RNA–Protein interactions for RNA: ENST00000381254.6

GEN1-202, Transcript of GEN1, Holliday junction 5' flap endonuclease, humanhuman

APPRIS P1 TSL 5 BASIC

Gene GEN1, Length 6,367 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GEN1-202ENST00000381254 NISCHQ9Y2I1 1504 aa10.57□□□□□ -0.72
GEN1-202ENST00000381254 DCAF8L2P0C7V8 631 aa10.42□□□□□ -0.74
GEN1-202ENST00000381254 ABCC9O60706 1549 aa9.98□□□□□ -0.81
GEN1-202ENST00000381254 PABPN1Q86U42 306 aaKnown RBP eCLIP9.52□□□□□ -0.89
GEN1-202ENST00000381254 AEBP2Q6ZN18 517 aaPredicted RBP9.36□□□□□ -0.91
GEN1-202ENST00000381254 FAM9AQ8IZU1 332 aaPredicted RBP9.35□□□□□ -0.91
GEN1-202ENST00000381254 RB1CC1Q8TDY2 1594 aa9.35□□□□□ -0.91
GEN1-202ENST00000381254 TRIM41Q8WV44 630 aa9.26□□□□□ -0.93
GEN1-202ENST00000381254 CCDC180Q9P1Z9 1646 aa9.22□□□□□ -0.93
GEN1-202ENST00000381254 ERCC6Q03468 1493 aa9.19□□□□□ -0.94
GEN1-202ENST00000381254 TRHP20396 242 aaPredicted RBP9.11□□□□□ -0.95
GEN1-202ENST00000381254 NACADO15069 1562 aa9.09□□□□□ -0.95
GEN1-202ENST00000381254 CECR2Q9BXF3 1484 aa9.03□□□□□ -0.96
GEN1-202ENST00000381254 FBLN2P98095 1184 aa8.96□□□□□ -0.98
GEN1-202ENST00000381254 DNAJC5BQ9UF47 199 aa8.93□□□□□ -0.98
GEN1-202ENST00000381254 NPM1P06748 294 aaKnown RBP eCLIP8.92□□□□□ -0.98
GEN1-202ENST00000381254 DNAJC5Q9H3Z4 198 aa8.89□□□□□ -0.99
GEN1-202ENST00000381254 SCRIBQ14160 1630 aa8.87□□□□□ -0.99
GEN1-202ENST00000381254 SHROOM4Q9ULL8 1493 aa8.8□□□□□ -1
GEN1-202ENST00000381254 OSCARQ8IYS5 282 aa8.8□□□□□ -1
GEN1-202ENST00000381254 PELP1Q8IZL8 1130 aaKnown RBP8.74□□□□□ -1.01
GEN1-202ENST00000381254 MYT1LQ9UL68 1186 aa8.73□□□□□ -1.01
GEN1-202ENST00000381254 PDS5BQ9NTI5 1447 aa8.71□□□□□ -1.01
GEN1-202ENST00000381254 TTBK1Q5TCY1 1321 aaPredicted RBP8.68□□□□□ -1.02
GEN1-202ENST00000381254 CHMP7Q8WUX9 453 aaPredicted RBP8.67□□□□□ -1.02
GEN1-202ENST00000381254 CUX2O14529 1486 aa8.64□□□□□ -1.03
GEN1-202ENST00000381254 ZEB1P37275 1124 aaPredicted RBP8.64□□□□□ -1.03
GEN1-202ENST00000381254 CYB5RLQ6IPT4 315 aa8.61□□□□□ -1.03
GEN1-202ENST00000381254 CC2D2AQ9P2K1 1620 aa8.61□□□□□ -1.03
GEN1-202ENST00000381254 ESF1Q9H501 851 aaKnown RBP8.6□□□□□ -1.03
GEN1-202ENST00000381254 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.59□□□□□ -1.03
GEN1-202ENST00000381254 HNRNPUL2Q1KMD3 747 aaKnown RBP8.59□□□□□ -1.03
GEN1-202ENST00000381254 BAZ1BQ9UIG0 1483 aaKnown RBP8.58□□□□□ -1.04
GEN1-202ENST00000381254 MYT1Q01538 1121 aa8.55□□□□□ -1.04
GEN1-202ENST00000381254 MYO15BQ96JP2 1530 aa8.53□□□□□ -1.04
GEN1-202ENST00000381254 EIF4G1Q04637 1599 aaKnown RBP8.53□□□□□ -1.04
GEN1-202ENST00000381254 SUPT5HO00267 1087 aaKnown RBP8.52□□□□□ -1.05
GEN1-202ENST00000381254 SMARCA2P51531 1590 aa8.5□□□□□ -1.05
GEN1-202ENST00000381254 PLPPR3Q6T4P5 718 aa8.48□□□□□ -1.05
GEN1-202ENST00000381254 ARID4BQ4LE39 1312 aaPredicted RBP8.46□□□□□ -1.05
GEN1-202ENST00000381254 ATP1B4Q9UN42 357 aaPredicted RBP8.46□□□□□ -1.06
GEN1-202ENST00000381254 APLP2Q06481 763 aa8.45□□□□□ -1.06
GEN1-202ENST00000381254 ZCCHC6Q5VYS8 1495 aaKnown RBP8.42□□□□□ -1.06
GEN1-202ENST00000381254 CEP164Q9UPV0 1460 aa8.41□□□□□ -1.06
GEN1-202ENST00000381254 FOXD1Q16676 465 aa8.4□□□□□ -1.07
GEN1-202ENST00000381254 DCAF1Q9Y4B6 1507 aa8.38□□□□□ -1.07
GEN1-202ENST00000381254 MRC2Q9UBG0 1479 aa8.35□□□□□ -1.07
GEN1-202ENST00000381254 CENPBP07199 599 aaPredicted RBP8.35□□□□□ -1.07
GEN1-202ENST00000381254 CADPSQ9ULU8 1353 aa8.34□□□□□ -1.07
GEN1-202ENST00000381254 SCAF1Q9H7N4 1312 aaKnown RBP8.33□□□□□ -1.08
GEN1-202ENST00000381254 CCER1Q8TC90 406 aaPredicted RBP8.3□□□□□ -1.08
GEN1-202ENST00000381254 PHF23Q9BUL5 403 aaPredicted RBP8.3□□□□□ -1.08
GEN1-202ENST00000381254 BAZ1AQ9NRL2 1556 aaPredicted RBP8.3□□□□□ -1.08
GEN1-202ENST00000381254 NCAPD3P42695 1498 aa8.28□□□□□ -1.08
GEN1-202ENST00000381254 FAM69CQ0P6D2 419 aa8.28□□□□□ -1.08
GEN1-202ENST00000381254 RANGAP1P46060 587 aaPredicted RBP8.27□□□□□ -1.09
GEN1-202ENST00000381254 ABCC8Q09428 1581 aa8.27□□□□□ -1.09
GEN1-202ENST00000381254 CHIC1Q5VXU3 224 aa8.26□□□□□ -1.09
GEN1-202ENST00000381254 ATAD2BQ9ULI0 1458 aa8.25□□□□□ -1.09
GEN1-202ENST00000381254 BCANQ96GW7 911 aa8.24□□□□□ -1.09
GEN1-202ENST00000381254 FANCD2Q9BXW9 1451 aa8.22□□□□□ -1.09
GEN1-202ENST00000381254 DCAF8L1A6NGE4 600 aa8.22□□□□□ -1.09
GEN1-202ENST00000381254 LAMC3Q9Y6N6 1575 aa8.21□□□□□ -1.1
GEN1-202ENST00000381254 BICRAQ9NZM4 1560 aa8.2□□□□□ -1.1
GEN1-202ENST00000381254 CDK11AQ9UQ88 783 aaPredicted RBP8.2□□□□□ -1.1
GEN1-202ENST00000381254 IFT140Q96RY7 1462 aa8.19□□□□□ -1.1
GEN1-202ENST00000381254 KCNH8Q96L42 1107 aa8.19□□□□□ -1.1
GEN1-202ENST00000381254 DMRT2Q9Y5R5 561 aa8.15□□□□□ -1.1
GEN1-202ENST00000381254 STAG3Q9UJ98 1225 aa8.15□□□□□ -1.11
GEN1-202ENST00000381254 CARMIL2Q6F5E8 1435 aa8.15□□□□□ -1.11
GEN1-202ENST00000381254 NESP48681 1621 aa8.14□□□□□ -1.11
GEN1-202ENST00000381254 SOGA1O94964 1423 aa8.14□□□□□ -1.11
GEN1-202ENST00000381254 HMGXB3Q12766 1538 aa8.14□□□□□ -1.11
GEN1-202ENST00000381254 TRIM26Q12899 539 aaPredicted RBP8.14□□□□□ -1.11
GEN1-202ENST00000381254 UBTFP17480 764 aaKnown RBP8.11□□□□□ -1.11
GEN1-202ENST00000381254 MLECQ14165 292 aa8.08□□□□□ -1.12
GEN1-202ENST00000381254 EHMT2Q96KQ7 1210 aa8.07□□□□□ -1.12
GEN1-202ENST00000381254 SMARCA4P51532 1647 aa8.07□□□□□ -1.12
GEN1-202ENST00000381254 TDRD9Q8NDG6 1382 aaKnown RBP8.07□□□□□ -1.12
GEN1-202ENST00000381254 C14orf37Q86TY3 774 aa8.06□□□□□ -1.12
GEN1-202ENST00000381254 ARID3CA6NKF2 412 aa8.06□□□□□ -1.12
GEN1-202ENST00000381254 UNC13AQ9UPW8 1703 aa8.06□□□□□ -1.12
GEN1-202ENST00000381254 SYNJ1O43426 1573 aa8.05□□□□□ -1.12
GEN1-202ENST00000381254 MEX3CQ5U5Q3 659 aaKnown RBP8.05□□□□□ -1.12
GEN1-202ENST00000381254 PLEKHD1A6NEE1 506 aa8.04□□□□□ -1.12
GEN1-202ENST00000381254 HRCP23327 699 aa8.04□□□□□ -1.12
GEN1-202ENST00000381254 CLSPNQ9HAW4 1339 aa8.04□□□□□ -1.12
GEN1-202ENST00000381254 PCGF6Q9BYE7 350 aa8.04□□□□□ -1.12
GEN1-202ENST00000381254 NEFLP07196 543 aa8.04□□□□□ -1.12
GEN1-202ENST00000381254 POGZQ7Z3K3 1410 aa8.03□□□□□ -1.12
GEN1-202ENST00000381254 JPH4Q96JJ6 628 aa8.03□□□□□ -1.12
GEN1-202ENST00000381254 SENP3Q9H4L4 574 aaPredicted RBP8.03□□□□□ -1.12
GEN1-202ENST00000381254 DISP3Q9P2K9 1392 aa8.02□□□□□ -1.13
GEN1-202ENST00000381254 ACIN1Q9UKV3 1341 aaKnown RBP8.01□□□□□ -1.13
GEN1-202ENST00000381254 WRNQ14191 1432 aaPredicted RBP eCLIP8.01□□□□□ -1.13
GEN1-202ENST00000381254 RSF1Q96T23 1441 aaPredicted RBP8□□□□□ -1.13
GEN1-202ENST00000381254 MROH2BQ7Z745 1585 aa7.99□□□□□ -1.13
GEN1-202ENST00000381254 GRIN2BQ13224 1484 aa7.99□□□□□ -1.13
GEN1-202ENST00000381254 PTPRGP23470 1445 aa7.97□□□□□ -1.13
GEN1-202ENST00000381254 AQRO60306 1485 aaKnown RBP eCLIP7.97□□□□□ -1.133e-6■■■■■ 29.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms