RNA–Protein interactions for RNA: ENST00000393693.6

SNCB-202, Transcript of synuclein beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNCB, Length 1,234 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCB-202ENST00000393693 NISCHQ9Y2I1 1504 aa46.67■■■■■ 5.06
SNCB-202ENST00000393693 ABCC9O60706 1549 aa42.15■■■■■ 4.34
SNCB-202ENST00000393693 CCDC180Q9P1Z9 1646 aa41.83■■■■■ 4.29
SNCB-202ENST00000393693 RB1CC1Q8TDY2 1594 aa39.94■■■■□ 3.98
SNCB-202ENST00000393693 DNAJC5BQ9UF47 199 aa39.74■■■■□ 3.95
SNCB-202ENST00000393693 NACADO15069 1562 aa39.63■■■■□ 3.93
SNCB-202ENST00000393693 DCAF8L2P0C7V8 631 aa39.6■■■■□ 3.93
SNCB-202ENST00000393693 PABPN1Q86U42 306 aaKnown RBP eCLIP39.28■■■■□ 3.88
SNCB-202ENST00000393693 UNC13AQ9UPW8 1703 aa39.03■■■■□ 3.84
SNCB-202ENST00000393693 MYO15BQ96JP2 1530 aa39■■■■□ 3.83
SNCB-202ENST00000393693 BICRAQ9NZM4 1560 aa38.84■■■■□ 3.81
SNCB-202ENST00000393693 ZCCHC6Q5VYS8 1495 aaKnown RBP38.64■■■■□ 3.78
SNCB-202ENST00000393693 DCAF1Q9Y4B6 1507 aa38.48■■■■□ 3.75
SNCB-202ENST00000393693 SCRIBQ14160 1630 aa38.23■■■■□ 3.71
SNCB-202ENST00000393693 SHROOM4Q9ULL8 1493 aa38.18■■■■□ 3.7
SNCB-202ENST00000393693 CC2D2AQ9P2K1 1620 aa38.01■■■■□ 3.67
SNCB-202ENST00000393693 CECR2Q9BXF3 1484 aa37.94■■■■□ 3.66
SNCB-202ENST00000393693 EIF4G1Q04637 1599 aaKnown RBP37.88■■■■□ 3.65
SNCB-202ENST00000393693 NCAPD3P42695 1498 aa36.63■■■■□ 3.45
SNCB-202ENST00000393693 ATAD2BQ9ULI0 1458 aa36.53■■■■□ 3.44
SNCB-202ENST00000393693 DNAJC5Q9H3Z4 198 aa36.51■■■■□ 3.44
SNCB-202ENST00000393693 SMARCA4P51532 1647 aa36.41■■■■□ 3.42
SNCB-202ENST00000393693 ERCC6Q03468 1493 aa36.35■■■■□ 3.41
SNCB-202ENST00000393693 SMARCA2P51531 1590 aa36.35■■■■□ 3.41
SNCB-202ENST00000393693 HMGXB3Q12766 1538 aa36.29■■■■□ 3.4
SNCB-202ENST00000393693 CUX2O14529 1486 aa36.28■■■■□ 3.4
SNCB-202ENST00000393693 BAZ1AQ9NRL2 1556 aaPredicted RBP36.2■■■■□ 3.39
SNCB-202ENST00000393693 NESP48681 1621 aa36.18■■■■□ 3.38
SNCB-202ENST00000393693 BAZ1BQ9UIG0 1483 aaKnown RBP36.14■■■■□ 3.38
SNCB-202ENST00000393693 PEG3Q9GZU2 1588 aa36.02■■■■□ 3.36
SNCB-202ENST00000393693 MROH2BQ7Z745 1585 aa36■■■■□ 3.35
SNCB-202ENST00000393693 LAMC3Q9Y6N6 1575 aa35.78■■■■□ 3.32
SNCB-202ENST00000393693 THOC2Q8NI27 1593 aaKnown RBP35.74■■■■□ 3.31
SNCB-202ENST00000393693 PDS5BQ9NTI5 1447 aa35.62■■■■□ 3.29
SNCB-202ENST00000393693 KIF21AQ7Z4S6 1674 aa35.61■■■■□ 3.29
SNCB-202ENST00000393693 CADPSQ9ULU8 1353 aa35.54■■■■□ 3.28
SNCB-202ENST00000393693 WIZO95785 1651 aa35.54■■■■□ 3.28
SNCB-202ENST00000393693 MRC2Q9UBG0 1479 aa35.33■■■■□ 3.25
SNCB-202ENST00000393693 WDR62O43379 1518 aa35.23■■■■□ 3.23
SNCB-202ENST00000393693 RSF1Q96T23 1441 aaPredicted RBP35.21■■■■□ 3.23
SNCB-202ENST00000393693 CEP164Q9UPV0 1460 aa35.16■■■■□ 3.22
SNCB-202ENST00000393693 FANCD2Q9BXW9 1451 aa35.13■■■■□ 3.21
SNCB-202ENST00000393693 CFTRP13569 1480 aa35.09■■■■□ 3.21
SNCB-202ENST00000393693 TOP2AP11388 1531 aaKnown RBP35.05■■■■□ 3.2
SNCB-202ENST00000393693 TRIM41Q8WV44 630 aa34.92■■■■□ 3.18
SNCB-202ENST00000393693 URB2Q14146 1524 aaKnown RBP34.86■■■■□ 3.17
SNCB-202ENST00000393693 CCDC88BA6NC98 1476 aa34.71■■■■□ 3.15
SNCB-202ENST00000393693 OSCARQ8IYS5 282 aa34.68■■■■□ 3.14
SNCB-202ENST00000393693 PRDM2Q13029 1718 aa34.59■■■■□ 3.13
SNCB-202ENST00000393693 ZNF608Q9ULD9 1512 aaPredicted RBP34.49■■■■□ 3.11
SNCB-202ENST00000393693 IFT140Q96RY7 1462 aa34.46■■■■□ 3.11
SNCB-202ENST00000393693 TOPBP1Q92547 1522 aa34.45■■■■□ 3.1
SNCB-202ENST00000393693 ABCC8Q09428 1581 aa34.29■■■■□ 3.08
SNCB-202ENST00000393693 DNMBPQ6XZF7 1577 aa34.27■■■■□ 3.08
SNCB-202ENST00000393693 EIF4G3O43432 1585 aaKnown RBP34.21■■■■□ 3.07
SNCB-202ENST00000393693 RIMBP3CA6NJZ7 1639 aa34.21■■■■□ 3.07
SNCB-202ENST00000393693 RIMBP3BA6NNM3 1639 aa34.21■■■■□ 3.07
SNCB-202ENST00000393693 RIMBP3Q9UFD9 1639 aa34.21■■■■□ 3.07
SNCB-202ENST00000393693 AQRO60306 1485 aaKnown RBP eCLIP34.17■■■■□ 3.06
SNCB-202ENST00000393693 TARBP1Q13395 1621 aaKnown RBP34.13■■■■□ 3.05
SNCB-202ENST00000393693 ARHGEF11O15085 1522 aa34.09■■■■□ 3.05
SNCB-202ENST00000393693 POLA1P09884 1462 aaPredicted RBP34.09■■■■□ 3.05
SNCB-202ENST00000393693 RAD54L2Q9Y4B4 1467 aa34.02■■■■□ 3.04
SNCB-202ENST00000393693 FBLN2P98095 1184 aa34■■■■□ 3.03
SNCB-202ENST00000393693 CHD1O14646 1710 aa33.97■■■■□ 3.03
SNCB-202ENST00000393693 SOGA1O94964 1423 aa33.96■■■■□ 3.03
SNCB-202ENST00000393693 TDRD9Q8NDG6 1382 aaKnown RBP33.95■■■■□ 3.02
SNCB-202ENST00000393693 CYB5RLQ6IPT4 315 aa33.93■■■■□ 3.02
SNCB-202ENST00000393693 FGD5Q6ZNL6 1462 aa33.87■■■■□ 3.01
SNCB-202ENST00000393693 CUX1P39880 1505 aa33.82■■■■□ 3
SNCB-202ENST00000393693 SNAPC4Q5SXM2 1469 aa33.78■■■■□ 3
SNCB-202ENST00000393693 ARAP1Q96P48 1450 aa33.77■■■■□ 3
SNCB-202ENST00000393693 CHMP7Q8WUX9 453 aaPredicted RBP33.69■■■□□ 2.98
SNCB-202ENST00000393693 WDR97A6NE52 1622 aa33.68■■■□□ 2.98
SNCB-202ENST00000393693 SUPT5HO00267 1087 aaKnown RBP33.64■■■□□ 2.98
SNCB-202ENST00000393693 GRIN2BQ13224 1484 aa33.63■■■□□ 2.97
SNCB-202ENST00000393693 MAGI1Q96QZ7 1491 aaPredicted RBP33.62■■■□□ 2.97
SNCB-202ENST00000393693 CLASP1Q7Z460 1538 aa33.6■■■□□ 2.97
SNCB-202ENST00000393693 TRHP20396 242 aaPredicted RBP33.59■■■□□ 2.97
SNCB-202ENST00000393693 SYNJ2O15056 1496 aa33.54■■■□□ 2.96
SNCB-202ENST00000393693 SYNJ1O43426 1573 aa33.54■■■□□ 2.96
SNCB-202ENST00000393693 GAPVD1Q14C86 1478 aa33.51■■■□□ 2.96
SNCB-202ENST00000393693 PBRM1Q86U86 1689 aa33.45■■■□□ 2.94
SNCB-202ENST00000393693 ABCA10Q8WWZ4 1543 aa33.44■■■□□ 2.94
SNCB-202ENST00000393693 ABCA5Q8WWZ7 1642 aa33.39■■■□□ 2.93
SNCB-202ENST00000393693 WRNQ14191 1432 aaPredicted RBP eCLIP33.28■■■□□ 2.92
SNCB-202ENST00000393693 GRIN2AQ12879 1464 aa33.21■■■□□ 2.91
SNCB-202ENST00000393693 TOP2BQ02880 1626 aa33.19■■■□□ 2.9
SNCB-202ENST00000393693 BIVM-ERCC5R4GMW8 1640 aa33.17■■■□□ 2.9
SNCB-202ENST00000393693 ADAMTS12P58397 1594 aa33.15■■■□□ 2.9
SNCB-202ENST00000393693 ERCC6L2Q5T890 1561 aa33.14■■■□□ 2.9
SNCB-202ENST00000393693 CEP170Q5SW79 1584 aa33.11■■■□□ 2.89
SNCB-202ENST00000393693 NUP160Q12769 1436 aa33.11■■■□□ 2.89
SNCB-202ENST00000393693 FHAD1B1AJZ9 1412 aa33.08■■■□□ 2.89
SNCB-202ENST00000393693 ERICH3Q5RHP9 1530 aa32.99■■■□□ 2.87
SNCB-202ENST00000393693 SHROOM2Q13796 1616 aa32.93■■■□□ 2.86
SNCB-202ENST00000393693 PRG4Q92954 1404 aaPredicted RBP32.84■■■□□ 2.85
SNCB-202ENST00000393693 JPH4Q96JJ6 628 aa32.82■■■□□ 2.84
SNCB-202ENST00000393693 RUSC2Q8N2Y8 1516 aa32.68■■■□□ 2.82
SNCB-202ENST00000393693 AEBP2Q6ZN18 517 aaPredicted RBP32.68■■■□□ 2.82
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms