RNA–Protein interactions for RNA: ENST00000368687.1

CHTOP-202, Transcript of chromatin target of PRMT1, humanhuman

TSL 1 (best) BASIC

Gene CHTOP, Length 1,094 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHTOP-202ENST00000368687 NISCHQ9Y2I1 1504 aa44.96■■■■■ 4.79
CHTOP-202ENST00000368687 CCDC180Q9P1Z9 1646 aa40.1■■■■■ 4.01
CHTOP-202ENST00000368687 ABCC9O60706 1549 aa39.35■■■■□ 3.89
CHTOP-202ENST00000368687 RB1CC1Q8TDY2 1594 aa37.72■■■■□ 3.63
CHTOP-202ENST00000368687 NACADO15069 1562 aa37.68■■■■□ 3.62
CHTOP-202ENST00000368687 MYO15BQ96JP2 1530 aa37.51■■■■□ 3.59
CHTOP-202ENST00000368687 ZCCHC6Q5VYS8 1495 aaKnown RBP37.46■■■■□ 3.59
CHTOP-202ENST00000368687 DCAF8L2P0C7V8 631 aa37.42■■■■□ 3.58
CHTOP-202ENST00000368687 DCAF1Q9Y4B6 1507 aa37.31■■■■□ 3.56
CHTOP-202ENST00000368687 UNC13AQ9UPW8 1703 aa36.78■■■■□ 3.48
CHTOP-202ENST00000368687 PABPN1Q86U42 306 aaKnown RBP eCLIP36.73■■■■□ 3.47
CHTOP-202ENST00000368687 DNAJC5BQ9UF47 199 aa36.57■■■■□ 3.44
CHTOP-202ENST00000368687 BICRAQ9NZM4 1560 aa36.55■■■■□ 3.44
CHTOP-202ENST00000368687 SCRIBQ14160 1630 aa36.43■■■■□ 3.42
CHTOP-202ENST00000368687 SHROOM4Q9ULL8 1493 aa36.31■■■■□ 3.4
CHTOP-202ENST00000368687 EIF4G1Q04637 1599 aaKnown RBP35.59■■■■□ 3.29
CHTOP-202ENST00000368687 CC2D2AQ9P2K1 1620 aa35.55■■■■□ 3.28
CHTOP-202ENST00000368687 CECR2Q9BXF3 1484 aa35.39■■■■□ 3.26
CHTOP-202ENST00000368687 BAZ1AQ9NRL2 1556 aaPredicted RBP34.91■■■■□ 3.18
CHTOP-202ENST00000368687 SMARCA4P51532 1647 aa34.9■■■■□ 3.18
CHTOP-202ENST00000368687 SMARCA2P51531 1590 aa34.75■■■■□ 3.15
CHTOP-202ENST00000368687 NCAPD3P42695 1498 aa34.71■■■■□ 3.15
CHTOP-202ENST00000368687 ATAD2BQ9ULI0 1458 aa34.68■■■■□ 3.14
CHTOP-202ENST00000368687 PEG3Q9GZU2 1588 aa34.62■■■■□ 3.13
CHTOP-202ENST00000368687 HMGXB3Q12766 1538 aa34.6■■■■□ 3.13
CHTOP-202ENST00000368687 MROH2BQ7Z745 1585 aa34.57■■■■□ 3.13
CHTOP-202ENST00000368687 BAZ1BQ9UIG0 1483 aaKnown RBP34.44■■■■□ 3.1
CHTOP-202ENST00000368687 WIZO95785 1651 aa34.21■■■■□ 3.07
CHTOP-202ENST00000368687 RSF1Q96T23 1441 aaPredicted RBP34.19■■■■□ 3.06
CHTOP-202ENST00000368687 NESP48681 1621 aa33.96■■■■□ 3.03
CHTOP-202ENST00000368687 TOP2AP11388 1531 aaKnown RBP33.94■■■■□ 3.02
CHTOP-202ENST00000368687 ERCC6Q03468 1493 aa33.91■■■■□ 3.02
CHTOP-202ENST00000368687 LAMC3Q9Y6N6 1575 aa33.85■■■■□ 3.01
CHTOP-202ENST00000368687 CUX2O14529 1486 aa33.69■■■□□ 2.98
CHTOP-202ENST00000368687 CADPSQ9ULU8 1353 aa33.68■■■□□ 2.98
CHTOP-202ENST00000368687 PDS5BQ9NTI5 1447 aa33.61■■■□□ 2.97
CHTOP-202ENST00000368687 THOC2Q8NI27 1593 aaKnown RBP33.49■■■□□ 2.95
CHTOP-202ENST00000368687 CFTRP13569 1480 aa33.49■■■□□ 2.95
CHTOP-202ENST00000368687 KIF21AQ7Z4S6 1674 aa33.47■■■□□ 2.95
CHTOP-202ENST00000368687 CCDC88BA6NC98 1476 aa33.45■■■□□ 2.95
CHTOP-202ENST00000368687 PRDM2Q13029 1718 aa33.34■■■□□ 2.93
CHTOP-202ENST00000368687 CEP164Q9UPV0 1460 aa33.29■■■□□ 2.92
CHTOP-202ENST00000368687 FANCD2Q9BXW9 1451 aa33.28■■■□□ 2.92
CHTOP-202ENST00000368687 MRC2Q9UBG0 1479 aa33.23■■■□□ 2.91
CHTOP-202ENST00000368687 SUPT5HO00267 1087 aaKnown RBP33.22■■■□□ 2.91
CHTOP-202ENST00000368687 DNAJC5Q9H3Z4 198 aa33.18■■■□□ 2.9
CHTOP-202ENST00000368687 WDR62O43379 1518 aa33.14■■■□□ 2.9
CHTOP-202ENST00000368687 URB2Q14146 1524 aaKnown RBP32.92■■■□□ 2.86
CHTOP-202ENST00000368687 ABCC8Q09428 1581 aa32.87■■■□□ 2.85
CHTOP-202ENST00000368687 DNMBPQ6XZF7 1577 aa32.75■■■□□ 2.83
CHTOP-202ENST00000368687 TOPBP1Q92547 1522 aa32.75■■■□□ 2.83
CHTOP-202ENST00000368687 IFT140Q96RY7 1462 aa32.6■■■□□ 2.81
CHTOP-202ENST00000368687 POLA1P09884 1462 aaPredicted RBP32.46■■■□□ 2.79
CHTOP-202ENST00000368687 CUX1P39880 1505 aa32.46■■■□□ 2.79
CHTOP-202ENST00000368687 ZNF608Q9ULD9 1512 aaPredicted RBP32.46■■■□□ 2.79
CHTOP-202ENST00000368687 TARBP1Q13395 1621 aaKnown RBP32.4■■■□□ 2.78
CHTOP-202ENST00000368687 FGD5Q6ZNL6 1462 aa32.37■■■□□ 2.77
CHTOP-202ENST00000368687 SOGA1O94964 1423 aa32.32■■■□□ 2.76
CHTOP-202ENST00000368687 WDR97A6NE52 1622 aa32.31■■■□□ 2.76
CHTOP-202ENST00000368687 EIF4G3O43432 1585 aaKnown RBP32.29■■■□□ 2.76
CHTOP-202ENST00000368687 WRNQ14191 1432 aaPredicted RBP eCLIP32.29■■■□□ 2.76
CHTOP-202ENST00000368687 BIVM-ERCC5R4GMW8 1640 aa32.26■■■□□ 2.76
CHTOP-202ENST00000368687 TOP2BQ02880 1626 aa32.26■■■□□ 2.75
CHTOP-202ENST00000368687 RAD54L2Q9Y4B4 1467 aa32.23■■■□□ 2.75
CHTOP-202ENST00000368687 OSCARQ8IYS5 282 aa32.22■■■□□ 2.75
CHTOP-202ENST00000368687 AQRO60306 1485 aaKnown RBP eCLIP32.2■■■□□ 2.755e-9■■■■■ 42.9
CHTOP-202ENST00000368687 SYNJ1O43426 1573 aa32.16■■■□□ 2.74
CHTOP-202ENST00000368687 ABCA10Q8WWZ4 1543 aa32.11■■■□□ 2.73
CHTOP-202ENST00000368687 TDRD9Q8NDG6 1382 aaKnown RBP32.07■■■□□ 2.73
CHTOP-202ENST00000368687 GRIN2BQ13224 1484 aa32■■■□□ 2.71
CHTOP-202ENST00000368687 ABCA5Q8WWZ7 1642 aa31.98■■■□□ 2.71
CHTOP-202ENST00000368687 GAPVD1Q14C86 1478 aa31.97■■■□□ 2.71
CHTOP-202ENST00000368687 MAGI1Q96QZ7 1491 aaPredicted RBP31.96■■■□□ 2.71
CHTOP-202ENST00000368687 PBRM1Q86U86 1689 aa31.94■■■□□ 2.7
CHTOP-202ENST00000368687 TRIM41Q8WV44 630 aa31.91■■■□□ 2.7
CHTOP-202ENST00000368687 SNAPC4Q5SXM2 1469 aa31.91■■■□□ 2.7
CHTOP-202ENST00000368687 CHD1O14646 1710 aa31.89■■■□□ 2.7
CHTOP-202ENST00000368687 FBLN2P98095 1184 aa31.85■■■□□ 2.69
CHTOP-202ENST00000368687 SYNJ2O15056 1496 aa31.8■■■□□ 2.68
CHTOP-202ENST00000368687 ERICH3Q5RHP9 1530 aa31.77■■■□□ 2.68
CHTOP-202ENST00000368687 RIMBP3CA6NJZ7 1639 aa31.77■■■□□ 2.68
CHTOP-202ENST00000368687 RIMBP3BA6NNM3 1639 aa31.77■■■□□ 2.68
CHTOP-202ENST00000368687 RIMBP3Q9UFD9 1639 aa31.77■■■□□ 2.68
CHTOP-202ENST00000368687 CHMP7Q8WUX9 453 aaPredicted RBP31.74■■■□□ 2.67
CHTOP-202ENST00000368687 ARHGEF11O15085 1522 aa31.74■■■□□ 2.67
CHTOP-202ENST00000368687 ADAMTS12P58397 1594 aa31.68■■■□□ 2.66
CHTOP-202ENST00000368687 KIF27Q86VH2 1401 aa31.66■■■□□ 2.66
CHTOP-202ENST00000368687 FHAD1B1AJZ9 1412 aa31.63■■■□□ 2.65
CHTOP-202ENST00000368687 CLASP1Q7Z460 1538 aa31.59■■■□□ 2.65
CHTOP-202ENST00000368687 GRIN2AQ12879 1464 aa31.57■■■□□ 2.64
CHTOP-202ENST00000368687 CUL7Q14999 1698 aa31.51■■■□□ 2.63
CHTOP-202ENST00000368687 ARAP1Q96P48 1450 aa31.48■■■□□ 2.63
CHTOP-202ENST00000368687 CYB5RLQ6IPT4 315 aa31.46■■■□□ 2.63
CHTOP-202ENST00000368687 IGF1RP08069 1367 aa31.43■■■□□ 2.62
CHTOP-202ENST00000368687 NUP160Q12769 1436 aa31.43■■■□□ 2.62
CHTOP-202ENST00000368687 CEP170Q5SW79 1584 aa31.37■■■□□ 2.61
CHTOP-202ENST00000368687 CARMIL1Q5VZK9 1371 aa31.29■■■□□ 2.6
CHTOP-202ENST00000368687 SHROOM2Q13796 1616 aa31.22■■■□□ 2.59
CHTOP-202ENST00000368687 RUSC2Q8N2Y8 1516 aa31.21■■■□□ 2.59
CHTOP-202ENST00000368687 ERCC6L2Q5T890 1561 aa31.17■■■□□ 2.58
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms