RNA–Protein interactions for RNA: ENST00000376266.9

CCHCR1-201, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCHCR1, Length 2,625 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-201ENST00000376266 NISCHQ9Y2I1 1504 aa33.29■■■□□ 2.92
CCHCR1-201ENST00000376266 CCDC180Q9P1Z9 1646 aa29.25■■■□□ 2.27
CCHCR1-201ENST00000376266 ABCC9O60706 1549 aa28.24■■■□□ 2.11
CCHCR1-201ENST00000376266 ZCCHC6Q5VYS8 1495 aaKnown RBP27.84■■■□□ 2.05
CCHCR1-201ENST00000376266 DCAF8L2P0C7V8 631 aa27.76■■■□□ 2.04
CCHCR1-201ENST00000376266 DCAF1Q9Y4B6 1507 aa27.48■■□□□ 1.99
CCHCR1-201ENST00000376266 NACADO15069 1562 aa27.4■■□□□ 1.98
CCHCR1-201ENST00000376266 MYO15BQ96JP2 1530 aa27.37■■□□□ 1.97
CCHCR1-201ENST00000376266 RB1CC1Q8TDY2 1594 aa27.3■■□□□ 1.96
CCHCR1-201ENST00000376266 SCRIBQ14160 1630 aa26.87■■□□□ 1.89
CCHCR1-201ENST00000376266 SHROOM4Q9ULL8 1493 aa26.82■■□□□ 1.88
CCHCR1-201ENST00000376266 UNC13AQ9UPW8 1703 aa26.72■■□□□ 1.87
CCHCR1-201ENST00000376266 PABPN1Q86U42 306 aaKnown RBP eCLIP26.55■■□□□ 1.84
CCHCR1-201ENST00000376266 BICRAQ9NZM4 1560 aa26.5■■□□□ 1.83
CCHCR1-201ENST00000376266 CECR2Q9BXF3 1484 aa25.94■■□□□ 1.74
CCHCR1-201ENST00000376266 EIF4G1Q04637 1599 aaKnown RBP25.75■■□□□ 1.71
CCHCR1-201ENST00000376266 BAZ1AQ9NRL2 1556 aaPredicted RBP25.73■■□□□ 1.71
CCHCR1-201ENST00000376266 MROH2BQ7Z745 1585 aa25.71■■□□□ 1.71
CCHCR1-201ENST00000376266 SMARCA4P51532 1647 aa25.7■■□□□ 1.7
CCHCR1-201ENST00000376266 RSF1Q96T23 1441 aaPredicted RBP25.62■■□□□ 1.69
CCHCR1-201ENST00000376266 SUPT5HO00267 1087 aaKnown RBP25.53■■□□□ 1.68
CCHCR1-201ENST00000376266 CC2D2AQ9P2K1 1620 aa25.52■■□□□ 1.68
CCHCR1-201ENST00000376266 DNAJC5BQ9UF47 199 aa25.47■■□□□ 1.67
CCHCR1-201ENST00000376266 WIZO95785 1651 aa25.46■■□□□ 1.67
CCHCR1-201ENST00000376266 ATAD2BQ9ULI0 1458 aa25.44■■□□□ 1.66
CCHCR1-201ENST00000376266 PEG3Q9GZU2 1588 aa25.39■■□□□ 1.66
CCHCR1-201ENST00000376266 SMARCA2P51531 1590 aa25.38■■□□□ 1.65
CCHCR1-201ENST00000376266 NCAPD3P42695 1498 aa25.31■■□□□ 1.64
CCHCR1-201ENST00000376266 BAZ1BQ9UIG0 1483 aaKnown RBP25.26■■□□□ 1.63
CCHCR1-201ENST00000376266 HMGXB3Q12766 1538 aa25.2■■□□□ 1.62
CCHCR1-201ENST00000376266 TOP2AP11388 1531 aaKnown RBP25.16■■□□□ 1.62
CCHCR1-201ENST00000376266 HRCP23327 699 aa25.08■■□□□ 1.61
CCHCR1-201ENST00000376266 CCDC88BA6NC98 1476 aa24.93■■□□□ 1.58
CCHCR1-201ENST00000376266 CADPSQ9ULU8 1353 aa24.63■■□□□ 1.53
CCHCR1-201ENST00000376266 NESP48681 1621 aa24.62■■□□□ 1.53
CCHCR1-201ENST00000376266 CFTRP13569 1480 aa24.59■■□□□ 1.53
CCHCR1-201ENST00000376266 PCGF6Q9BYE7 350 aa24.56■■□□□ 1.52
CCHCR1-201ENST00000376266 LAMC3Q9Y6N6 1575 aa24.52■■□□□ 1.52
CCHCR1-201ENST00000376266 PPARGC1BQ86YN6 1023 aaKnown RBP24.51■■□□□ 1.51
CCHCR1-201ENST00000376266 PRDM2Q13029 1718 aa24.37■■□□□ 1.49
CCHCR1-201ENST00000376266 PDS5BQ9NTI5 1447 aa24.37■■□□□ 1.49
CCHCR1-201ENST00000376266 FANCD2Q9BXW9 1451 aa24.36■■□□□ 1.49
CCHCR1-201ENST00000376266 CHIC1Q5VXU3 224 aa24.29■■□□□ 1.48
CCHCR1-201ENST00000376266 PELP1Q8IZL8 1130 aaKnown RBP24.29■■□□□ 1.48
CCHCR1-201ENST00000376266 KIF21AQ7Z4S6 1674 aa24.28■■□□□ 1.48
CCHCR1-201ENST00000376266 ERCC6Q03468 1493 aa24.26■■□□□ 1.47
CCHCR1-201ENST00000376266 CEP164Q9UPV0 1460 aa24.26■■□□□ 1.47
CCHCR1-201ENST00000376266 ABCC8Q09428 1581 aa24.23■■□□□ 1.47
CCHCR1-201ENST00000376266 WRNQ14191 1432 aaPredicted RBP eCLIP24.13■■□□□ 1.45
CCHCR1-201ENST00000376266 URB2Q14146 1524 aaKnown RBP24.09■■□□□ 1.45
CCHCR1-201ENST00000376266 MRC2Q9UBG0 1479 aa24.08■■□□□ 1.45
CCHCR1-201ENST00000376266 CUX1P39880 1505 aa24.07■■□□□ 1.44
CCHCR1-201ENST00000376266 SYNJ1O43426 1573 aa24.04■■□□□ 1.44
CCHCR1-201ENST00000376266 THOC2Q8NI27 1593 aaKnown RBP24.03■■□□□ 1.44
CCHCR1-201ENST00000376266 TOPBP1Q92547 1522 aa24.02■■□□□ 1.44
CCHCR1-201ENST00000376266 TRIM41Q8WV44 630 aa24.02■■□□□ 1.44
CCHCR1-201ENST00000376266 DNMBPQ6XZF7 1577 aa24.01■■□□□ 1.43
CCHCR1-201ENST00000376266 TOP2BQ02880 1626 aa23.97■■□□□ 1.43
CCHCR1-201ENST00000376266 WDR62O43379 1518 aa23.97■■□□□ 1.43
CCHCR1-201ENST00000376266 BIVM-ERCC5R4GMW8 1640 aa23.95■■□□□ 1.42
CCHCR1-201ENST00000376266 FGD5Q6ZNL6 1462 aa23.9■■□□□ 1.42
CCHCR1-201ENST00000376266 POLA1P09884 1462 aaPredicted RBP23.87■■□□□ 1.41
CCHCR1-201ENST00000376266 RAD54L2Q9Y4B4 1467 aa23.81■■□□□ 1.4
CCHCR1-201ENST00000376266 CUX2O14529 1486 aa23.8■■□□□ 1.4
CCHCR1-201ENST00000376266 SOGA1O94964 1423 aa23.79■■□□□ 1.4
CCHCR1-201ENST00000376266 TRIM26Q12899 539 aaPredicted RBP23.79■■□□□ 1.4
CCHCR1-201ENST00000376266 LOC105371045A0A1W2PR82 267 aa23.72■■□□□ 1.39
CCHCR1-201ENST00000376266 SCAF1Q9H7N4 1312 aaKnown RBP23.71■■□□□ 1.39
CCHCR1-201ENST00000376266 TARBP1Q13395 1621 aaKnown RBP23.7■■□□□ 1.38
CCHCR1-201ENST00000376266 IFT140Q96RY7 1462 aa23.7■■□□□ 1.38
CCHCR1-201ENST00000376266 ABCA10Q8WWZ4 1543 aa23.66■■□□□ 1.38
CCHCR1-201ENST00000376266 TDRD9Q8NDG6 1382 aaKnown RBP23.64■■□□□ 1.38
CCHCR1-201ENST00000376266 ZEB1P37275 1124 aaPredicted RBP23.64■■□□□ 1.37
CCHCR1-201ENST00000376266 ZNF608Q9ULD9 1512 aaPredicted RBP23.63■■□□□ 1.37
CCHCR1-201ENST00000376266 RUSC2Q8N2Y8 1516 aa23.62■■□□□ 1.37
CCHCR1-201ENST00000376266 WDR97A6NE52 1622 aa23.61■■□□□ 1.37
CCHCR1-201ENST00000376266 FAM9AQ8IZU1 332 aaPredicted RBP23.6■■□□□ 1.37
CCHCR1-201ENST00000376266 AQRO60306 1485 aaKnown RBP eCLIP23.58■■□□□ 1.372e-10■■■■■ 47.9
CCHCR1-201ENST00000376266 KIF27Q86VH2 1401 aa23.56■■□□□ 1.36
CCHCR1-201ENST00000376266 GAPVD1Q14C86 1478 aa23.52■■□□□ 1.36
CCHCR1-201ENST00000376266 ABCA5Q8WWZ7 1642 aa23.5■■□□□ 1.35
CCHCR1-201ENST00000376266 EIF4G3O43432 1585 aaKnown RBP23.5■■□□□ 1.35
CCHCR1-201ENST00000376266 EEA1Q15075 1411 aa23.44■■□□□ 1.34
CCHCR1-201ENST00000376266 IGF1RP08069 1367 aa23.43■■□□□ 1.34
CCHCR1-201ENST00000376266 CSRNP3Q8WYN3 585 aa23.43■■□□□ 1.34
CCHCR1-201ENST00000376266 GRIN2BQ13224 1484 aa23.41■■□□□ 1.34
CCHCR1-201ENST00000376266 PBRM1Q86U86 1689 aa23.39■■□□□ 1.33
CCHCR1-201ENST00000376266 MYT1Q01538 1121 aa23.37■■□□□ 1.33
CCHCR1-201ENST00000376266 ERICH3Q5RHP9 1530 aa23.37■■□□□ 1.33
CCHCR1-201ENST00000376266 SNAPC4Q5SXM2 1469 aa23.33■■□□□ 1.33
CCHCR1-201ENST00000376266 EHMT2Q96KQ7 1210 aa23.31■■□□□ 1.32
CCHCR1-201ENST00000376266 CARMIL1Q5VZK9 1371 aa23.3■■□□□ 1.32
CCHCR1-201ENST00000376266 MAGI1Q96QZ7 1491 aaPredicted RBP23.26■■□□□ 1.31
CCHCR1-201ENST00000376266 PRXQ9BXM0 1461 aa23.26■■□□□ 1.31
CCHCR1-201ENST00000376266 CUL7Q14999 1698 aa23.25■■□□□ 1.31
CCHCR1-201ENST00000376266 FHAD1B1AJZ9 1412 aa23.24■■□□□ 1.31
CCHCR1-201ENST00000376266 ADAMTS12P58397 1594 aa23.24■■□□□ 1.31
CCHCR1-201ENST00000376266 FBLN2P98095 1184 aa23.24■■□□□ 1.31
CCHCR1-201ENST00000376266 CHMP7Q8WUX9 453 aaPredicted RBP23.2■■□□□ 1.3
CCHCR1-201ENST00000376266 RAPGEF2Q9Y4G8 1499 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 128 ms