RNA–Protein interactions for RNA: ENST00000376656.8

TRIM39-201, Transcript of tripartite motif containing 39, humanhuman

APPRIS P4 TSL 2 BASIC

Gene TRIM39, Length 3,338 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-201ENST00000376656 NISCHQ9Y2I1 1504 aa32.45■■■□□ 2.79
TRIM39-201ENST00000376656 SHROOM4Q9ULL8 1493 aa28.35■■■□□ 2.13
TRIM39-201ENST00000376656 SUPT5HO00267 1087 aaKnown RBP28.07■■■□□ 2.08
TRIM39-201ENST00000376656 HRCP23327 699 aa27.75■■■□□ 2.03
TRIM39-201ENST00000376656 MYO15BQ96JP2 1530 aa27.65■■■□□ 2.02
TRIM39-201ENST00000376656 ZCCHC6Q5VYS8 1495 aaKnown RBP27.56■■■□□ 2
TRIM39-201ENST00000376656 CHIC1Q5VXU3 224 aa27.52■■■□□ 2
TRIM39-201ENST00000376656 PCGF6Q9BYE7 350 aa27.37■■□□□ 1.97
TRIM39-201ENST00000376656 PPARGC1BQ86YN6 1023 aaKnown RBP27.21■■□□□ 1.95
TRIM39-201ENST00000376656 CCDC180Q9P1Z9 1646 aa27.2■■□□□ 1.94
TRIM39-201ENST00000376656 DCAF8L2P0C7V8 631 aa26.94■■□□□ 1.9
TRIM39-201ENST00000376656 DCAF1Q9Y4B6 1507 aa26.94■■□□□ 1.9
TRIM39-201ENST00000376656 LOC105371045A0A1W2PR82 267 aa26.83■■□□□ 1.89
TRIM39-201ENST00000376656 TRIM26Q12899 539 aaPredicted RBP26.6■■□□□ 1.85
TRIM39-201ENST00000376656 ZEB1P37275 1124 aaPredicted RBP26.23■■□□□ 1.79
TRIM39-201ENST00000376656 ABCC9O60706 1549 aa26.14■■□□□ 1.77
TRIM39-201ENST00000376656 PELP1Q8IZL8 1130 aaKnown RBP26.08■■□□□ 1.77
TRIM39-201ENST00000376656 SCAF1Q9H7N4 1312 aaKnown RBP26.03■■□□□ 1.76
TRIM39-201ENST00000376656 TRIM41Q8WV44 630 aa26.01■■□□□ 1.75
TRIM39-201ENST00000376656 RSF1Q96T23 1441 aaPredicted RBP25.97■■□□□ 1.75
TRIM39-201ENST00000376656 FAM9AQ8IZU1 332 aaPredicted RBP25.95■■□□□ 1.75
TRIM39-201ENST00000376656 RB1CC1Q8TDY2 1594 aa25.84■■□□□ 1.73
TRIM39-201ENST00000376656 EHMT2Q96KQ7 1210 aa25.81■■□□□ 1.72
TRIM39-201ENST00000376656 SCRIBQ14160 1630 aa25.79■■□□□ 1.72
TRIM39-201ENST00000376656 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.52■■□□□ 1.68
TRIM39-201ENST00000376656 ACIN1Q9UKV3 1341 aaKnown RBP25.51■■□□□ 1.67
TRIM39-201ENST00000376656 NEUROD1Q13562 356 aa25.47■■□□□ 1.67
TRIM39-201ENST00000376656 CCER1Q8TC90 406 aaPredicted RBP25.44■■□□□ 1.66
TRIM39-201ENST00000376656 CECR2Q9BXF3 1484 aa25.38■■□□□ 1.65
TRIM39-201ENST00000376656 MROH2BQ7Z745 1585 aa25.33■■□□□ 1.65
TRIM39-201ENST00000376656 DIEXFQ68CQ4 756 aaKnown RBP25.29■■□□□ 1.64
TRIM39-201ENST00000376656 GTF3C3Q9Y5Q9 886 aa25.27■■□□□ 1.64
TRIM39-201ENST00000376656 WIZO95785 1651 aa25.25■■□□□ 1.63
TRIM39-201ENST00000376656 CENPBP07199 599 aaPredicted RBP25.2■■□□□ 1.63
TRIM39-201ENST00000376656 TTBK1Q5TCY1 1321 aaPredicted RBP25.13■■□□□ 1.61
TRIM39-201ENST00000376656 EIF4G1Q04637 1599 aaKnown RBP25.12■■□□□ 1.61
TRIM39-201ENST00000376656 BAZ1AQ9NRL2 1556 aaPredicted RBP25.06■■□□□ 1.6
TRIM39-201ENST00000376656 WRNQ14191 1432 aaPredicted RBP eCLIP25.05■■□□□ 1.6
TRIM39-201ENST00000376656 NACADO15069 1562 aa25.02■■□□□ 1.6
TRIM39-201ENST00000376656 CEP162Q5TB80 1403 aa24.97■■□□□ 1.59
TRIM39-201ENST00000376656 ABCC8Q09428 1581 aa24.95■■□□□ 1.58
TRIM39-201ENST00000376656 CCDC88BA6NC98 1476 aa24.94■■□□□ 1.58
TRIM39-201ENST00000376656 ZNF316A6NFI3 1004 aaPredicted RBP24.91■■□□□ 1.58
TRIM39-201ENST00000376656 MYT1Q01538 1121 aa24.9■■□□□ 1.58
TRIM39-201ENST00000376656 TNIKQ9UKE5 1360 aa24.83■■□□□ 1.57
TRIM39-201ENST00000376656 SOGA1O94964 1423 aa24.83■■□□□ 1.57
TRIM39-201ENST00000376656 YTHDC1Q96MU7 727 aaKnown RBP24.83■■□□□ 1.56
TRIM39-201ENST00000376656 TOP2AP11388 1531 aaKnown RBP24.76■■□□□ 1.55
TRIM39-201ENST00000376656 UBTFP17480 764 aaKnown RBP24.71■■□□□ 1.55
TRIM39-201ENST00000376656 RUSC2Q8N2Y8 1516 aa24.71■■□□□ 1.55
TRIM39-201ENST00000376656 MIER1Q8N108 512 aa24.7■■□□□ 1.54
TRIM39-201ENST00000376656 CSRNP3Q8WYN3 585 aa24.69■■□□□ 1.54
TRIM39-201ENST00000376656 SMARCA2P51531 1590 aa24.69■■□□□ 1.54
TRIM39-201ENST00000376656 EEA1Q15075 1411 aa24.64■■□□□ 1.53
TRIM39-201ENST00000376656 SMARCA4P51532 1647 aa24.6■■□□□ 1.53
TRIM39-201ENST00000376656 HNRNPUL2Q1KMD3 747 aaKnown RBP24.59■■□□□ 1.53
TRIM39-201ENST00000376656 GOLGA3Q08378 1498 aa24.58■■□□□ 1.53
TRIM39-201ENST00000376656 CLIP1P30622 1438 aa24.36■■□□□ 1.49
TRIM39-201ENST00000376656 CEP164Q9UPV0 1460 aa24.36■■□□□ 1.49
TRIM39-201ENST00000376656 KIF21BO75037 1637 aa24.32■■□□□ 1.48
TRIM39-201ENST00000376656 VPS8Q8N3P4 1428 aa24.32■■□□□ 1.48
TRIM39-201ENST00000376656 UNC13AQ9UPW8 1703 aa24.26■■□□□ 1.47
TRIM39-201ENST00000376656 SYNJ1O43426 1573 aa24.26■■□□□ 1.47
TRIM39-201ENST00000376656 APLP2Q06481 763 aa24.24■■□□□ 1.47
TRIM39-201ENST00000376656 RANGAP1P46060 587 aaPredicted RBP24.18■■□□□ 1.46
TRIM39-201ENST00000376656 RAPGEF2Q9Y4G8 1499 aa24.17■■□□□ 1.46
TRIM39-201ENST00000376656 SUPT16HQ9Y5B9 1047 aaKnown RBP24.17■■□□□ 1.46
TRIM39-201ENST00000376656 BAZ1BQ9UIG0 1483 aaKnown RBP24.16■■□□□ 1.46
TRIM39-201ENST00000376656 DHX57Q6P158 1386 aaKnown RBP24.13■■□□□ 1.45
TRIM39-201ENST00000376656 CLSPNQ9HAW4 1339 aa24.1■■□□□ 1.45
TRIM39-201ENST00000376656 PEG3Q9GZU2 1588 aa24.01■■□□□ 1.43
TRIM39-201ENST00000376656 PABPN1Q86U42 306 aaKnown RBP eCLIP23.99■■□□□ 1.43
TRIM39-201ENST00000376656 TSHZ2Q9NRE2 1034 aa23.96■■□□□ 1.43
TRIM39-201ENST00000376656 KANK4Q5T7N3 995 aaPredicted RBP23.94■■□□□ 1.42
TRIM39-201ENST00000376656 ARAP1Q96P48 1450 aa23.91■■□□□ 1.42
TRIM39-201ENST00000376656 BICRAQ9NZM4 1560 aa23.91■■□□□ 1.42
TRIM39-201ENST00000376656 TOP2BQ02880 1626 aa23.84■■□□□ 1.41
TRIM39-201ENST00000376656 RRBP1Q9P2E9 1410 aaKnown RBP23.83■■□□□ 1.41
TRIM39-201ENST00000376656 KCNH8Q96L42 1107 aa23.83■■□□□ 1.41
TRIM39-201ENST00000376656 ATAD2BQ9ULI0 1458 aa23.82■■□□□ 1.4
TRIM39-201ENST00000376656 ERICH3Q5RHP9 1530 aa23.8■■□□□ 1.4
TRIM39-201ENST00000376656 PRXQ9BXM0 1461 aa23.79■■□□□ 1.4
TRIM39-201ENST00000376656 ANP32EQ9BTT0 268 aa23.78■■□□□ 1.4
TRIM39-201ENST00000376656 CUX2O14529 1486 aa23.78■■□□□ 1.4
TRIM39-201ENST00000376656 BIVM-ERCC5R4GMW8 1640 aa23.73■■□□□ 1.39
TRIM39-201ENST00000376656 CCNB3Q8WWL7 1395 aa23.72■■□□□ 1.39
TRIM39-201ENST00000376656 ITGAEP38570 1179 aa23.72■■□□□ 1.39
TRIM39-201ENST00000376656 BCANQ96GW7 911 aa23.7■■□□□ 1.38
TRIM39-201ENST00000376656 MAPKBP1O60336 1514 aa23.64■■□□□ 1.38
TRIM39-201ENST00000376656 RAB3GAP2Q9H2M9 1393 aa23.63■■□□□ 1.37
TRIM39-201ENST00000376656 FKBP8Q14318 412 aa23.61■■□□□ 1.37
TRIM39-201ENST00000376656 ARHGAP35Q9NRY4 1499 aa23.59■■□□□ 1.37
TRIM39-201ENST00000376656 DDX10Q13206 875 aaKnown RBP23.57■■□□□ 1.36
TRIM39-201ENST00000376656 KIF27Q86VH2 1401 aa23.53■■□□□ 1.36
TRIM39-201ENST00000376656 CUX1P39880 1505 aa23.53■■□□□ 1.36
TRIM39-201ENST00000376656 WDR97A6NE52 1622 aa23.52■■□□□ 1.36
TRIM39-201ENST00000376656 SIN3AQ96ST3 1273 aa23.49■■□□□ 1.35
TRIM39-201ENST00000376656 SETD5Q9C0A6 1442 aa23.47■■□□□ 1.35
TRIM39-201ENST00000376656 PPP1R15AO75807 674 aaPredicted RBP23.45■■□□□ 1.34
TRIM39-201ENST00000376656 BCL11AQ9H165 835 aa23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms