RNA–Protein interactions for RNA: ENST00000367569.3

SF3B5-201, Transcript of splicing factor 3b subunit 5, humanhuman

APPRIS P1 BASIC

Gene SF3B5, Length 693 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B5-201ENST00000367569 NISCHQ9Y2I1 1504 aa35.89■■■■□ 3.34
SF3B5-201ENST00000367569 CCDC180Q9P1Z9 1646 aa32.15■■■□□ 2.74
SF3B5-201ENST00000367569 ABCC9O60706 1549 aa32.14■■■□□ 2.74
SF3B5-201ENST00000367569 RB1CC1Q8TDY2 1594 aa30.58■■■□□ 2.49
SF3B5-201ENST00000367569 NACADO15069 1562 aa30.38■■■□□ 2.45
SF3B5-201ENST00000367569 DCAF8L2P0C7V8 631 aa30.3■■■□□ 2.44
SF3B5-201ENST00000367569 DNAJC5BQ9UF47 199 aa30.15■■■□□ 2.42
SF3B5-201ENST00000367569 MYO15BQ96JP2 1530 aa29.97■■■□□ 2.39
SF3B5-201ENST00000367569 PABPN1Q86U42 306 aaKnown RBP eCLIP29.96■■■□□ 2.39
SF3B5-201ENST00000367569 UNC13AQ9UPW8 1703 aa29.93■■■□□ 2.38
SF3B5-201ENST00000367569 ZCCHC6Q5VYS8 1495 aaKnown RBP29.84■■■□□ 2.37
SF3B5-201ENST00000367569 BICRAQ9NZM4 1560 aa29.73■■■□□ 2.35
SF3B5-201ENST00000367569 DCAF1Q9Y4B6 1507 aa29.62■■■□□ 2.33
SF3B5-201ENST00000367569 SCRIBQ14160 1630 aa29.33■■■□□ 2.29
SF3B5-201ENST00000367569 SHROOM4Q9ULL8 1493 aa29.26■■■□□ 2.27
SF3B5-201ENST00000367569 CC2D2AQ9P2K1 1620 aa29.02■■■□□ 2.24
SF3B5-201ENST00000367569 EIF4G1Q04637 1599 aaKnown RBP28.97■■■□□ 2.23
SF3B5-201ENST00000367569 CECR2Q9BXF3 1484 aa28.93■■■□□ 2.22
SF3B5-201ENST00000367569 NCAPD3P42695 1498 aa28.07■■■□□ 2.08
SF3B5-201ENST00000367569 ATAD2BQ9ULI0 1458 aa28■■■□□ 2.07
SF3B5-201ENST00000367569 SMARCA4P51532 1647 aa27.98■■■□□ 2.07
SF3B5-201ENST00000367569 SMARCA2P51531 1590 aa27.9■■■□□ 2.06
SF3B5-201ENST00000367569 HMGXB3Q12766 1538 aa27.84■■■□□ 2.05
SF3B5-201ENST00000367569 BAZ1AQ9NRL2 1556 aaPredicted RBP27.83■■■□□ 2.05
SF3B5-201ENST00000367569 ERCC6Q03468 1493 aa27.71■■■□□ 2.03
SF3B5-201ENST00000367569 BAZ1BQ9UIG0 1483 aaKnown RBP27.71■■■□□ 2.03
SF3B5-201ENST00000367569 PEG3Q9GZU2 1588 aa27.69■■■□□ 2.02
SF3B5-201ENST00000367569 MROH2BQ7Z745 1585 aa27.67■■■□□ 2.02
SF3B5-201ENST00000367569 NESP48681 1621 aa27.64■■■□□ 2.02
SF3B5-201ENST00000367569 CUX2O14529 1486 aa27.64■■■□□ 2.01
SF3B5-201ENST00000367569 DNAJC5Q9H3Z4 198 aa27.6■■■□□ 2.01
SF3B5-201ENST00000367569 WIZO95785 1651 aa27.44■■□□□ 1.98
SF3B5-201ENST00000367569 LAMC3Q9Y6N6 1575 aa27.41■■□□□ 1.98
SF3B5-201ENST00000367569 THOC2Q8NI27 1593 aaKnown RBP27.31■■□□□ 1.96
SF3B5-201ENST00000367569 KIF21AQ7Z4S6 1674 aa27.27■■□□□ 1.96
SF3B5-201ENST00000367569 PDS5BQ9NTI5 1447 aa27.25■■□□□ 1.95
SF3B5-201ENST00000367569 RSF1Q96T23 1441 aaPredicted RBP27.23■■□□□ 1.95
SF3B5-201ENST00000367569 CADPSQ9ULU8 1353 aa27.22■■□□□ 1.95
SF3B5-201ENST00000367569 TOP2AP11388 1531 aaKnown RBP27.05■■□□□ 1.92
SF3B5-201ENST00000367569 MRC2Q9UBG0 1479 aa27.02■■□□□ 1.92
SF3B5-201ENST00000367569 WDR62O43379 1518 aa26.95■■□□□ 1.91
SF3B5-201ENST00000367569 CFTRP13569 1480 aa26.93■■□□□ 1.9
SF3B5-201ENST00000367569 CEP164Q9UPV0 1460 aa26.92■■□□□ 1.9
SF3B5-201ENST00000367569 FANCD2Q9BXW9 1451 aa26.91■■□□□ 1.9
SF3B5-201ENST00000367569 CCDC88BA6NC98 1476 aa26.7■■□□□ 1.87
SF3B5-201ENST00000367569 URB2Q14146 1524 aaKnown RBP26.7■■□□□ 1.86
SF3B5-201ENST00000367569 PRDM2Q13029 1718 aa26.64■■□□□ 1.85
SF3B5-201ENST00000367569 SUPT5HO00267 1087 aaKnown RBP26.59■■□□□ 1.85
SF3B5-201ENST00000367569 TRIM41Q8WV44 630 aa26.42■■□□□ 1.82
SF3B5-201ENST00000367569 TOPBP1Q92547 1522 aa26.41■■□□□ 1.82
SF3B5-201ENST00000367569 OSCARQ8IYS5 282 aa26.41■■□□□ 1.82
SF3B5-201ENST00000367569 IFT140Q96RY7 1462 aa26.38■■□□□ 1.81
SF3B5-201ENST00000367569 ZNF608Q9ULD9 1512 aaPredicted RBP26.37■■□□□ 1.81
SF3B5-201ENST00000367569 ABCC8Q09428 1581 aa26.33■■□□□ 1.8
SF3B5-201ENST00000367569 DNMBPQ6XZF7 1577 aa26.31■■□□□ 1.8
SF3B5-201ENST00000367569 EIF4G3O43432 1585 aaKnown RBP26.2■■□□□ 1.78
SF3B5-201ENST00000367569 TARBP1Q13395 1621 aaKnown RBP26.18■■□□□ 1.78
SF3B5-201ENST00000367569 AQRO60306 1485 aaKnown RBP eCLIP26.15■■□□□ 1.78
SF3B5-201ENST00000367569 POLA1P09884 1462 aaPredicted RBP26.15■■□□□ 1.78
SF3B5-201ENST00000367569 RAD54L2Q9Y4B4 1467 aa26.08■■□□□ 1.77
SF3B5-201ENST00000367569 RIMBP3CA6NJZ7 1639 aa26.06■■□□□ 1.76
SF3B5-201ENST00000367569 RIMBP3BA6NNM3 1639 aa26.06■■□□□ 1.76
SF3B5-201ENST00000367569 RIMBP3Q9UFD9 1639 aa26.06■■□□□ 1.76
SF3B5-201ENST00000367569 SOGA1O94964 1423 aa26.04■■□□□ 1.76
SF3B5-201ENST00000367569 CHD1O14646 1710 aa26■■□□□ 1.75
SF3B5-201ENST00000367569 FGD5Q6ZNL6 1462 aa25.99■■□□□ 1.75
SF3B5-201ENST00000367569 TDRD9Q8NDG6 1382 aaKnown RBP25.99■■□□□ 1.75
SF3B5-201ENST00000367569 ARHGEF11O15085 1522 aa25.98■■□□□ 1.75
SF3B5-201ENST00000367569 CUX1P39880 1505 aa25.98■■□□□ 1.75
SF3B5-201ENST00000367569 FBLN2P98095 1184 aa25.96■■□□□ 1.75
SF3B5-201ENST00000367569 WDR97A6NE52 1622 aa25.86■■□□□ 1.73
SF3B5-201ENST00000367569 SNAPC4Q5SXM2 1469 aa25.85■■□□□ 1.73
SF3B5-201ENST00000367569 CYB5RLQ6IPT4 315 aa25.82■■□□□ 1.72
SF3B5-201ENST00000367569 GRIN2BQ13224 1484 aa25.79■■□□□ 1.72
SF3B5-201ENST00000367569 SYNJ1O43426 1573 aa25.78■■□□□ 1.72
SF3B5-201ENST00000367569 MAGI1Q96QZ7 1491 aaPredicted RBP25.77■■□□□ 1.72
SF3B5-201ENST00000367569 CHMP7Q8WUX9 453 aaPredicted RBP25.76■■□□□ 1.71
SF3B5-201ENST00000367569 ARAP1Q96P48 1450 aa25.74■■□□□ 1.71
SF3B5-201ENST00000367569 BIVM-ERCC5R4GMW8 1640 aa25.74■■□□□ 1.71
SF3B5-201ENST00000367569 GAPVD1Q14C86 1478 aa25.71■■□□□ 1.71
SF3B5-201ENST00000367569 CLASP1Q7Z460 1538 aa25.7■■□□□ 1.7
SF3B5-201ENST00000367569 WRNQ14191 1432 aaPredicted RBP eCLIP25.7■■□□□ 1.7
SF3B5-201ENST00000367569 ABCA10Q8WWZ4 1543 aa25.69■■□□□ 1.7
SF3B5-201ENST00000367569 PBRM1Q86U86 1689 aa25.69■■□□□ 1.7
SF3B5-201ENST00000367569 SYNJ2O15056 1496 aa25.69■■□□□ 1.7
SF3B5-201ENST00000367569 TOP2BQ02880 1626 aa25.69■■□□□ 1.7
SF3B5-201ENST00000367569 ABCA5Q8WWZ7 1642 aa25.65■■□□□ 1.7
SF3B5-201ENST00000367569 TRHP20396 242 aaPredicted RBP25.49■■□□□ 1.67
SF3B5-201ENST00000367569 GRIN2AQ12879 1464 aa25.46■■□□□ 1.67
SF3B5-201ENST00000367569 ADAMTS12P58397 1594 aa25.44■■□□□ 1.66
SF3B5-201ENST00000367569 CEP170Q5SW79 1584 aa25.38■■□□□ 1.65
SF3B5-201ENST00000367569 FHAD1B1AJZ9 1412 aa25.37■■□□□ 1.65
SF3B5-201ENST00000367569 NUP160Q12769 1436 aa25.37■■□□□ 1.65
SF3B5-201ENST00000367569 ERICH3Q5RHP9 1530 aa25.36■■□□□ 1.65
SF3B5-201ENST00000367569 ERCC6L2Q5T890 1561 aa25.35■■□□□ 1.65
SF3B5-201ENST00000367569 SHROOM2Q13796 1616 aa25.26■■□□□ 1.63
SF3B5-201ENST00000367569 PRG4Q92954 1404 aaPredicted RBP25.13■■□□□ 1.61
SF3B5-201ENST00000367569 JPH4Q96JJ6 628 aa25.13■■□□□ 1.61
SF3B5-201ENST00000367569 KIF27Q86VH2 1401 aa25.11■■□□□ 1.61
SF3B5-201ENST00000367569 IGF1RP08069 1367 aa25.09■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms