RNA–Protein interactions for RNA: ENST00000366286.6

YBX3-203, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 704 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-203ENST00000366286 NISCHQ9Y2I1 1504 aa25.64■■□□□ 1.7
YBX3-203ENST00000366286 CCDC180Q9P1Z9 1646 aa22.98■■□□□ 1.27
YBX3-203ENST00000366286 ABCC9O60706 1549 aa22.55■■□□□ 1.2
YBX3-203ENST00000366286 RB1CC1Q8TDY2 1594 aa21.65■■□□□ 1.06
YBX3-203ENST00000366286 NACADO15069 1562 aa21.57■■□□□ 1.04
YBX3-203ENST00000366286 DCAF8L2P0C7V8 631 aa21.37■■□□□ 1.01
YBX3-203ENST00000366286 MYO15BQ96JP2 1530 aa21.36■■□□□ 1.01
YBX3-203ENST00000366286 ZCCHC6Q5VYS8 1495 aaKnown RBP21.36■■□□□ 1.01
YBX3-203ENST00000366286 UNC13AQ9UPW8 1703 aa21.3■■□□□ 1
YBX3-203ENST00000366286 DCAF1Q9Y4B6 1507 aa21.21■□□□□ 0.99
YBX3-203ENST00000366286 BICRAQ9NZM4 1560 aa21.02■□□□□ 0.96
YBX3-203ENST00000366286 PABPN1Q86U42 306 aaKnown RBP eCLIP20.96■□□□□ 0.95
YBX3-203ENST00000366286 SCRIBQ14160 1630 aa20.93■□□□□ 0.94
YBX3-203ENST00000366286 DNAJC5BQ9UF47 199 aa20.77■□□□□ 0.92
YBX3-203ENST00000366286 SHROOM4Q9ULL8 1493 aa20.75■□□□□ 0.91
YBX3-203ENST00000366286 EIF4G1Q04637 1599 aaKnown RBP20.46■□□□□ 0.87
YBX3-203ENST00000366286 CC2D2AQ9P2K1 1620 aa20.45■□□□□ 0.86
YBX3-203ENST00000366286 CECR2Q9BXF3 1484 aa20.27■□□□□ 0.84
YBX3-203ENST00000366286 SMARCA4P51532 1647 aa20■□□□□ 0.79
YBX3-203ENST00000366286 BAZ1AQ9NRL2 1556 aaPredicted RBP19.91■□□□□ 0.78
YBX3-203ENST00000366286 SMARCA2P51531 1590 aa19.86■□□□□ 0.77
YBX3-203ENST00000366286 ATAD2BQ9ULI0 1458 aa19.86■□□□□ 0.77
YBX3-203ENST00000366286 NCAPD3P42695 1498 aa19.84■□□□□ 0.77
YBX3-203ENST00000366286 HMGXB3Q12766 1538 aa19.81■□□□□ 0.76
YBX3-203ENST00000366286 PEG3Q9GZU2 1588 aa19.78■□□□□ 0.76
YBX3-203ENST00000366286 MROH2BQ7Z745 1585 aa19.78■□□□□ 0.76
YBX3-203ENST00000366286 BAZ1BQ9UIG0 1483 aaKnown RBP19.7■□□□□ 0.74
YBX3-203ENST00000366286 WIZO95785 1651 aa19.61■□□□□ 0.73
YBX3-203ENST00000366286 NESP48681 1621 aa19.47■□□□□ 0.71
YBX3-203ENST00000366286 ERCC6Q03468 1493 aa19.44■□□□□ 0.7
YBX3-203ENST00000366286 RSF1Q96T23 1441 aaPredicted RBP19.43■□□□□ 0.7
YBX3-203ENST00000366286 LAMC3Q9Y6N6 1575 aa19.42■□□□□ 0.7
YBX3-203ENST00000366286 TOP2AP11388 1531 aaKnown RBP19.36■□□□□ 0.69
YBX3-203ENST00000366286 KIF21AQ7Z4S6 1674 aa19.35■□□□□ 0.69
YBX3-203ENST00000366286 CUX2O14529 1486 aa19.31■□□□□ 0.68
YBX3-203ENST00000366286 THOC2Q8NI27 1593 aaKnown RBP19.3■□□□□ 0.68
YBX3-203ENST00000366286 CADPSQ9ULU8 1353 aa19.24■□□□□ 0.67
YBX3-203ENST00000366286 PDS5BQ9NTI5 1447 aa19.22■□□□□ 0.67
YBX3-203ENST00000366286 PRDM2Q13029 1718 aa19.17■□□□□ 0.66
YBX3-203ENST00000366286 CFTRP13569 1480 aa19.13■□□□□ 0.65
YBX3-203ENST00000366286 MRC2Q9UBG0 1479 aa19.09■□□□□ 0.65
YBX3-203ENST00000366286 CCDC88BA6NC98 1476 aa19.08■□□□□ 0.64
YBX3-203ENST00000366286 CEP164Q9UPV0 1460 aa19.08■□□□□ 0.64
YBX3-203ENST00000366286 FANCD2Q9BXW9 1451 aa19.07■□□□□ 0.64
YBX3-203ENST00000366286 WDR62O43379 1518 aa19.06■□□□□ 0.64
YBX3-203ENST00000366286 URB2Q14146 1524 aaKnown RBP18.92■□□□□ 0.62
YBX3-203ENST00000366286 DNAJC5Q9H3Z4 198 aa18.81■□□□□ 0.6
YBX3-203ENST00000366286 TOPBP1Q92547 1522 aa18.76■□□□□ 0.59
YBX3-203ENST00000366286 DNMBPQ6XZF7 1577 aa18.76■□□□□ 0.59
YBX3-203ENST00000366286 SUPT5HO00267 1087 aaKnown RBP18.75■□□□□ 0.59
YBX3-203ENST00000366286 ABCC8Q09428 1581 aa18.71■□□□□ 0.59
YBX3-203ENST00000366286 IFT140Q96RY7 1462 aa18.66■□□□□ 0.58
YBX3-203ENST00000366286 TARBP1Q13395 1621 aaKnown RBP18.61■□□□□ 0.57
YBX3-203ENST00000366286 EIF4G3O43432 1585 aaKnown RBP18.61■□□□□ 0.57
YBX3-203ENST00000366286 ZNF608Q9ULD9 1512 aaPredicted RBP18.61■□□□□ 0.57
YBX3-203ENST00000366286 POLA1P09884 1462 aaPredicted RBP18.58■□□□□ 0.57
YBX3-203ENST00000366286 CUX1P39880 1505 aa18.58■□□□□ 0.56
YBX3-203ENST00000366286 FGD5Q6ZNL6 1462 aa18.52■□□□□ 0.56
YBX3-203ENST00000366286 WDR97A6NE52 1622 aa18.49■□□□□ 0.55
YBX3-203ENST00000366286 RAD54L2Q9Y4B4 1467 aa18.49■□□□□ 0.55
YBX3-203ENST00000366286 CHD1O14646 1710 aa18.46■□□□□ 0.55
YBX3-203ENST00000366286 SOGA1O94964 1423 aa18.45■□□□□ 0.54
YBX3-203ENST00000366286 AQRO60306 1485 aaKnown RBP eCLIP18.45■□□□□ 0.541e-6■■■■□ 26.1
YBX3-203ENST00000366286 BIVM-ERCC5R4GMW8 1640 aa18.43■□□□□ 0.54
YBX3-203ENST00000366286 SYNJ1O43426 1573 aa18.39■□□□□ 0.53
YBX3-203ENST00000366286 PBRM1Q86U86 1689 aa18.39■□□□□ 0.53
YBX3-203ENST00000366286 TOP2BQ02880 1626 aa18.38■□□□□ 0.53
YBX3-203ENST00000366286 OSCARQ8IYS5 282 aa18.37■□□□□ 0.53
YBX3-203ENST00000366286 TDRD9Q8NDG6 1382 aaKnown RBP18.36■□□□□ 0.53
YBX3-203ENST00000366286 ABCA5Q8WWZ7 1642 aa18.34■□□□□ 0.53
YBX3-203ENST00000366286 WRNQ14191 1432 aaPredicted RBP eCLIP18.33■□□□□ 0.53
YBX3-203ENST00000366286 ABCA10Q8WWZ4 1543 aa18.33■□□□□ 0.52
YBX3-203ENST00000366286 SNAPC4Q5SXM2 1469 aa18.33■□□□□ 0.52
YBX3-203ENST00000366286 GRIN2BQ13224 1484 aa18.29■□□□□ 0.52
YBX3-203ENST00000366286 MAGI1Q96QZ7 1491 aaPredicted RBP18.28■□□□□ 0.52
YBX3-203ENST00000366286 GAPVD1Q14C86 1478 aa18.27■□□□□ 0.52
YBX3-203ENST00000366286 RIMBP3CA6NJZ7 1639 aa18.27■□□□□ 0.51
YBX3-203ENST00000366286 RIMBP3BA6NNM3 1639 aa18.27■□□□□ 0.51
YBX3-203ENST00000366286 RIMBP3Q9UFD9 1639 aa18.27■□□□□ 0.51
YBX3-203ENST00000366286 ARHGEF11O15085 1522 aa18.2■□□□□ 0.5
YBX3-203ENST00000366286 FBLN2P98095 1184 aa18.2■□□□□ 0.5
YBX3-203ENST00000366286 SYNJ2O15056 1496 aa18.2■□□□□ 0.5
YBX3-203ENST00000366286 ADAMTS12P58397 1594 aa18.18■□□□□ 0.5
YBX3-203ENST00000366286 CLASP1Q7Z460 1538 aa18.18■□□□□ 0.5
YBX3-203ENST00000366286 TRIM41Q8WV44 630 aa18.15■□□□□ 0.5
YBX3-203ENST00000366286 CHMP7Q8WUX9 453 aaPredicted RBP18.12■□□□□ 0.49
YBX3-203ENST00000366286 ERICH3Q5RHP9 1530 aa18.12■□□□□ 0.49
YBX3-203ENST00000366286 GRIN2AQ12879 1464 aa18.07■□□□□ 0.48
YBX3-203ENST00000366286 ARAP1Q96P48 1450 aa18.04■□□□□ 0.48
YBX3-203ENST00000366286 FHAD1B1AJZ9 1412 aa18.04■□□□□ 0.48
YBX3-203ENST00000366286 CEP170Q5SW79 1584 aa18.04■□□□□ 0.48
YBX3-203ENST00000366286 NUP160Q12769 1436 aa17.99■□□□□ 0.47
YBX3-203ENST00000366286 CUL7Q14999 1698 aa17.98■□□□□ 0.47
YBX3-203ENST00000366286 SHROOM2Q13796 1616 aa17.95■□□□□ 0.46
YBX3-203ENST00000366286 KIF27Q86VH2 1401 aa17.95■□□□□ 0.46
YBX3-203ENST00000366286 RUSC2Q8N2Y8 1516 aa17.93■□□□□ 0.46
YBX3-203ENST00000366286 CYB5RLQ6IPT4 315 aa17.92■□□□□ 0.46
YBX3-203ENST00000366286 ERCC6L2Q5T890 1561 aa17.91■□□□□ 0.46
YBX3-203ENST00000366286 IGF1RP08069 1367 aa17.87■□□□□ 0.45
YBX3-203ENST00000366286 CARMIL1Q5VZK9 1371 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 133.7 ms