RNA–Protein interactions for RNA: ENST00000361804.4

SMC3-201, Transcript of structural maintenance of chromosomes 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC3, Length 4,114 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC3-201ENST00000361804 NISCHQ9Y2I1 1504 aa22.77■■□□□ 1.24
SMC3-201ENST00000361804 CCDC180Q9P1Z9 1646 aa19.61■□□□□ 0.73
SMC3-201ENST00000361804 ZCCHC6Q5VYS8 1495 aaKnown RBP19.29■□□□□ 0.68
SMC3-201ENST00000361804 SHROOM4Q9ULL8 1493 aa18.83■□□□□ 0.61
SMC3-201ENST00000361804 DCAF1Q9Y4B6 1507 aa18.75■□□□□ 0.59
SMC3-201ENST00000361804 SUPT5HO00267 1087 aaKnown RBP18.47■□□□□ 0.55
SMC3-201ENST00000361804 MYO15BQ96JP2 1530 aa18.3■□□□□ 0.52
SMC3-201ENST00000361804 ABCC9O60706 1549 aa18.19■□□□□ 0.5
SMC3-201ENST00000361804 SCRIBQ14160 1630 aa18.17■□□□□ 0.5
SMC3-201ENST00000361804 DCAF8L2P0C7V8 631 aa18.13■□□□□ 0.49
SMC3-201ENST00000361804 UNC13AQ9UPW8 1703 aa18.02■□□□□ 0.48
SMC3-201ENST00000361804 NACADO15069 1562 aa17.98■□□□□ 0.47
SMC3-201ENST00000361804 RSF1Q96T23 1441 aaPredicted RBP17.87■□□□□ 0.45
SMC3-201ENST00000361804 CHIC1Q5VXU3 224 aa17.84■□□□□ 0.45
SMC3-201ENST00000361804 CECR2Q9BXF3 1484 aa17.83■□□□□ 0.44
SMC3-201ENST00000361804 RB1CC1Q8TDY2 1594 aa17.8■□□□□ 0.44
SMC3-201ENST00000361804 MROH2BQ7Z745 1585 aa17.75■□□□□ 0.43
SMC3-201ENST00000361804 WIZO95785 1651 aa17.71■□□□□ 0.43
SMC3-201ENST00000361804 PCGF6Q9BYE7 350 aa17.67■□□□□ 0.42
SMC3-201ENST00000361804 EIF4G1Q04637 1599 aaKnown RBP17.65■□□□□ 0.42
SMC3-201ENST00000361804 BICRAQ9NZM4 1560 aa17.64■□□□□ 0.41
SMC3-201ENST00000361804 HRCP23327 699 aa17.6■□□□□ 0.41
SMC3-201ENST00000361804 LOC105371045A0A1W2PR82 267 aa17.55■□□□□ 0.4
SMC3-201ENST00000361804 PPARGC1BQ86YN6 1023 aaKnown RBP17.55■□□□□ 0.4
SMC3-201ENST00000361804 BAZ1AQ9NRL2 1556 aaPredicted RBP17.52■□□□□ 0.39
SMC3-201ENST00000361804 SMARCA4P51532 1647 aa17.46■□□□□ 0.39
SMC3-201ENST00000361804 SMARCA2P51531 1590 aa17.3■□□□□ 0.36
SMC3-201ENST00000361804 TOP2AP11388 1531 aaKnown RBP17.29■□□□□ 0.36
SMC3-201ENST00000361804 PEG3Q9GZU2 1588 aa17.27■□□□□ 0.35
SMC3-201ENST00000361804 EHMT2Q96KQ7 1210 aa17.22■□□□□ 0.35
SMC3-201ENST00000361804 CCDC88BA6NC98 1476 aa17.18■□□□□ 0.34
SMC3-201ENST00000361804 FAM9AQ8IZU1 332 aaPredicted RBP17.15■□□□□ 0.34
SMC3-201ENST00000361804 ABCC8Q09428 1581 aa17.11■□□□□ 0.33
SMC3-201ENST00000361804 PABPN1Q86U42 306 aaKnown RBP eCLIP17.07■□□□□ 0.32
SMC3-201ENST00000361804 TRIM26Q12899 539 aaPredicted RBP17.02■□□□□ 0.31
SMC3-201ENST00000361804 TRIM41Q8WV44 630 aa16.99■□□□□ 0.31
SMC3-201ENST00000361804 ATAD2BQ9ULI0 1458 aa16.96■□□□□ 0.3
SMC3-201ENST00000361804 SYNJ1O43426 1573 aa16.88■□□□□ 0.29
SMC3-201ENST00000361804 RUSC2Q8N2Y8 1516 aa16.87■□□□□ 0.29
SMC3-201ENST00000361804 SOGA1O94964 1423 aa16.8■□□□□ 0.28
SMC3-201ENST00000361804 BAZ1BQ9UIG0 1483 aaKnown RBP16.71■□□□□ 0.27
SMC3-201ENST00000361804 HMGXB3Q12766 1538 aa16.71■□□□□ 0.27
SMC3-201ENST00000361804 BIVM-ERCC5R4GMW8 1640 aa16.67■□□□□ 0.26
SMC3-201ENST00000361804 TTBK1Q5TCY1 1321 aaPredicted RBP16.67■□□□□ 0.26
SMC3-201ENST00000361804 NCAPD3P42695 1498 aa16.66■□□□□ 0.26
SMC3-201ENST00000361804 PRDM2Q13029 1718 aa16.63■□□□□ 0.25
SMC3-201ENST00000361804 TOP2BQ02880 1626 aa16.62■□□□□ 0.25
SMC3-201ENST00000361804 WRNQ14191 1432 aaPredicted RBP eCLIP16.59■□□□□ 0.25
SMC3-201ENST00000361804 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.58■□□□□ 0.24
SMC3-201ENST00000361804 ZEB1P37275 1124 aaPredicted RBP16.55■□□□□ 0.24
SMC3-201ENST00000361804 CUX1P39880 1505 aa16.54■□□□□ 0.24
SMC3-201ENST00000361804 KIF21BO75037 1637 aa16.53■□□□□ 0.24
SMC3-201ENST00000361804 SCAF1Q9H7N4 1312 aaKnown RBP16.49■□□□□ 0.23
SMC3-201ENST00000361804 CFTRP13569 1480 aa16.48■□□□□ 0.23
SMC3-201ENST00000361804 CC2D2AQ9P2K1 1620 aa16.48■□□□□ 0.23
SMC3-201ENST00000361804 CEP162Q5TB80 1403 aa16.45■□□□□ 0.22
SMC3-201ENST00000361804 CCER1Q8TC90 406 aaPredicted RBP16.42■□□□□ 0.22
SMC3-201ENST00000361804 RAPGEF2Q9Y4G8 1499 aa16.4■□□□□ 0.22
SMC3-201ENST00000361804 TNIKQ9UKE5 1360 aa16.4■□□□□ 0.22
SMC3-201ENST00000361804 EEA1Q15075 1411 aa16.38■□□□□ 0.21
SMC3-201ENST00000361804 GOLGA3Q08378 1498 aa16.33■□□□□ 0.2
SMC3-201ENST00000361804 CSRNP3Q8WYN3 585 aa16.33■□□□□ 0.2
SMC3-201ENST00000361804 PRXQ9BXM0 1461 aa16.32■□□□□ 0.2
SMC3-201ENST00000361804 CEP164Q9UPV0 1460 aa16.27■□□□□ 0.19
SMC3-201ENST00000361804 DNAJC5BQ9UF47 199 aa16.25■□□□□ 0.19
SMC3-201ENST00000361804 ERICH3Q5RHP9 1530 aa16.24■□□□□ 0.19
SMC3-201ENST00000361804 NEUROD1Q13562 356 aa16.23■□□□□ 0.19
SMC3-201ENST00000361804 UBTFP17480 764 aaKnown RBP16.22■□□□□ 0.19
SMC3-201ENST00000361804 WDR97A6NE52 1622 aa16.22■□□□□ 0.19
SMC3-201ENST00000361804 NESP48681 1621 aa16.21■□□□□ 0.19
SMC3-201ENST00000361804 ARAP1Q96P48 1450 aa16.2■□□□□ 0.18
SMC3-201ENST00000361804 DIEXFQ68CQ4 756 aaKnown RBP16.17■□□□□ 0.18
SMC3-201ENST00000361804 CADPSQ9ULU8 1353 aa16.16■□□□□ 0.18
SMC3-201ENST00000361804 CLIP1P30622 1438 aa16.16■□□□□ 0.18
SMC3-201ENST00000361804 RANGAP1P46060 587 aaPredicted RBP16.15■□□□□ 0.18
SMC3-201ENST00000361804 ACIN1Q9UKV3 1341 aaKnown RBP16.12■□□□□ 0.17
SMC3-201ENST00000361804 FGD5Q6ZNL6 1462 aa16.12■□□□□ 0.17
SMC3-201ENST00000361804 KIF21AQ7Z4S6 1674 aa16.1■□□□□ 0.17
SMC3-201ENST00000361804 HNRNPUL2Q1KMD3 747 aaKnown RBP16.08■□□□□ 0.17
SMC3-201ENST00000361804 VPS8Q8N3P4 1428 aa16.08■□□□□ 0.16
SMC3-201ENST00000361804 GTF3C3Q9Y5Q9 886 aa16.07■□□□□ 0.16
SMC3-201ENST00000361804 FANCD2Q9BXW9 1451 aa16.06■□□□□ 0.16
SMC3-201ENST00000361804 ARHGAP35Q9NRY4 1499 aa16.05■□□□□ 0.16
SMC3-201ENST00000361804 DNMBPQ6XZF7 1577 aa16.05■□□□□ 0.16
SMC3-201ENST00000361804 YTHDC1Q96MU7 727 aaKnown RBP16.05■□□□□ 0.16
SMC3-201ENST00000361804 URB2Q14146 1524 aaKnown RBP16.05■□□□□ 0.16
SMC3-201ENST00000361804 IGF1RP08069 1367 aa16.05■□□□□ 0.16
SMC3-201ENST00000361804 LRRIQ1Q96JM4 1722 aa16.04■□□□□ 0.16
SMC3-201ENST00000361804 TOPBP1Q92547 1522 aa16.03■□□□□ 0.16
SMC3-201ENST00000361804 POLA1P09884 1462 aaPredicted RBP16.02■□□□□ 0.15
SMC3-201ENST00000361804 RAD54L2Q9Y4B4 1467 aa16.01■□□□□ 0.15
SMC3-201ENST00000361804 ABCA5Q8WWZ7 1642 aa16■□□□□ 0.15
SMC3-201ENST00000361804 LAMC3Q9Y6N6 1575 aa15.98■□□□□ 0.15
SMC3-201ENST00000361804 KIF27Q86VH2 1401 aa15.98■□□□□ 0.15
SMC3-201ENST00000361804 ABCA10Q8WWZ4 1543 aa15.97■□□□□ 0.15
SMC3-201ENST00000361804 CUX2O14529 1486 aa15.97■□□□□ 0.15
SMC3-201ENST00000361804 TARBP1Q13395 1621 aaKnown RBP15.96■□□□□ 0.15
SMC3-201ENST00000361804 ZNF316A6NFI3 1004 aaPredicted RBP15.92■□□□□ 0.14
SMC3-201ENST00000361804 PELP1Q8IZL8 1130 aaKnown RBP15.92■□□□□ 0.14
SMC3-201ENST00000361804 CTTNBP2Q8WZ74 1663 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms