RNA–Protein interactions for RNA: ENST00000373474.8

LMX1B-202, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

TSL 1 (best) BASIC

Gene LMX1B, Length 5,797 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-202ENST00000373474 DCAF8L2P0C7V8 631 aa24.09■■□□□ 1.45
LMX1B-202ENST00000373474 NISCHQ9Y2I1 1504 aa23.85■■□□□ 1.41
LMX1B-202ENST00000373474 SUPT5HO00267 1087 aaKnown RBP23.29■■□□□ 1.32
LMX1B-202ENST00000373474 PELP1Q8IZL8 1130 aaKnown RBP23.05■■□□□ 1.28
LMX1B-202ENST00000373474 SHROOM4Q9ULL8 1493 aa22.95■■□□□ 1.26
LMX1B-202ENST00000373474 EHMT2Q96KQ7 1210 aa22.37■■□□□ 1.17
LMX1B-202ENST00000373474 MYT1Q01538 1121 aa22.31■■□□□ 1.16
LMX1B-202ENST00000373474 APLP2Q06481 763 aa22.03■■□□□ 1.12
LMX1B-202ENST00000373474 PCGF6Q9BYE7 350 aa22.02■■□□□ 1.11
LMX1B-202ENST00000373474 ERICH6Q7L0X2 663 aa22■■□□□ 1.11
LMX1B-202ENST00000373474 CCER1Q8TC90 406 aaPredicted RBP21.94■■□□□ 1.1
LMX1B-202ENST00000373474 FAM9AQ8IZU1 332 aaPredicted RBP21.91■■□□□ 1.1
LMX1B-202ENST00000373474 CENPBP07199 599 aaPredicted RBP21.82■■□□□ 1.08
LMX1B-202ENST00000373474 ZEB1P37275 1124 aaPredicted RBP21.8■■□□□ 1.08
LMX1B-202ENST00000373474 TTBK1Q5TCY1 1321 aaPredicted RBP21.69■■□□□ 1.06
LMX1B-202ENST00000373474 TRIM41Q8WV44 630 aa21.64■■□□□ 1.05
LMX1B-202ENST00000373474 RANGAP1P46060 587 aaPredicted RBP21.34■■□□□ 1.01
LMX1B-202ENST00000373474 UBTFP17480 764 aaKnown RBP21.27■■□□□ 1
LMX1B-202ENST00000373474 NEFLP07196 543 aa21.26■□□□□ 0.99
LMX1B-202ENST00000373474 TRIM26Q12899 539 aaPredicted RBP21.21■□□□□ 0.99
LMX1B-202ENST00000373474 HRCP23327 699 aa21.14■□□□□ 0.98
LMX1B-202ENST00000373474 ATP1B4Q9UN42 357 aaPredicted RBP21.12■□□□□ 0.97
LMX1B-202ENST00000373474 YTHDC1Q96MU7 727 aaKnown RBP21.07■□□□□ 0.96
LMX1B-202ENST00000373474 PPARGC1BQ86YN6 1023 aaKnown RBP21.01■□□□□ 0.95
LMX1B-202ENST00000373474 CHIC1Q5VXU3 224 aa20.94■□□□□ 0.94
LMX1B-202ENST00000373474 LOC105371045A0A1W2PR82 267 aa20.85■□□□□ 0.93
LMX1B-202ENST00000373474 DAXXQ9UER7 740 aaPredicted RBP20.8■□□□□ 0.92
LMX1B-202ENST00000373474 HNRNPUL2Q1KMD3 747 aaKnown RBP20.56■□□□□ 0.88
LMX1B-202ENST00000373474 ITGAEP38570 1179 aa20.56■□□□□ 0.88
LMX1B-202ENST00000373474 RTL5Q5HYW3 569 aaPredicted RBP20.51■□□□□ 0.87
LMX1B-202ENST00000373474 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.45■□□□□ 0.86
LMX1B-202ENST00000373474 DIEXFQ68CQ4 756 aaKnown RBP20.44■□□□□ 0.86
LMX1B-202ENST00000373474 POLR3GLQ9BT43 218 aa20.32■□□□□ 0.84
LMX1B-202ENST00000373474 ZNF316A6NFI3 1004 aaPredicted RBP20.27■□□□□ 0.84
LMX1B-202ENST00000373474 FAM50AQ14320 339 aaKnown RBP20.12■□□□□ 0.81
LMX1B-202ENST00000373474 MYT1LQ9UL68 1186 aa20.12■□□□□ 0.81
LMX1B-202ENST00000373474 CNGB1Q14028 1251 aaPredicted RBP20.08■□□□□ 0.81
LMX1B-202ENST00000373474 ABCC9O60706 1549 aa20.08■□□□□ 0.8
LMX1B-202ENST00000373474 GTF3C3Q9Y5Q9 886 aa20.07■□□□□ 0.8
LMX1B-202ENST00000373474 NEUROD1Q13562 356 aa19.99■□□□□ 0.79
LMX1B-202ENST00000373474 CLSPNQ9HAW4 1339 aa19.98■□□□□ 0.79
LMX1B-202ENST00000373474 TRIM52Q96A61 297 aa19.96■□□□□ 0.79
LMX1B-202ENST00000373474 PABPN1Q86U42 306 aaKnown RBP eCLIP19.95■□□□□ 0.78
LMX1B-202ENST00000373474 ANP32CO43423 234 aa19.92■□□□□ 0.78
LMX1B-202ENST00000373474 DCAF1Q9Y4B6 1507 aa19.89■□□□□ 0.77
LMX1B-202ENST00000373474 ACIN1Q9UKV3 1341 aaKnown RBP19.87■□□□□ 0.77
LMX1B-202ENST00000373474 BCANQ96GW7 911 aa19.87■□□□□ 0.77
LMX1B-202ENST00000373474 CDK11AQ9UQ88 783 aaPredicted RBP19.84■□□□□ 0.77
LMX1B-202ENST00000373474 ZCCHC6Q5VYS8 1495 aaKnown RBP19.84■□□□□ 0.77
LMX1B-202ENST00000373474 SLC4A1APQ9BWU0 796 aaKnown RBP19.83■□□□□ 0.76
LMX1B-202ENST00000373474 CSRNP3Q8WYN3 585 aa19.8■□□□□ 0.76
LMX1B-202ENST00000373474 GLIPR1L2Q4G1C9 344 aa19.77■□□□□ 0.75
LMX1B-202ENST00000373474 SCRIBQ14160 1630 aa19.72■□□□□ 0.75
LMX1B-202ENST00000373474 ZNF326Q5BKZ1 582 aaKnown RBP19.66■□□□□ 0.74
LMX1B-202ENST00000373474 CCDC180Q9P1Z9 1646 aa19.61■□□□□ 0.73
LMX1B-202ENST00000373474 EIF5BO60841 1220 aaKnown RBP19.59■□□□□ 0.73
LMX1B-202ENST00000373474 ANP32AP39687 249 aaKnown RBP19.59■□□□□ 0.73
LMX1B-202ENST00000373474 P3H3Q8IVL6 736 aa19.55■□□□□ 0.72
LMX1B-202ENST00000373474 ZBTB47Q9UFB7 747 aaPredicted RBP19.53■□□□□ 0.72
LMX1B-202ENST00000373474 ANP32BQ92688 251 aaKnown RBP19.47■□□□□ 0.71
LMX1B-202ENST00000373474 TONSLQ96HA7 1378 aa19.42■□□□□ 0.7
LMX1B-202ENST00000373474 CANXP27824 592 aaKnown RBP19.42■□□□□ 0.7
LMX1B-202ENST00000373474 FBLN2P98095 1184 aa19.42■□□□□ 0.7
LMX1B-202ENST00000373474 FKBP8Q14318 412 aa19.42■□□□□ 0.7
LMX1B-202ENST00000373474 MYO15BQ96JP2 1530 aa19.4■□□□□ 0.7
LMX1B-202ENST00000373474 ARID3CA6NKF2 412 aa19.37■□□□□ 0.69
LMX1B-202ENST00000373474 ZNF777Q9ULD5 760 aaPredicted RBP19.32■□□□□ 0.68
LMX1B-202ENST00000373474 DDX10Q13206 875 aaKnown RBP19.3■□□□□ 0.68
LMX1B-202ENST00000373474 HNRNPUQ00839 825 aaKnown RBP eCLIP19.28■□□□□ 0.68
LMX1B-202ENST00000373474 SCAF1Q9H7N4 1312 aaKnown RBP19.28■□□□□ 0.68
LMX1B-202ENST00000373474 NPM2Q86SE8 214 aaKnown RBP19.26■□□□□ 0.67
LMX1B-202ENST00000373474 NEFMP07197 916 aa19.24■□□□□ 0.67
LMX1B-202ENST00000373474 CLIP1P30622 1438 aa19.22■□□□□ 0.67
LMX1B-202ENST00000373474 FAM9BQ8IZU0 186 aa19.2■□□□□ 0.66
LMX1B-202ENST00000373474 MIER1Q8N108 512 aa19.2■□□□□ 0.66
LMX1B-202ENST00000373474 EEA1Q15075 1411 aa19.18■□□□□ 0.66
LMX1B-202ENST00000373474 GOLGA3Q08378 1498 aa19.17■□□□□ 0.66
LMX1B-202ENST00000373474 RSF1Q96T23 1441 aaPredicted RBP19.16■□□□□ 0.66
LMX1B-202ENST00000373474 CEP162Q5TB80 1403 aa19.15■□□□□ 0.66
LMX1B-202ENST00000373474 UPF2Q9HAU5 1272 aaKnown RBP19.12■□□□□ 0.65
LMX1B-202ENST00000373474 BCL11AQ9H165 835 aa19.1■□□□□ 0.65
LMX1B-202ENST00000373474 HSP90AA1P07900 732 aaKnown RBP19.09■□□□□ 0.65
LMX1B-202ENST00000373474 CHIC2Q9UKJ5 165 aa19.09■□□□□ 0.65
LMX1B-202ENST00000373474 RB1CC1Q8TDY2 1594 aa19.07■□□□□ 0.64
LMX1B-202ENST00000373474 SLC24A1O60721 1099 aa19.06■□□□□ 0.64
LMX1B-202ENST00000373474 CCDC136Q96JN2 1154 aa19.06■□□□□ 0.64
LMX1B-202ENST00000373474 MTUS2Q5JR59 1369 aa19.06■□□□□ 0.64
LMX1B-202ENST00000373474 TMC1Q8TDI8 760 aa19.06■□□□□ 0.64
LMX1B-202ENST00000373474 MRS2Q9HD23 443 aa19.03■□□□□ 0.64
LMX1B-202ENST00000373474 TNIKQ9UKE5 1360 aa19■□□□□ 0.63
LMX1B-202ENST00000373474 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.99■□□□□ 0.63
LMX1B-202ENST00000373474 TNNT2P45379 298 aaPredicted RBP18.98■□□□□ 0.63
LMX1B-202ENST00000373474 SALL2Q9Y467 1007 aaPredicted RBP18.98■□□□□ 0.63
LMX1B-202ENST00000373474 NBR1Q14596 966 aa18.97■□□□□ 0.63
LMX1B-202ENST00000373474 WRNQ14191 1432 aaPredicted RBP eCLIP18.96■□□□□ 0.63
LMX1B-202ENST00000373474 EIF4G2P78344 907 aaKnown RBP eCLIP18.95■□□□□ 0.62
LMX1B-202ENST00000373474 CEP164Q9UPV0 1460 aa18.95■□□□□ 0.62
LMX1B-202ENST00000373474 NACADO15069 1562 aa18.94■□□□□ 0.62
LMX1B-202ENST00000373474 WDR43Q15061 677 aaKnown RBP eCLIP18.94■□□□□ 0.62
LMX1B-202ENST00000373474 HIRIP3Q9BW71 556 aaPredicted RBP18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms