RNA–Protein interactions for RNA: ENST00000368908.9

LYSMD1-201, Transcript of LysM domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LYSMD1, Length 2,479 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD1-201ENST00000368908 NISCHQ9Y2I1 1504 aa21.23■□□□□ 0.99
LYSMD1-201ENST00000368908 CCDC180Q9P1Z9 1646 aa18.9■□□□□ 0.62
LYSMD1-201ENST00000368908 ABCC9O60706 1549 aa18.13■□□□□ 0.49
LYSMD1-201ENST00000368908 ZCCHC6Q5VYS8 1495 aaKnown RBP17.75■□□□□ 0.43
LYSMD1-201ENST00000368908 HRCP23327 699 aa17.72■□□□□ 0.43
LYSMD1-201ENST00000368908 MYO15BQ96JP2 1530 aa17.69■□□□□ 0.42
LYSMD1-201ENST00000368908 NACADO15069 1562 aa17.69■□□□□ 0.42
LYSMD1-201ENST00000368908 DCAF1Q9Y4B6 1507 aa17.66■□□□□ 0.42
LYSMD1-201ENST00000368908 RB1CC1Q8TDY2 1594 aa17.64■□□□□ 0.41
LYSMD1-201ENST00000368908 SHROOM4Q9ULL8 1493 aa17.58■□□□□ 0.4
LYSMD1-201ENST00000368908 SUPT5HO00267 1087 aaKnown RBP17.46■□□□□ 0.39
LYSMD1-201ENST00000368908 DCAF8L2P0C7V8 631 aa17.45■□□□□ 0.38
LYSMD1-201ENST00000368908 CHIC1Q5VXU3 224 aa17.34■□□□□ 0.37
LYSMD1-201ENST00000368908 UNC13AQ9UPW8 1703 aa17.23■□□□□ 0.35
LYSMD1-201ENST00000368908 PCGF6Q9BYE7 350 aa17.23■□□□□ 0.35
LYSMD1-201ENST00000368908 SCRIBQ14160 1630 aa17.12■□□□□ 0.33
LYSMD1-201ENST00000368908 PPARGC1BQ86YN6 1023 aaKnown RBP17.11■□□□□ 0.33
LYSMD1-201ENST00000368908 PELP1Q8IZL8 1130 aaKnown RBP17.08■□□□□ 0.33
LYSMD1-201ENST00000368908 BICRAQ9NZM4 1560 aa17.07■□□□□ 0.32
LYSMD1-201ENST00000368908 TRIM26Q12899 539 aaPredicted RBP16.91■□□□□ 0.3
LYSMD1-201ENST00000368908 PABPN1Q86U42 306 aaKnown RBP eCLIP16.91■□□□□ 0.3
LYSMD1-201ENST00000368908 ZEB1P37275 1124 aaPredicted RBP16.85■□□□□ 0.29
LYSMD1-201ENST00000368908 LOC105371045A0A1W2PR82 267 aa16.74■□□□□ 0.27
LYSMD1-201ENST00000368908 EIF4G1Q04637 1599 aaKnown RBP16.6■□□□□ 0.25
LYSMD1-201ENST00000368908 SCAF1Q9H7N4 1312 aaKnown RBP16.6■□□□□ 0.25
LYSMD1-201ENST00000368908 CC2D2AQ9P2K1 1620 aa16.48■□□□□ 0.23
LYSMD1-201ENST00000368908 BAZ1AQ9NRL2 1556 aaPredicted RBP16.46■□□□□ 0.23
LYSMD1-201ENST00000368908 MYT1Q01538 1121 aa16.45■□□□□ 0.22
LYSMD1-201ENST00000368908 SMARCA4P51532 1647 aa16.45■□□□□ 0.22
LYSMD1-201ENST00000368908 CECR2Q9BXF3 1484 aa16.44■□□□□ 0.22
LYSMD1-201ENST00000368908 DNAJC5BQ9UF47 199 aa16.42■□□□□ 0.22
LYSMD1-201ENST00000368908 RSF1Q96T23 1441 aaPredicted RBP16.34■□□□□ 0.21
LYSMD1-201ENST00000368908 PEG3Q9GZU2 1588 aa16.34■□□□□ 0.21
LYSMD1-201ENST00000368908 SMARCA2P51531 1590 aa16.33■□□□□ 0.2
LYSMD1-201ENST00000368908 MROH2BQ7Z745 1585 aa16.32■□□□□ 0.2
LYSMD1-201ENST00000368908 ACIN1Q9UKV3 1341 aaKnown RBP16.31■□□□□ 0.2
LYSMD1-201ENST00000368908 TRIM41Q8WV44 630 aa16.29■□□□□ 0.2
LYSMD1-201ENST00000368908 ATAD2BQ9ULI0 1458 aa16.28■□□□□ 0.2
LYSMD1-201ENST00000368908 NCAPD3P42695 1498 aa16.28■□□□□ 0.2
LYSMD1-201ENST00000368908 HMGXB3Q12766 1538 aa16.25■□□□□ 0.19
LYSMD1-201ENST00000368908 NEUROD1Q13562 356 aa16.17■□□□□ 0.18
LYSMD1-201ENST00000368908 CENPBP07199 599 aaPredicted RBP16.16■□□□□ 0.18
LYSMD1-201ENST00000368908 BAZ1BQ9UIG0 1483 aaKnown RBP16.16■□□□□ 0.18
LYSMD1-201ENST00000368908 WIZO95785 1651 aa16.16■□□□□ 0.18
LYSMD1-201ENST00000368908 FAM9AQ8IZU1 332 aaPredicted RBP16.08■□□□□ 0.16
LYSMD1-201ENST00000368908 GTF3C3Q9Y5Q9 886 aa16.07■□□□□ 0.16
LYSMD1-201ENST00000368908 TOP2AP11388 1531 aaKnown RBP16.07■□□□□ 0.16
LYSMD1-201ENST00000368908 DIEXFQ68CQ4 756 aaKnown RBP16.05■□□□□ 0.16
LYSMD1-201ENST00000368908 CCER1Q8TC90 406 aaPredicted RBP16.04■□□□□ 0.16
LYSMD1-201ENST00000368908 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.01■□□□□ 0.15
LYSMD1-201ENST00000368908 WRNQ14191 1432 aaPredicted RBP eCLIP16■□□□□ 0.15
LYSMD1-201ENST00000368908 LAMC3Q9Y6N6 1575 aa15.85■□□□□ 0.13
LYSMD1-201ENST00000368908 ZNF316A6NFI3 1004 aaPredicted RBP15.83■□□□□ 0.12
LYSMD1-201ENST00000368908 EHMT2Q96KQ7 1210 aa15.83■□□□□ 0.12
LYSMD1-201ENST00000368908 CCDC88BA6NC98 1476 aa15.81■□□□□ 0.12
LYSMD1-201ENST00000368908 CEP162Q5TB80 1403 aa15.78■□□□□ 0.12
LYSMD1-201ENST00000368908 CADPSQ9ULU8 1353 aa15.78■□□□□ 0.12
LYSMD1-201ENST00000368908 TNIKQ9UKE5 1360 aa15.75■□□□□ 0.11
LYSMD1-201ENST00000368908 CFTRP13569 1480 aa15.75■□□□□ 0.11
LYSMD1-201ENST00000368908 PRDM2Q13029 1718 aa15.74■□□□□ 0.11
LYSMD1-201ENST00000368908 NESP48681 1621 aa15.74■□□□□ 0.11
LYSMD1-201ENST00000368908 EEA1Q15075 1411 aa15.72■□□□□ 0.11
LYSMD1-201ENST00000368908 PDS5BQ9NTI5 1447 aa15.69■□□□□ 0.1
LYSMD1-201ENST00000368908 CLSPNQ9HAW4 1339 aa15.67■□□□□ 0.1
LYSMD1-201ENST00000368908 ERCC6Q03468 1493 aa15.64■□□□□ 0.09
LYSMD1-201ENST00000368908 KIF21AQ7Z4S6 1674 aa15.64■□□□□ 0.09
LYSMD1-201ENST00000368908 ABCC8Q09428 1581 aa15.63■□□□□ 0.09
LYSMD1-201ENST00000368908 MIER1Q8N108 512 aa15.6■□□□□ 0.09
LYSMD1-201ENST00000368908 FANCD2Q9BXW9 1451 aa15.59■□□□□ 0.09
LYSMD1-201ENST00000368908 GOLGA3Q08378 1498 aa15.59■□□□□ 0.09
LYSMD1-201ENST00000368908 YTHDC1Q96MU7 727 aaKnown RBP15.59■□□□□ 0.09
LYSMD1-201ENST00000368908 CEP164Q9UPV0 1460 aa15.58■□□□□ 0.08
LYSMD1-201ENST00000368908 THOC2Q8NI27 1593 aaKnown RBP15.57■□□□□ 0.08
LYSMD1-201ENST00000368908 SOGA1O94964 1423 aa15.55■□□□□ 0.08
LYSMD1-201ENST00000368908 MRC2Q9UBG0 1479 aa15.54■□□□□ 0.08
LYSMD1-201ENST00000368908 KIF21BO75037 1637 aa15.51■□□□□ 0.07
LYSMD1-201ENST00000368908 CSRNP3Q8WYN3 585 aa15.51■□□□□ 0.07
LYSMD1-201ENST00000368908 CUX2O14529 1486 aa15.51■□□□□ 0.07
LYSMD1-201ENST00000368908 WDR62O43379 1518 aa15.5■□□□□ 0.07
LYSMD1-201ENST00000368908 TTBK1Q5TCY1 1321 aaPredicted RBP15.5■□□□□ 0.07
LYSMD1-201ENST00000368908 RUSC2Q8N2Y8 1516 aa15.44■□□□□ 0.06
LYSMD1-201ENST00000368908 URB2Q14146 1524 aaKnown RBP15.43■□□□□ 0.06
LYSMD1-201ENST00000368908 UBTFP17480 764 aaKnown RBP15.42■□□□□ 0.06
LYSMD1-201ENST00000368908 VPS8Q8N3P4 1428 aa15.42■□□□□ 0.06
LYSMD1-201ENST00000368908 DNMBPQ6XZF7 1577 aa15.42■□□□□ 0.06
LYSMD1-201ENST00000368908 SUPT16HQ9Y5B9 1047 aaKnown RBP15.4■□□□□ 0.06
LYSMD1-201ENST00000368908 TOPBP1Q92547 1522 aa15.38■□□□□ 0.05
LYSMD1-201ENST00000368908 CLIP1P30622 1438 aa15.37■□□□□ 0.05
LYSMD1-201ENST00000368908 HNRNPUL2Q1KMD3 747 aaKnown RBP15.36■□□□□ 0.05
LYSMD1-201ENST00000368908 ANP32EQ9BTT0 268 aa15.32■□□□□ 0.04
LYSMD1-201ENST00000368908 CUX1P39880 1505 aa15.32■□□□□ 0.04
LYSMD1-201ENST00000368908 TSHZ2Q9NRE2 1034 aa15.3■□□□□ 0.04
LYSMD1-201ENST00000368908 BIVM-ERCC5R4GMW8 1640 aa15.3■□□□□ 0.04
LYSMD1-201ENST00000368908 DHX57Q6P158 1386 aaKnown RBP15.29■□□□□ 0.04
LYSMD1-201ENST00000368908 SYNJ1O43426 1573 aa15.28■□□□□ 0.04
LYSMD1-201ENST00000368908 TOP2BQ02880 1626 aa15.27■□□□□ 0.04
LYSMD1-201ENST00000368908 IFT140Q96RY7 1462 aa15.27■□□□□ 0.03
LYSMD1-201ENST00000368908 POLA1P09884 1462 aaPredicted RBP15.25■□□□□ 0.03
LYSMD1-201ENST00000368908 APLP2Q06481 763 aa15.24■□□□□ 0.03
LYSMD1-201ENST00000368908 FGD5Q6ZNL6 1462 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms