RNA–Protein interactions for RNA: ENST00000366510.3

SCCPDH-201, Transcript of saccharopine dehydrogenase (putative), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCCPDH, Length 2,503 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCCPDH-201ENST00000366510 SUB1P53999 127 aaKnown RBP eCLIP20.28■□□□□ 0.845e-10■■■■■ 87.8
SCCPDH-201ENST00000366510 HNRNPMP52272 730 aaKnown RBP eCLIP35.67■■■■□ 3.38e-24■■■■■ 46.3
SCCPDH-201ENST00000366510 CPEB4Q17RY0 729 aaKnown RBP eCLIP23.14■■□□□ 1.38e-6■■■■■ 36.9
SCCPDH-201ENST00000366510 SDAD1Q9NVU7 687 aaKnown RBP eCLIP25.72■■□□□ 1.714e-6■■■■■ 36.8
SCCPDH-201ENST00000366510 TBRG4Q969Z0 631 aaKnown RBP eCLIP24.96■■□□□ 1.591e-6■■■■■ 31.4
SCCPDH-201ENST00000366510 LIN28BQ6ZN17 250 aaKnown RBP eCLIP25.37■■□□□ 1.652e-8■■■■■ 27.3
SCCPDH-201ENST00000366510 DKC1O60832 514 aaKnown RBP eCLIP27.23■■□□□ 1.958e-10■■■■■ 26.8
SCCPDH-201ENST00000366510 PTBP1P26599 531 aaKnown RBP eCLIP22.93■■□□□ 1.262e-8■■■■□ 25.7
SCCPDH-201ENST00000366510 TARDBPQ13148 414 aaKnown RBP eCLIP23.84■■□□□ 1.412e-6■■■■□ 22.2
SCCPDH-201ENST00000366510 U2AF2P26368 475 aaKnown RBP eCLIP29.28■■■□□ 2.283e-6■■■■□ 22
SCCPDH-201ENST00000366510 SF3B4Q15427 424 aaKnown RBP eCLIP22.97■■□□□ 1.274e-6■■■■□ 20.6
SCCPDH-201ENST00000366510 DDX3XO00571 662 aaKnown RBP eCLIP27.58■■■□□ 2.014e-29■■■■□ 20.3
SCCPDH-201ENST00000366510 RPS3P23396 243 aaKnown RBP eCLIP24.88■■□□□ 1.575e-7■■■■□ 19.8
SCCPDH-201ENST00000366510 YBX3P16989 372 aaKnown RBP eCLIP26.86■■□□□ 1.896e-7■■■■□ 19.4
SCCPDH-201ENST00000366510 EIF4G2P78344 907 aaKnown RBP eCLIP35.59■■■■□ 3.292e-7■■■■□ 19.4
SCCPDH-201ENST00000366510 GRWD1Q9BQ67 446 aaKnown RBP eCLIP35.21■■■■□ 3.231e-6■■■□□ 18
SCCPDH-201ENST00000366510 PPIGQ13427 754 aaKnown RBP eCLIP24.51■■□□□ 1.514e-7■■■□□ 15.6
SCCPDH-201ENST00000366510 EFTUD2Q15029 972 aaKnown RBP eCLIP26.48■■□□□ 1.833e-8■■□□□ 14.1
SCCPDH-201ENST00000366510 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP30.82■■■□□ 2.526e-7■■□□□ 12.1
SCCPDH-201ENST00000366510 AQRO60306 1485 aaKnown RBP eCLIP37.4■■■■□ 3.586e-7■■□□□ 11.9
SCCPDH-201ENST00000366510 BUD13Q9BRD0 619 aaKnown RBP eCLIP27.34■■□□□ 1.971e-6■□□□□ 10.7
SCCPDH-201ENST00000366510 MATR3P43243 847 aaKnown RBP eCLIP27.74■■■□□ 2.033e-6■□□□□ 9.6
SCCPDH-201ENST00000366510 G3BP1Q13283 466 aaKnown RBP eCLIP30.72■■■□□ 2.517e-6■□□□□ 8.9
Retrieved 23 of 23 RNA–protein pairs in 6.2 ms