RNA–Protein interactions for RNA: ENST00000377808.8

SMARCE1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,307 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-203ENST00000377808 NISCHQ9Y2I1 1504 aa28.24■■■□□ 2.11
SMARCE1-203ENST00000377808 CCDC180Q9P1Z9 1646 aa25.16■■□□□ 1.62
SMARCE1-203ENST00000377808 ABCC9O60706 1549 aa24.89■■□□□ 1.58
SMARCE1-203ENST00000377808 DCAF8L2P0C7V8 631 aa23.84■■□□□ 1.41
SMARCE1-203ENST00000377808 RB1CC1Q8TDY2 1594 aa23.81■■□□□ 1.4
SMARCE1-203ENST00000377808 NACADO15069 1562 aa23.71■■□□□ 1.39
SMARCE1-203ENST00000377808 ZCCHC6Q5VYS8 1495 aaKnown RBP23.49■■□□□ 1.35
SMARCE1-203ENST00000377808 MYO15BQ96JP2 1530 aa23.44■■□□□ 1.34
SMARCE1-203ENST00000377808 DCAF1Q9Y4B6 1507 aa23.29■■□□□ 1.32
SMARCE1-203ENST00000377808 PABPN1Q86U42 306 aaKnown RBP eCLIP23.25■■□□□ 1.31
SMARCE1-203ENST00000377808 UNC13AQ9UPW8 1703 aa23.24■■□□□ 1.31
SMARCE1-203ENST00000377808 SCRIBQ14160 1630 aa23.05■■□□□ 1.28
SMARCE1-203ENST00000377808 BICRAQ9NZM4 1560 aa23.04■■□□□ 1.28
SMARCE1-203ENST00000377808 DNAJC5BQ9UF47 199 aa22.94■■□□□ 1.26
SMARCE1-203ENST00000377808 SHROOM4Q9ULL8 1493 aa22.77■■□□□ 1.24
SMARCE1-203ENST00000377808 EIF4G1Q04637 1599 aaKnown RBP22.5■■□□□ 1.19
SMARCE1-203ENST00000377808 CC2D2AQ9P2K1 1620 aa22.46■■□□□ 1.19
SMARCE1-203ENST00000377808 CECR2Q9BXF3 1484 aa22.36■■□□□ 1.17
SMARCE1-203ENST00000377808 SMARCA4P51532 1647 aa21.96■■□□□ 1.11
SMARCE1-203ENST00000377808 BAZ1AQ9NRL2 1556 aaPredicted RBP21.91■■□□□ 1.1
SMARCE1-203ENST00000377808 ATAD2BQ9ULI0 1458 aa21.88■■□□□ 1.09
SMARCE1-203ENST00000377808 NCAPD3P42695 1498 aa21.86■■□□□ 1.09
SMARCE1-203ENST00000377808 SMARCA2P51531 1590 aa21.85■■□□□ 1.09
SMARCE1-203ENST00000377808 MROH2BQ7Z745 1585 aa21.78■■□□□ 1.08
SMARCE1-203ENST00000377808 HMGXB3Q12766 1538 aa21.75■■□□□ 1.07
SMARCE1-203ENST00000377808 BAZ1BQ9UIG0 1483 aaKnown RBP21.74■■□□□ 1.07
SMARCE1-203ENST00000377808 PEG3Q9GZU2 1588 aa21.69■■□□□ 1.06
SMARCE1-203ENST00000377808 WIZO95785 1651 aa21.56■■□□□ 1.04
SMARCE1-203ENST00000377808 ERCC6Q03468 1493 aa21.5■■□□□ 1.03
SMARCE1-203ENST00000377808 NESP48681 1621 aa21.46■■□□□ 1.03
SMARCE1-203ENST00000377808 RSF1Q96T23 1441 aaPredicted RBP21.46■■□□□ 1.03
SMARCE1-203ENST00000377808 LAMC3Q9Y6N6 1575 aa21.34■■□□□ 1.01
SMARCE1-203ENST00000377808 TOP2AP11388 1531 aaKnown RBP21.3■■□□□ 1
SMARCE1-203ENST00000377808 CADPSQ9ULU8 1353 aa21.25■□□□□ 0.99
SMARCE1-203ENST00000377808 CUX2O14529 1486 aa21.24■□□□□ 0.99
SMARCE1-203ENST00000377808 PDS5BQ9NTI5 1447 aa21.23■□□□□ 0.99
SMARCE1-203ENST00000377808 KIF21AQ7Z4S6 1674 aa21.2■□□□□ 0.98
SMARCE1-203ENST00000377808 THOC2Q8NI27 1593 aaKnown RBP21.14■□□□□ 0.97
SMARCE1-203ENST00000377808 CFTRP13569 1480 aa21.07■□□□□ 0.96
SMARCE1-203ENST00000377808 CCDC88BA6NC98 1476 aa21.05■□□□□ 0.96
SMARCE1-203ENST00000377808 FANCD2Q9BXW9 1451 aa21.04■□□□□ 0.96
SMARCE1-203ENST00000377808 CEP164Q9UPV0 1460 aa21.04■□□□□ 0.96
SMARCE1-203ENST00000377808 MRC2Q9UBG0 1479 aa21.03■□□□□ 0.96
SMARCE1-203ENST00000377808 WDR62O43379 1518 aa20.94■□□□□ 0.94
SMARCE1-203ENST00000377808 SUPT5HO00267 1087 aaKnown RBP20.91■□□□□ 0.94
SMARCE1-203ENST00000377808 PRDM2Q13029 1718 aa20.9■□□□□ 0.94
SMARCE1-203ENST00000377808 URB2Q14146 1524 aaKnown RBP20.82■□□□□ 0.92
SMARCE1-203ENST00000377808 DNAJC5Q9H3Z4 198 aa20.79■□□□□ 0.92
SMARCE1-203ENST00000377808 TOPBP1Q92547 1522 aa20.67■□□□□ 0.9
SMARCE1-203ENST00000377808 ABCC8Q09428 1581 aa20.63■□□□□ 0.89
SMARCE1-203ENST00000377808 DNMBPQ6XZF7 1577 aa20.63■□□□□ 0.89
SMARCE1-203ENST00000377808 IFT140Q96RY7 1462 aa20.59■□□□□ 0.89
SMARCE1-203ENST00000377808 ZNF608Q9ULD9 1512 aaPredicted RBP20.52■□□□□ 0.88
SMARCE1-203ENST00000377808 POLA1P09884 1462 aaPredicted RBP20.48■□□□□ 0.87
SMARCE1-203ENST00000377808 CUX1P39880 1505 aa20.44■□□□□ 0.86
SMARCE1-203ENST00000377808 EIF4G3O43432 1585 aaKnown RBP20.44■□□□□ 0.86
SMARCE1-203ENST00000377808 FGD5Q6ZNL6 1462 aa20.43■□□□□ 0.86
SMARCE1-203ENST00000377808 RAD54L2Q9Y4B4 1467 aa20.43■□□□□ 0.86
SMARCE1-203ENST00000377808 TARBP1Q13395 1621 aaKnown RBP20.42■□□□□ 0.86
SMARCE1-203ENST00000377808 SOGA1O94964 1423 aa20.41■□□□□ 0.86
SMARCE1-203ENST00000377808 AEBP2Q6ZN18 517 aaPredicted RBP20.41■□□□□ 0.86
SMARCE1-203ENST00000377808 AQRO60306 1485 aaKnown RBP eCLIP20.4■□□□□ 0.865e-8■■■□□ 18.8
SMARCE1-203ENST00000377808 OSCARQ8IYS5 282 aa20.36■□□□□ 0.85
SMARCE1-203ENST00000377808 TDRD9Q8NDG6 1382 aaKnown RBP20.34■□□□□ 0.85
SMARCE1-203ENST00000377808 FBLN2P98095 1184 aa20.27■□□□□ 0.84
SMARCE1-203ENST00000377808 WRNQ14191 1432 aaPredicted RBP eCLIP20.27■□□□□ 0.84
SMARCE1-203ENST00000377808 WDR97A6NE52 1622 aa20.23■□□□□ 0.83
SMARCE1-203ENST00000377808 SYNJ1O43426 1573 aa20.22■□□□□ 0.83
SMARCE1-203ENST00000377808 CHD1O14646 1710 aa20.21■□□□□ 0.83
SMARCE1-203ENST00000377808 SNAPC4Q5SXM2 1469 aa20.21■□□□□ 0.83
SMARCE1-203ENST00000377808 TOP2BQ02880 1626 aa20.21■□□□□ 0.83
SMARCE1-203ENST00000377808 BIVM-ERCC5R4GMW8 1640 aa20.2■□□□□ 0.82
SMARCE1-203ENST00000377808 ABCA10Q8WWZ4 1543 aa20.19■□□□□ 0.82
SMARCE1-203ENST00000377808 GRIN2BQ13224 1484 aa20.18■□□□□ 0.82
SMARCE1-203ENST00000377808 TRIM41Q8WV44 630 aa20.18■□□□□ 0.82
SMARCE1-203ENST00000377808 GAPVD1Q14C86 1478 aa20.16■□□□□ 0.82
SMARCE1-203ENST00000377808 PBRM1Q86U86 1689 aa20.14■□□□□ 0.82
SMARCE1-203ENST00000377808 CHMP7Q8WUX9 453 aaPredicted RBP20.14■□□□□ 0.81
SMARCE1-203ENST00000377808 MAGI1Q96QZ7 1491 aaPredicted RBP20.14■□□□□ 0.81
SMARCE1-203ENST00000377808 ABCA5Q8WWZ7 1642 aa20.12■□□□□ 0.81
SMARCE1-203ENST00000377808 SYNJ2O15056 1496 aa20.07■□□□□ 0.8
SMARCE1-203ENST00000377808 RIMBP3CA6NJZ7 1639 aa20.06■□□□□ 0.8
SMARCE1-203ENST00000377808 RIMBP3BA6NNM3 1639 aa20.06■□□□□ 0.8
SMARCE1-203ENST00000377808 RIMBP3Q9UFD9 1639 aa20.06■□□□□ 0.8
SMARCE1-203ENST00000377808 ARHGEF11O15085 1522 aa20.03■□□□□ 0.8
SMARCE1-203ENST00000377808 ADAMTS12P58397 1594 aa19.97■□□□□ 0.79
SMARCE1-203ENST00000377808 CLASP1Q7Z460 1538 aa19.95■□□□□ 0.78
SMARCE1-203ENST00000377808 ERICH3Q5RHP9 1530 aa19.94■□□□□ 0.78
SMARCE1-203ENST00000377808 GRIN2AQ12879 1464 aa19.92■□□□□ 0.78
SMARCE1-203ENST00000377808 FHAD1B1AJZ9 1412 aa19.91■□□□□ 0.78
SMARCE1-203ENST00000377808 CYB5RLQ6IPT4 315 aa19.91■□□□□ 0.78
SMARCE1-203ENST00000377808 ARAP1Q96P48 1450 aa19.86■□□□□ 0.77
SMARCE1-203ENST00000377808 KIF27Q86VH2 1401 aa19.86■□□□□ 0.77
SMARCE1-203ENST00000377808 CEP170Q5SW79 1584 aa19.83■□□□□ 0.77
SMARCE1-203ENST00000377808 NUP160Q12769 1436 aa19.81■□□□□ 0.76
SMARCE1-203ENST00000377808 IGF1RP08069 1367 aa19.76■□□□□ 0.75
SMARCE1-203ENST00000377808 CUL7Q14999 1698 aa19.74■□□□□ 0.75
SMARCE1-203ENST00000377808 ERCC6L2Q5T890 1561 aa19.7■□□□□ 0.74
SMARCE1-203ENST00000377808 CHIC1Q5VXU3 224 aa19.7■□□□□ 0.74
SMARCE1-203ENST00000377808 CARMIL1Q5VZK9 1371 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms