RBP8.75□□□□□ -1.01
MATR3-230ENST00000394800 EEA1Q15075 1411 aa8.75□□□□□ -1.01
MATR3-230ENST00000394800 CEP162Q5TB80 1403 aa8.75□□□□□ -1.01
MATR3-230ENST00000394800 CFTRP13569 1480 aa8.75□□□□□ -1.01
MATR3-230ENST00000394800 TOP2BQ02880 1626 aa8.74□□□□□ -1.01
MATR3-230ENST00000394800 TNIKQ9UKE5 1360 aa8.73□□□□□ -1.01
MATR3-230ENST00000394800 CUX1P39880 1505 aa8.72□□□□□ -1.01
MATR3-230ENST00000394800 DNAJC5BQ9UF47 199 aa8.72□□□□□ -1.01
MATR3-230ENST00000394800 BIVM-ERCC5R4GMW8 1640 aa8.71□□□□□ -1.02
MATR3-230ENST00000394800 NPM2Q86SE8 214 aaKnown RBP8.7□□□□□ -1.02
MATR3-230ENST00000394800 GOLGA3Q08378 1498 aa8.7□□□□□ -1.02
MATR3-230ENST00000394800 RAPGEF2Q9Y4G8 1499 aa8.7□□□□□ -1.02
MATR3-230ENST00000394800 ARXQ96QS3 562 aa8.69□□□□□ -1.02
MATR3-230ENST00000394800 MYT1LQ9UL68 1186 aa8.69□□□□□ -1.02
MATR3-230ENST00000394800 CADPSQ9ULU8 1353 aa8.68□□□□□ -1.02
MATR3-230ENST00000394800 CEP164Q9UPV0 1460 aa8.67□□□□□ -1.02
MATR3-230ENST00000394800 KIF21BO75037 1637 aa8.66□□□□□ -1.02
MATR3-230ENST00000394800 BCANQ96GW7 911 aa8.66□□□□□ -1.02
MATR3-230ENST00000394800 TIMELESSQ9UNS1 1208 aa8.65□□□□□ -1.02
MATR3-230ENST00000394800 NESP48681 1621 aa8.65□□□□□ -1.03
MATR3-230ENST00000394800 PRDM2Q13029 1718 aa8.64□□□□□ -1.03
MATR3-230ENST00000394800 PRXQ9BXM0 1461 aa8.62□□□□□ -1.03
MATR3-230ENST00000394800 CLIP1P30622 1438 aa8.62□□□□□ -1.03
MATR3-230ENST00000394800 NEFLP07196 543 aa8.61□□□□□ -1.03
MATR3-230ENST00000394800 APLP2Q06481 763 aa8.61□□□□□ -1.03
MATR3-230ENST00000394800 KCNA4P22459 653 aa8.59□□□□□ -1.03
MATR3-230ENST00000394800 FANCD2Q9BXW9 1451 aa8.59□□□□□ -1.03
MATR3-230ENST00000394800 CDK11BP21127 795 aaKnown RBP8.59□□□□□ -1.03
MATR3-230ENST00000394800 KIF27Q86VH2 1401 aa8.59□□□□□ -1.03
MATR3-230ENST00000394800 CDK11AQ9UQ88 783 aaPredicted RBP8.59□□□□□ -1.03
MATR3-230ENST00000394800 FGD5Q6ZNL6 1462 aa8.59□□□□□ -1.04
MATR3-230ENST00000394800 BCL11AQ9H165 835 aa8.58□□□□□ -1.04
MATR3-230ENST00000394800 CUX2O14529 1486 aa8.58□□□□□ -1.04
MATR3-230ENST00000394800 CENPBP07199 599 aaPredicted RBP8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms