RNA–Protein interactions for RNA: ENST00000370654.5

RPF1-201, Transcript of ribosome production factor 1 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RPF1, Length 1,385 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPF1-201ENST00000370654 NISCHQ9Y2I1 1504 aa33.05■■■□□ 2.88
RPF1-201ENST00000370654 ABCC9O60706 1549 aa29.62■■■□□ 2.33
RPF1-201ENST00000370654 CCDC180Q9P1Z9 1646 aa29.55■■■□□ 2.32
RPF1-201ENST00000370654 RB1CC1Q8TDY2 1594 aa28.1■■■□□ 2.09
RPF1-201ENST00000370654 NACADO15069 1562 aa27.93■■■□□ 2.06
RPF1-201ENST00000370654 DCAF8L2P0C7V8 631 aa27.91■■■□□ 2.06
RPF1-201ENST00000370654 DNAJC5BQ9UF47 199 aa27.85■■■□□ 2.05
RPF1-201ENST00000370654 PABPN1Q86U42 306 aaKnown RBP eCLIP27.63■■■□□ 2.01
RPF1-201ENST00000370654 UNC13AQ9UPW8 1703 aa27.56■■■□□ 2
RPF1-201ENST00000370654 MYO15BQ96JP2 1530 aa27.55■■■□□ 2
RPF1-201ENST00000370654 ZCCHC6Q5VYS8 1495 aaKnown RBP27.4■■□□□ 1.98
RPF1-201ENST00000370654 BICRAQ9NZM4 1560 aa27.4■■□□□ 1.98
RPF1-201ENST00000370654 DCAF1Q9Y4B6 1507 aa27.23■■□□□ 1.95
RPF1-201ENST00000370654 SCRIBQ14160 1630 aa27.03■■□□□ 1.92
RPF1-201ENST00000370654 SHROOM4Q9ULL8 1493 aa26.85■■□□□ 1.89
RPF1-201ENST00000370654 CC2D2AQ9P2K1 1620 aa26.73■■□□□ 1.87
RPF1-201ENST00000370654 EIF4G1Q04637 1599 aaKnown RBP26.67■■□□□ 1.86
RPF1-201ENST00000370654 CECR2Q9BXF3 1484 aa26.64■■□□□ 1.85
RPF1-201ENST00000370654 NCAPD3P42695 1498 aa25.83■■□□□ 1.72
RPF1-201ENST00000370654 ATAD2BQ9ULI0 1458 aa25.79■■□□□ 1.72
RPF1-201ENST00000370654 SMARCA4P51532 1647 aa25.76■■□□□ 1.71
RPF1-201ENST00000370654 SMARCA2P51531 1590 aa25.63■■□□□ 1.69
RPF1-201ENST00000370654 HMGXB3Q12766 1538 aa25.61■■□□□ 1.69
RPF1-201ENST00000370654 BAZ1AQ9NRL2 1556 aaPredicted RBP25.6■■□□□ 1.69
RPF1-201ENST00000370654 MROH2BQ7Z745 1585 aa25.53■■□□□ 1.68
RPF1-201ENST00000370654 BAZ1BQ9UIG0 1483 aaKnown RBP25.51■■□□□ 1.67
RPF1-201ENST00000370654 NESP48681 1621 aa25.5■■□□□ 1.67
RPF1-201ENST00000370654 PEG3Q9GZU2 1588 aa25.48■■□□□ 1.67
RPF1-201ENST00000370654 ERCC6Q03468 1493 aa25.48■■□□□ 1.67
RPF1-201ENST00000370654 CUX2O14529 1486 aa25.39■■□□□ 1.66
RPF1-201ENST00000370654 DNAJC5Q9H3Z4 198 aa25.39■■□□□ 1.65
RPF1-201ENST00000370654 WIZO95785 1651 aa25.21■■□□□ 1.63
RPF1-201ENST00000370654 LAMC3Q9Y6N6 1575 aa25.19■■□□□ 1.62
RPF1-201ENST00000370654 THOC2Q8NI27 1593 aaKnown RBP25.15■■□□□ 1.62
RPF1-201ENST00000370654 KIF21AQ7Z4S6 1674 aa25.11■■□□□ 1.61
RPF1-201ENST00000370654 CADPSQ9ULU8 1353 aa25.06■■□□□ 1.6
RPF1-201ENST00000370654 PDS5BQ9NTI5 1447 aa25.04■■□□□ 1.6
RPF1-201ENST00000370654 RSF1Q96T23 1441 aaPredicted RBP25.01■■□□□ 1.59
RPF1-201ENST00000370654 MRC2Q9UBG0 1479 aa24.86■■□□□ 1.57
RPF1-201ENST00000370654 TOP2AP11388 1531 aaKnown RBP24.83■■□□□ 1.57
RPF1-201ENST00000370654 WDR62O43379 1518 aa24.8■■□□□ 1.56
RPF1-201ENST00000370654 CFTRP13569 1480 aa24.78■■□□□ 1.56
RPF1-201ENST00000370654 FANCD2Q9BXW9 1451 aa24.78■■□□□ 1.56
RPF1-201ENST00000370654 CEP164Q9UPV0 1460 aa24.76■■□□□ 1.55
RPF1-201ENST00000370654 CCDC88BA6NC98 1476 aa24.62■■□□□ 1.53
RPF1-201ENST00000370654 URB2Q14146 1524 aaKnown RBP24.61■■□□□ 1.53
RPF1-201ENST00000370654 PRDM2Q13029 1718 aa24.47■■□□□ 1.51
RPF1-201ENST00000370654 TRIM41Q8WV44 630 aa24.33■■□□□ 1.49
RPF1-201ENST00000370654 TOPBP1Q92547 1522 aa24.33■■□□□ 1.49
RPF1-201ENST00000370654 ZNF608Q9ULD9 1512 aaPredicted RBP24.33■■□□□ 1.49
RPF1-201ENST00000370654 OSCARQ8IYS5 282 aa24.28■■□□□ 1.48
RPF1-201ENST00000370654 IFT140Q96RY7 1462 aa24.26■■□□□ 1.47
RPF1-201ENST00000370654 DNMBPQ6XZF7 1577 aa24.21■■□□□ 1.47
RPF1-201ENST00000370654 ABCC8Q09428 1581 aa24.16■■□□□ 1.46
RPF1-201ENST00000370654 EIF4G3O43432 1585 aaKnown RBP24.13■■□□□ 1.45
RPF1-201ENST00000370654 TARBP1Q13395 1621 aaKnown RBP24.11■■□□□ 1.45
RPF1-201ENST00000370654 AQRO60306 1485 aaKnown RBP eCLIP24.1■■□□□ 1.452e-6■■■■■ 26.9
RPF1-201ENST00000370654 POLA1P09884 1462 aaPredicted RBP24.09■■□□□ 1.45
RPF1-201ENST00000370654 RAD54L2Q9Y4B4 1467 aa24.05■■□□□ 1.44
RPF1-201ENST00000370654 RIMBP3CA6NJZ7 1639 aa23.99■■□□□ 1.43
RPF1-201ENST00000370654 RIMBP3BA6NNM3 1639 aa23.99■■□□□ 1.43
RPF1-201ENST00000370654 RIMBP3Q9UFD9 1639 aa23.99■■□□□ 1.43
RPF1-201ENST00000370654 SUPT5HO00267 1087 aaKnown RBP23.97■■□□□ 1.43
RPF1-201ENST00000370654 SOGA1O94964 1423 aa23.97■■□□□ 1.43
RPF1-201ENST00000370654 TDRD9Q8NDG6 1382 aaKnown RBP23.96■■□□□ 1.43
RPF1-201ENST00000370654 CUX1P39880 1505 aa23.96■■□□□ 1.43
RPF1-201ENST00000370654 FGD5Q6ZNL6 1462 aa23.95■■□□□ 1.42
RPF1-201ENST00000370654 CHD1O14646 1710 aa23.94■■□□□ 1.42
RPF1-201ENST00000370654 ARHGEF11O15085 1522 aa23.92■■□□□ 1.42
RPF1-201ENST00000370654 FBLN2P98095 1184 aa23.89■■□□□ 1.41
RPF1-201ENST00000370654 SNAPC4Q5SXM2 1469 aa23.82■■□□□ 1.4
RPF1-201ENST00000370654 CYB5RLQ6IPT4 315 aa23.77■■□□□ 1.4
RPF1-201ENST00000370654 WDR97A6NE52 1622 aa23.75■■□□□ 1.39
RPF1-201ENST00000370654 GRIN2BQ13224 1484 aa23.72■■□□□ 1.39
RPF1-201ENST00000370654 ARAP1Q96P48 1450 aa23.72■■□□□ 1.39
RPF1-201ENST00000370654 MAGI1Q96QZ7 1491 aaPredicted RBP23.69■■□□□ 1.38
RPF1-201ENST00000370654 CHMP7Q8WUX9 453 aaPredicted RBP23.69■■□□□ 1.38
RPF1-201ENST00000370654 CLASP1Q7Z460 1538 aa23.67■■□□□ 1.38
RPF1-201ENST00000370654 GAPVD1Q14C86 1478 aa23.66■■□□□ 1.38
RPF1-201ENST00000370654 ABCA10Q8WWZ4 1543 aa23.65■■□□□ 1.38
RPF1-201ENST00000370654 PBRM1Q86U86 1689 aa23.64■■□□□ 1.37
RPF1-201ENST00000370654 SYNJ2O15056 1496 aa23.64■■□□□ 1.37
RPF1-201ENST00000370654 ABCA5Q8WWZ7 1642 aa23.62■■□□□ 1.37
RPF1-201ENST00000370654 SYNJ1O43426 1573 aa23.59■■□□□ 1.37
RPF1-201ENST00000370654 WRNQ14191 1432 aaPredicted RBP eCLIP23.54■■□□□ 1.36
RPF1-201ENST00000370654 TOP2BQ02880 1626 aa23.54■■□□□ 1.36
RPF1-201ENST00000370654 BIVM-ERCC5R4GMW8 1640 aa23.54■■□□□ 1.36
RPF1-201ENST00000370654 TRHP20396 242 aaPredicted RBP23.44■■□□□ 1.34
RPF1-201ENST00000370654 GRIN2AQ12879 1464 aa23.43■■□□□ 1.34
RPF1-201ENST00000370654 ADAMTS12P58397 1594 aa23.43■■□□□ 1.34
RPF1-201ENST00000370654 ERCC6L2Q5T890 1561 aa23.4■■□□□ 1.34
RPF1-201ENST00000370654 CEP170Q5SW79 1584 aa23.39■■□□□ 1.33
RPF1-201ENST00000370654 AEBP2Q6ZN18 517 aaPredicted RBP23.38■■□□□ 1.33
RPF1-201ENST00000370654 NUP160Q12769 1436 aa23.36■■□□□ 1.33
RPF1-201ENST00000370654 FHAD1B1AJZ9 1412 aa23.35■■□□□ 1.33
RPF1-201ENST00000370654 ERICH3Q5RHP9 1530 aa23.32■■□□□ 1.32
RPF1-201ENST00000370654 SHROOM2Q13796 1616 aa23.25■■□□□ 1.31
RPF1-201ENST00000370654 PRG4Q92954 1404 aaPredicted RBP23.14■■□□□ 1.29
RPF1-201ENST00000370654 JPH4Q96JJ6 628 aa23.14■■□□□ 1.29
RPF1-201ENST00000370654 IGF1RP08069 1367 aa23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms