RNA–Protein interactions for RNA: ENST00000370086.7

SSR4-203, Transcript of signal sequence receptor subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSR4, Length 643 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR4-203ENST00000370086 NISCHQ9Y2I1 1504 aa35.61■■■■□ 3.29
SSR4-203ENST00000370086 CCDC180Q9P1Z9 1646 aa31.76■■■□□ 2.67
SSR4-203ENST00000370086 ABCC9O60706 1549 aa31.26■■■□□ 2.59
SSR4-203ENST00000370086 RB1CC1Q8TDY2 1594 aa29.97■■■□□ 2.39
SSR4-203ENST00000370086 NACADO15069 1562 aa29.88■■■□□ 2.37
SSR4-203ENST00000370086 DCAF8L2P0C7V8 631 aa29.8■■■□□ 2.36
SSR4-203ENST00000370086 ZCCHC6Q5VYS8 1495 aaKnown RBP29.61■■■□□ 2.33
SSR4-203ENST00000370086 MYO15BQ96JP2 1530 aa29.61■■■□□ 2.33
SSR4-203ENST00000370086 DCAF1Q9Y4B6 1507 aa29.43■■■□□ 2.3
SSR4-203ENST00000370086 UNC13AQ9UPW8 1703 aa29.42■■■□□ 2.3
SSR4-203ENST00000370086 PABPN1Q86U42 306 aaKnown RBP eCLIP29.17■■■□□ 2.26
SSR4-203ENST00000370086 BICRAQ9NZM4 1560 aa29.12■■■□□ 2.25
SSR4-203ENST00000370086 SCRIBQ14160 1630 aa28.98■■■□□ 2.23
SSR4-203ENST00000370086 DNAJC5BQ9UF47 199 aa28.9■■■□□ 2.22
SSR4-203ENST00000370086 SHROOM4Q9ULL8 1493 aa28.69■■■□□ 2.18
SSR4-203ENST00000370086 EIF4G1Q04637 1599 aaKnown RBP28.33■■■□□ 2.13
SSR4-203ENST00000370086 CC2D2AQ9P2K1 1620 aa28.29■■■□□ 2.12
SSR4-203ENST00000370086 CECR2Q9BXF3 1484 aa28.08■■■□□ 2.09
SSR4-203ENST00000370086 SMARCA4P51532 1647 aa27.7■■■□□ 2.02
SSR4-203ENST00000370086 BAZ1AQ9NRL2 1556 aaPredicted RBP27.6■■■□□ 2.01
SSR4-203ENST00000370086 NCAPD3P42695 1498 aa27.57■■■□□ 2
SSR4-203ENST00000370086 ATAD2BQ9ULI0 1458 aa27.57■■■□□ 2
SSR4-203ENST00000370086 SMARCA2P51531 1590 aa27.5■■□□□ 1.99
SSR4-203ENST00000370086 MROH2BQ7Z745 1585 aa27.46■■□□□ 1.99
SSR4-203ENST00000370086 HMGXB3Q12766 1538 aa27.41■■□□□ 1.98
SSR4-203ENST00000370086 PEG3Q9GZU2 1588 aa27.41■■□□□ 1.98
SSR4-203ENST00000370086 BAZ1BQ9UIG0 1483 aaKnown RBP27.31■■□□□ 1.96
SSR4-203ENST00000370086 WIZO95785 1651 aa27.2■■□□□ 1.94
SSR4-203ENST00000370086 RSF1Q96T23 1441 aaPredicted RBP27.05■■□□□ 1.92
SSR4-203ENST00000370086 NESP48681 1621 aa27.01■■□□□ 1.92
SSR4-203ENST00000370086 ERCC6Q03468 1493 aa26.92■■□□□ 1.9
SSR4-203ENST00000370086 LAMC3Q9Y6N6 1575 aa26.88■■□□□ 1.89
SSR4-203ENST00000370086 TOP2AP11388 1531 aaKnown RBP26.83■■□□□ 1.89
SSR4-203ENST00000370086 CADPSQ9ULU8 1353 aa26.74■■□□□ 1.87
SSR4-203ENST00000370086 KIF21AQ7Z4S6 1674 aa26.73■■□□□ 1.87
SSR4-203ENST00000370086 CUX2O14529 1486 aa26.71■■□□□ 1.87
SSR4-203ENST00000370086 PDS5BQ9NTI5 1447 aa26.67■■□□□ 1.86
SSR4-203ENST00000370086 THOC2Q8NI27 1593 aaKnown RBP26.65■■□□□ 1.86
SSR4-203ENST00000370086 CFTRP13569 1480 aa26.55■■□□□ 1.84
SSR4-203ENST00000370086 CCDC88BA6NC98 1476 aa26.53■■□□□ 1.84
SSR4-203ENST00000370086 FANCD2Q9BXW9 1451 aa26.45■■□□□ 1.82
SSR4-203ENST00000370086 MRC2Q9UBG0 1479 aa26.43■■□□□ 1.82
SSR4-203ENST00000370086 CEP164Q9UPV0 1460 aa26.43■■□□□ 1.82
SSR4-203ENST00000370086 PRDM2Q13029 1718 aa26.43■■□□□ 1.82
SSR4-203ENST00000370086 WDR62O43379 1518 aa26.38■■□□□ 1.81
SSR4-203ENST00000370086 URB2Q14146 1524 aaKnown RBP26.23■■□□□ 1.79
SSR4-203ENST00000370086 SUPT5HO00267 1087 aaKnown RBP26.2■■□□□ 1.78
SSR4-203ENST00000370086 DNAJC5Q9H3Z4 198 aa26.12■■□□□ 1.77
SSR4-203ENST00000370086 TOPBP1Q92547 1522 aa26.02■■□□□ 1.76
SSR4-203ENST00000370086 DNMBPQ6XZF7 1577 aa25.97■■□□□ 1.75
SSR4-203ENST00000370086 ABCC8Q09428 1581 aa25.96■■□□□ 1.75
SSR4-203ENST00000370086 IFT140Q96RY7 1462 aa25.87■■□□□ 1.73
SSR4-203ENST00000370086 ZNF608Q9ULD9 1512 aaPredicted RBP25.83■■□□□ 1.72
SSR4-203ENST00000370086 TARBP1Q13395 1621 aaKnown RBP25.79■■□□□ 1.72
SSR4-203ENST00000370086 POLA1P09884 1462 aaPredicted RBP25.79■■□□□ 1.72
SSR4-203ENST00000370086 CUX1P39880 1505 aa25.77■■□□□ 1.72
SSR4-203ENST00000370086 EIF4G3O43432 1585 aaKnown RBP25.72■■□□□ 1.71
SSR4-203ENST00000370086 FGD5Q6ZNL6 1462 aa25.69■■□□□ 1.7
SSR4-203ENST00000370086 RAD54L2Q9Y4B4 1467 aa25.69■■□□□ 1.7
SSR4-203ENST00000370086 SOGA1O94964 1423 aa25.66■■□□□ 1.7
SSR4-203ENST00000370086 AQRO60306 1485 aaKnown RBP eCLIP25.64■■□□□ 1.691e-7■■■■■ 36.9
SSR4-203ENST00000370086 OSCARQ8IYS5 282 aa25.55■■□□□ 1.68
SSR4-203ENST00000370086 WDR97A6NE52 1622 aa25.55■■□□□ 1.68
SSR4-203ENST00000370086 TDRD9Q8NDG6 1382 aaKnown RBP25.55■■□□□ 1.68
SSR4-203ENST00000370086 BIVM-ERCC5R4GMW8 1640 aa25.52■■□□□ 1.68
SSR4-203ENST00000370086 TOP2BQ02880 1626 aa25.49■■□□□ 1.67
SSR4-203ENST00000370086 SYNJ1O43426 1573 aa25.49■■□□□ 1.67
SSR4-203ENST00000370086 WRNQ14191 1432 aaPredicted RBP eCLIP25.48■■□□□ 1.67
SSR4-203ENST00000370086 CHD1O14646 1710 aa25.48■■□□□ 1.67
SSR4-203ENST00000370086 ABCA10Q8WWZ4 1543 aa25.42■■□□□ 1.66
SSR4-203ENST00000370086 PBRM1Q86U86 1689 aa25.4■■□□□ 1.66
SSR4-203ENST00000370086 SNAPC4Q5SXM2 1469 aa25.4■■□□□ 1.66
SSR4-203ENST00000370086 ABCA5Q8WWZ7 1642 aa25.38■■□□□ 1.65
SSR4-203ENST00000370086 GRIN2BQ13224 1484 aa25.38■■□□□ 1.65
SSR4-203ENST00000370086 GAPVD1Q14C86 1478 aa25.36■■□□□ 1.65
SSR4-203ENST00000370086 FBLN2P98095 1184 aa25.33■■□□□ 1.65
SSR4-203ENST00000370086 MAGI1Q96QZ7 1491 aaPredicted RBP25.33■■□□□ 1.65
SSR4-203ENST00000370086 RIMBP3CA6NJZ7 1639 aa25.25■■□□□ 1.63
SSR4-203ENST00000370086 RIMBP3BA6NNM3 1639 aa25.25■■□□□ 1.63
SSR4-203ENST00000370086 RIMBP3Q9UFD9 1639 aa25.25■■□□□ 1.63
SSR4-203ENST00000370086 SYNJ2O15056 1496 aa25.23■■□□□ 1.63
SSR4-203ENST00000370086 CHMP7Q8WUX9 453 aaPredicted RBP25.22■■□□□ 1.63
SSR4-203ENST00000370086 TRIM41Q8WV44 630 aa25.19■■□□□ 1.62
SSR4-203ENST00000370086 ARHGEF11O15085 1522 aa25.18■■□□□ 1.62
SSR4-203ENST00000370086 CLASP1Q7Z460 1538 aa25.15■■□□□ 1.62
SSR4-203ENST00000370086 ADAMTS12P58397 1594 aa25.14■■□□□ 1.61
SSR4-203ENST00000370086 ERICH3Q5RHP9 1530 aa25.12■■□□□ 1.61
SSR4-203ENST00000370086 GRIN2AQ12879 1464 aa25.06■■□□□ 1.6
SSR4-203ENST00000370086 FHAD1B1AJZ9 1412 aa25.04■■□□□ 1.6
SSR4-203ENST00000370086 CEP170Q5SW79 1584 aa24.99■■□□□ 1.59
SSR4-203ENST00000370086 ARAP1Q96P48 1450 aa24.97■■□□□ 1.59
SSR4-203ENST00000370086 NUP160Q12769 1436 aa24.95■■□□□ 1.59
SSR4-203ENST00000370086 KIF27Q86VH2 1401 aa24.95■■□□□ 1.59
SSR4-203ENST00000370086 CYB5RLQ6IPT4 315 aa24.94■■□□□ 1.58
SSR4-203ENST00000370086 IGF1RP08069 1367 aa24.91■■□□□ 1.58
SSR4-203ENST00000370086 CUL7Q14999 1698 aa24.87■■□□□ 1.57
SSR4-203ENST00000370086 SHROOM2Q13796 1616 aa24.83■■□□□ 1.57
SSR4-203ENST00000370086 ERCC6L2Q5T890 1561 aa24.82■■□□□ 1.56
SSR4-203ENST00000370086 RUSC2Q8N2Y8 1516 aa24.77■■□□□ 1.56
SSR4-203ENST00000370086 CARMIL1Q5VZK9 1371 aa24.74■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms