RNA–Protein interactions for RNA: ENST00000379018.7

PDLIM4-202, Transcript of PDZ and LIM domain 4, humanhuman

TSL 1 (best) BASIC

Gene PDLIM4, Length 1,006 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-202ENST00000379018 NISCHQ9Y2I1 1504 aa44.91■■■■■ 4.78
PDLIM4-202ENST00000379018 ABCC9O60706 1549 aa40.88■■■■■ 4.13
PDLIM4-202ENST00000379018 CCDC180Q9P1Z9 1646 aa40.42■■■■■ 4.06
PDLIM4-202ENST00000379018 RB1CC1Q8TDY2 1594 aa38.66■■■■□ 3.78
PDLIM4-202ENST00000379018 DNAJC5BQ9UF47 199 aa38.56■■■■□ 3.76
PDLIM4-202ENST00000379018 NACADO15069 1562 aa38.27■■■■□ 3.72
PDLIM4-202ENST00000379018 DCAF8L2P0C7V8 631 aa38.27■■■■□ 3.72
PDLIM4-202ENST00000379018 PABPN1Q86U42 306 aaKnown RBP eCLIP38.03■■■■□ 3.68
PDLIM4-202ENST00000379018 UNC13AQ9UPW8 1703 aa37.84■■■■□ 3.65
PDLIM4-202ENST00000379018 MYO15BQ96JP2 1530 aa37.53■■■■□ 3.6
PDLIM4-202ENST00000379018 BICRAQ9NZM4 1560 aa37.53■■■■□ 3.6
PDLIM4-202ENST00000379018 ZCCHC6Q5VYS8 1495 aaKnown RBP37.15■■■■□ 3.54
PDLIM4-202ENST00000379018 SCRIBQ14160 1630 aa36.97■■■■□ 3.51
PDLIM4-202ENST00000379018 DCAF1Q9Y4B6 1507 aa36.96■■■■□ 3.51
PDLIM4-202ENST00000379018 SHROOM4Q9ULL8 1493 aa36.88■■■■□ 3.49
PDLIM4-202ENST00000379018 CC2D2AQ9P2K1 1620 aa36.85■■■■□ 3.49
PDLIM4-202ENST00000379018 CECR2Q9BXF3 1484 aa36.8■■■■□ 3.48
PDLIM4-202ENST00000379018 EIF4G1Q04637 1599 aaKnown RBP36.67■■■■□ 3.46
PDLIM4-202ENST00000379018 DNAJC5Q9H3Z4 198 aa35.58■■■■□ 3.29
PDLIM4-202ENST00000379018 ERCC6Q03468 1493 aa35.33■■■■□ 3.25
PDLIM4-202ENST00000379018 NCAPD3P42695 1498 aa35.31■■■■□ 3.24
PDLIM4-202ENST00000379018 CUX2O14529 1486 aa35.23■■■■□ 3.23
PDLIM4-202ENST00000379018 ATAD2BQ9ULI0 1458 aa35.22■■■■□ 3.23
PDLIM4-202ENST00000379018 SMARCA4P51532 1647 aa35.14■■■■□ 3.22
PDLIM4-202ENST00000379018 SMARCA2P51531 1590 aa35.11■■■■□ 3.21
PDLIM4-202ENST00000379018 HMGXB3Q12766 1538 aa35.06■■■■□ 3.2
PDLIM4-202ENST00000379018 NESP48681 1621 aa35.02■■■■□ 3.2
PDLIM4-202ENST00000379018 BAZ1BQ9UIG0 1483 aaKnown RBP34.92■■■■□ 3.18
PDLIM4-202ENST00000379018 BAZ1AQ9NRL2 1556 aaPredicted RBP34.88■■■■□ 3.17
PDLIM4-202ENST00000379018 PEG3Q9GZU2 1588 aa34.69■■■■□ 3.14
PDLIM4-202ENST00000379018 THOC2Q8NI27 1593 aaKnown RBP34.66■■■■□ 3.14
PDLIM4-202ENST00000379018 MROH2BQ7Z745 1585 aa34.66■■■■□ 3.14
PDLIM4-202ENST00000379018 LAMC3Q9Y6N6 1575 aa34.61■■■■□ 3.13
PDLIM4-202ENST00000379018 KIF21AQ7Z4S6 1674 aa34.55■■■■□ 3.12
PDLIM4-202ENST00000379018 PDS5BQ9NTI5 1447 aa34.44■■■■□ 3.1
PDLIM4-202ENST00000379018 CADPSQ9ULU8 1353 aa34.28■■■■□ 3.08
PDLIM4-202ENST00000379018 WIZO95785 1651 aa34.26■■■■□ 3.08
PDLIM4-202ENST00000379018 MRC2Q9UBG0 1479 aa34.2■■■■□ 3.06
PDLIM4-202ENST00000379018 TRIM41Q8WV44 630 aa34.1■■■■□ 3.05
PDLIM4-202ENST00000379018 WDR62O43379 1518 aa34.09■■■■□ 3.05
PDLIM4-202ENST00000379018 CEP164Q9UPV0 1460 aa34.01■■■■□ 3.04
PDLIM4-202ENST00000379018 FANCD2Q9BXW9 1451 aa33.95■■■■□ 3.02
PDLIM4-202ENST00000379018 CFTRP13569 1480 aa33.8■■■■□ 3
PDLIM4-202ENST00000379018 RSF1Q96T23 1441 aaPredicted RBP33.79■■■■□ 3
PDLIM4-202ENST00000379018 TOP2AP11388 1531 aaKnown RBP33.74■■■□□ 2.99
PDLIM4-202ENST00000379018 URB2Q14146 1524 aaKnown RBP33.68■■■□□ 2.98
PDLIM4-202ENST00000379018 OSCARQ8IYS5 282 aa33.62■■■□□ 2.97
PDLIM4-202ENST00000379018 PRDM2Q13029 1718 aa33.49■■■□□ 2.95
PDLIM4-202ENST00000379018 CCDC88BA6NC98 1476 aa33.37■■■□□ 2.93
PDLIM4-202ENST00000379018 ZNF608Q9ULD9 1512 aaPredicted RBP33.35■■■□□ 2.93
PDLIM4-202ENST00000379018 IFT140Q96RY7 1462 aa33.31■■■□□ 2.92
PDLIM4-202ENST00000379018 RIMBP3CA6NJZ7 1639 aa33.26■■■□□ 2.91
PDLIM4-202ENST00000379018 RIMBP3BA6NNM3 1639 aa33.26■■■□□ 2.91
PDLIM4-202ENST00000379018 RIMBP3Q9UFD9 1639 aa33.26■■■□□ 2.91
PDLIM4-202ENST00000379018 TOPBP1Q92547 1522 aa33.26■■■□□ 2.91
PDLIM4-202ENST00000379018 EIF4G3O43432 1585 aaKnown RBP33.14■■■□□ 2.9
PDLIM4-202ENST00000379018 DNMBPQ6XZF7 1577 aa33.1■■■□□ 2.89
PDLIM4-202ENST00000379018 ARHGEF11O15085 1522 aa33.1■■■□□ 2.89
PDLIM4-202ENST00000379018 ABCC8Q09428 1581 aa33.08■■■□□ 2.89
PDLIM4-202ENST00000379018 AQRO60306 1485 aaKnown RBP eCLIP33.01■■■□□ 2.884e-6■■■■■ 31
PDLIM4-202ENST00000379018 CHD1O14646 1710 aa32.99■■■□□ 2.87
PDLIM4-202ENST00000379018 TARBP1Q13395 1621 aaKnown RBP32.95■■■□□ 2.87
PDLIM4-202ENST00000379018 FBLN2P98095 1184 aa32.95■■■□□ 2.87
PDLIM4-202ENST00000379018 CYB5RLQ6IPT4 315 aa32.93■■■□□ 2.86
PDLIM4-202ENST00000379018 POLA1P09884 1462 aaPredicted RBP32.89■■■□□ 2.86
PDLIM4-202ENST00000379018 RAD54L2Q9Y4B4 1467 aa32.84■■■□□ 2.85
PDLIM4-202ENST00000379018 ARAP1Q96P48 1450 aa32.76■■■□□ 2.84
PDLIM4-202ENST00000379018 TDRD9Q8NDG6 1382 aaKnown RBP32.76■■■□□ 2.83
PDLIM4-202ENST00000379018 SOGA1O94964 1423 aa32.74■■■□□ 2.83
PDLIM4-202ENST00000379018 TRHP20396 242 aaPredicted RBP32.73■■■□□ 2.83
PDLIM4-202ENST00000379018 SNAPC4Q5SXM2 1469 aa32.67■■■□□ 2.82
PDLIM4-202ENST00000379018 FGD5Q6ZNL6 1462 aa32.67■■■□□ 2.82
PDLIM4-202ENST00000379018 CUX1P39880 1505 aa32.58■■■□□ 2.81
PDLIM4-202ENST00000379018 CHMP7Q8WUX9 453 aaPredicted RBP32.57■■■□□ 2.8
PDLIM4-202ENST00000379018 WDR97A6NE52 1622 aa32.51■■■□□ 2.8
PDLIM4-202ENST00000379018 CLASP1Q7Z460 1538 aa32.51■■■□□ 2.79
PDLIM4-202ENST00000379018 SYNJ1O43426 1573 aa32.5■■■□□ 2.79
PDLIM4-202ENST00000379018 MAGI1Q96QZ7 1491 aaPredicted RBP32.49■■■□□ 2.79
PDLIM4-202ENST00000379018 GRIN2BQ13224 1484 aa32.48■■■□□ 2.79
PDLIM4-202ENST00000379018 SYNJ2O15056 1496 aa32.41■■■□□ 2.78
PDLIM4-202ENST00000379018 PBRM1Q86U86 1689 aa32.39■■■□□ 2.78
PDLIM4-202ENST00000379018 GAPVD1Q14C86 1478 aa32.35■■■□□ 2.77
PDLIM4-202ENST00000379018 SUPT5HO00267 1087 aaKnown RBP32.24■■■□□ 2.75
PDLIM4-202ENST00000379018 ABCA10Q8WWZ4 1543 aa32.22■■■□□ 2.75
PDLIM4-202ENST00000379018 ABCA5Q8WWZ7 1642 aa32.22■■■□□ 2.75
PDLIM4-202ENST00000379018 GRIN2AQ12879 1464 aa32.07■■■□□ 2.72
PDLIM4-202ENST00000379018 ERCC6L2Q5T890 1561 aa32.07■■■□□ 2.72
PDLIM4-202ENST00000379018 WRNQ14191 1432 aaPredicted RBP eCLIP32.05■■■□□ 2.72
PDLIM4-202ENST00000379018 ADAMTS12P58397 1594 aa32.04■■■□□ 2.72
PDLIM4-202ENST00000379018 AEBP2Q6ZN18 517 aaPredicted RBP32.01■■■□□ 2.71
PDLIM4-202ENST00000379018 CEP170Q5SW79 1584 aa31.99■■■□□ 2.71
PDLIM4-202ENST00000379018 BIVM-ERCC5R4GMW8 1640 aa31.94■■■□□ 2.7
PDLIM4-202ENST00000379018 TOP2BQ02880 1626 aa31.93■■■□□ 2.7
PDLIM4-202ENST00000379018 NUP160Q12769 1436 aa31.93■■■□□ 2.7
PDLIM4-202ENST00000379018 FHAD1B1AJZ9 1412 aa31.89■■■□□ 2.7
PDLIM4-202ENST00000379018 SHROOM2Q13796 1616 aa31.82■■■□□ 2.69
PDLIM4-202ENST00000379018 ERICH3Q5RHP9 1530 aa31.8■■■□□ 2.68
PDLIM4-202ENST00000379018 PRG4Q92954 1404 aaPredicted RBP31.73■■■□□ 2.67
PDLIM4-202ENST00000379018 JPH4Q96JJ6 628 aa31.64■■■□□ 2.66
PDLIM4-202ENST00000379018 KIF13AQ9H1H9 1805 aa31.63■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms