RNA–Protein interactions for RNA: ENST00000361675.6

CALD1-201, Transcript of caldesmon 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CALD1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALD1-201ENST00000361675 NISCHQ9Y2I1 1504 aa17.53■□□□□ 0.4
CALD1-201ENST00000361675 SLC24A1O60721 1099 aa16.05■□□□□ 0.16
CALD1-201ENST00000361675 MYT1Q01538 1121 aa15.81■□□□□ 0.12
CALD1-201ENST00000361675 PELP1Q8IZL8 1130 aaKnown RBP15.81■□□□□ 0.12
CALD1-201ENST00000361675 PRKCSHP14314 528 aaPredicted RBP15.35■□□□□ 0.05
CALD1-201ENST00000361675 ERICH6Q7L0X2 663 aa15.2■□□□□ 0.02
CALD1-201ENST00000361675 TTBK1Q5TCY1 1321 aaPredicted RBP15.18■□□□□ 0.02
CALD1-201ENST00000361675 PPARGC1BQ86YN6 1023 aaKnown RBP14.98□□□□□ -0.01
CALD1-201ENST00000361675 HRCP23327 699 aa14.96□□□□□ -0.01
CALD1-201ENST00000361675 SHROOM4Q9ULL8 1493 aa14.96□□□□□ -0.02
CALD1-201ENST00000361675 CCDC180Q9P1Z9 1646 aa14.87□□□□□ -0.03
CALD1-201ENST00000361675 DAXXQ9UER7 740 aaPredicted RBP14.78□□□□□ -0.04
CALD1-201ENST00000361675 ZCCHC6Q5VYS8 1495 aaKnown RBP14.78□□□□□ -0.04
CALD1-201ENST00000361675 PCGF6Q9BYE7 350 aa14.75□□□□□ -0.05
CALD1-201ENST00000361675 DCAF8L2P0C7V8 631 aa14.69□□□□□ -0.06
CALD1-201ENST00000361675 APLP2Q06481 763 aa14.67□□□□□ -0.06
CALD1-201ENST00000361675 EHMT2Q96KQ7 1210 aa14.67□□□□□ -0.06
CALD1-201ENST00000361675 SCAF1Q9H7N4 1312 aaKnown RBP14.65□□□□□ -0.06
CALD1-201ENST00000361675 SUPT5HO00267 1087 aaKnown RBP14.54□□□□□ -0.08
CALD1-201ENST00000361675 EIF5BO60841 1220 aaKnown RBP14.53□□□□□ -0.08
CALD1-201ENST00000361675 BCL11AQ9H165 835 aa14.5□□□□□ -0.09
CALD1-201ENST00000361675 PLPPR3Q6T4P5 718 aa14.34□□□□□ -0.11
CALD1-201ENST00000361675 DCAF1Q9Y4B6 1507 aa14.28□□□□□ -0.12
CALD1-201ENST00000361675 GTF3C3Q9Y5Q9 886 aa14.24□□□□□ -0.13
CALD1-201ENST00000361675 PLEKHG5O94827 1062 aa14.23□□□□□ -0.13
CALD1-201ENST00000361675 CENPBP07199 599 aaPredicted RBP14.18□□□□□ -0.14
CALD1-201ENST00000361675 FAM9AQ8IZU1 332 aaPredicted RBP14.16□□□□□ -0.14
CALD1-201ENST00000361675 RTN4Q9NQC3 1192 aaKnown RBP14.16□□□□□ -0.14
CALD1-201ENST00000361675 ABCC9O60706 1549 aa14.12□□□□□ -0.15
CALD1-201ENST00000361675 RANGAP1P46060 587 aaPredicted RBP14.1□□□□□ -0.15
CALD1-201ENST00000361675 NEUROD1Q13562 356 aa14.08□□□□□ -0.15
CALD1-201ENST00000361675 ACIN1Q9UKV3 1341 aaKnown RBP14.08□□□□□ -0.15
CALD1-201ENST00000361675 SCRIBQ14160 1630 aa14.06□□□□□ -0.16
CALD1-201ENST00000361675 CHIC1Q5VXU3 224 aa14.02□□□□□ -0.17
CALD1-201ENST00000361675 MYO15BQ96JP2 1530 aa13.99□□□□□ -0.17
CALD1-201ENST00000361675 YTHDC1Q96MU7 727 aaKnown RBP13.96□□□□□ -0.18
CALD1-201ENST00000361675 NCBP3Q53F19 620 aaKnown RBP13.94□□□□□ -0.18
CALD1-201ENST00000361675 PODXL2Q9NZ53 605 aa13.92□□□□□ -0.18
CALD1-201ENST00000361675 KLHL34Q8N239 644 aa13.88□□□□□ -0.19
CALD1-201ENST00000361675 ZEB1P37275 1124 aaPredicted RBP13.85□□□□□ -0.19
CALD1-201ENST00000361675 RSF1Q96T23 1441 aaPredicted RBP13.84□□□□□ -0.19
CALD1-201ENST00000361675 NACADO15069 1562 aa13.82□□□□□ -0.2
CALD1-201ENST00000361675 TIMELESSQ9UNS1 1208 aa13.8□□□□□ -0.2
CALD1-201ENST00000361675 CECR2Q9BXF3 1484 aa13.79□□□□□ -0.2
CALD1-201ENST00000361675 TULP1O00294 542 aaPredicted RBP13.77□□□□□ -0.21
CALD1-201ENST00000361675 ANP32EQ9BTT0 268 aa13.72□□□□□ -0.21
CALD1-201ENST00000361675 TRIM26Q12899 539 aaPredicted RBP13.7□□□□□ -0.22
CALD1-201ENST00000361675 AEBP2Q6ZN18 517 aaPredicted RBP13.7□□□□□ -0.22
CALD1-201ENST00000361675 CSRNP3Q8WYN3 585 aa13.7□□□□□ -0.22
CALD1-201ENST00000361675 LOC105371045A0A1W2PR82 267 aa13.69□□□□□ -0.22
CALD1-201ENST00000361675 MROH2BQ7Z745 1585 aa13.69□□□□□ -0.22
CALD1-201ENST00000361675 RB1CC1Q8TDY2 1594 aa13.68□□□□□ -0.22
CALD1-201ENST00000361675 DIEXFQ68CQ4 756 aaKnown RBP13.62□□□□□ -0.23
CALD1-201ENST00000361675 WIZO95785 1651 aa13.6□□□□□ -0.23
CALD1-201ENST00000361675 UNC13AQ9UPW8 1703 aa13.54□□□□□ -0.24
CALD1-201ENST00000361675 PABPN1Q86U42 306 aaKnown RBP eCLIP13.53□□□□□ -0.24
CALD1-201ENST00000361675 ARXQ96QS3 562 aa13.53□□□□□ -0.24
CALD1-201ENST00000361675 CCER1Q8TC90 406 aaPredicted RBP13.47□□□□□ -0.25
CALD1-201ENST00000361675 TRIM41Q8WV44 630 aa13.47□□□□□ -0.25
CALD1-201ENST00000361675 ANO8Q9HCE9 1232 aaPredicted RBP13.45□□□□□ -0.26
CALD1-201ENST00000361675 HAP1P54257 671 aaPredicted RBP13.43□□□□□ -0.26
CALD1-201ENST00000361675 PKNOX2Q96KN3 472 aa13.43□□□□□ -0.26
CALD1-201ENST00000361675 BAZ1AQ9NRL2 1556 aaPredicted RBP13.42□□□□□ -0.26
CALD1-201ENST00000361675 BICRAQ9NZM4 1560 aa13.41□□□□□ -0.26
CALD1-201ENST00000361675 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.39□□□□□ -0.27
CALD1-201ENST00000361675 PDIA4P13667 645 aaKnown RBP13.39□□□□□ -0.27
CALD1-201ENST00000361675 CCDC136Q96JN2 1154 aa13.38□□□□□ -0.27
CALD1-201ENST00000361675 SMARCA4P51532 1647 aa13.38□□□□□ -0.27
CALD1-201ENST00000361675 HOMEZQ8IX15 550 aa13.37□□□□□ -0.27
CALD1-201ENST00000361675 PDE4CQ08493 712 aa13.37□□□□□ -0.27
CALD1-201ENST00000361675 BCANQ96GW7 911 aa13.35□□□□□ -0.27
CALD1-201ENST00000361675 C14orf37Q86TY3 774 aa13.34□□□□□ -0.27
CALD1-201ENST00000361675 NEFLP07196 543 aa13.31□□□□□ -0.28
CALD1-201ENST00000361675 CCDC88BA6NC98 1476 aa13.31□□□□□ -0.28
CALD1-201ENST00000361675 EIF4G1Q04637 1599 aaKnown RBP13.3□□□□□ -0.28
CALD1-201ENST00000361675 UBE2Q2Q8WVN8 375 aa13.3□□□□□ -0.28
CALD1-201ENST00000361675 TOP2AP11388 1531 aaKnown RBP13.29□□□□□ -0.28
CALD1-201ENST00000361675 A0A0U1RQG5 324 aaPredicted RBP13.27□□□□□ -0.28
CALD1-201ENST00000361675 TSHZ2Q9NRE2 1034 aa13.27□□□□□ -0.29
CALD1-201ENST00000361675 AMER1Q5JTC6 1135 aaPredicted RBP13.26□□□□□ -0.29
CALD1-201ENST00000361675 SMARCA2P51531 1590 aa13.26□□□□□ -0.29
CALD1-201ENST00000361675 ABCC8Q09428 1581 aa13.26□□□□□ -0.29
CALD1-201ENST00000361675 TPRNQ4KMQ1 711 aa13.26□□□□□ -0.29
CALD1-201ENST00000361675 NPM2Q86SE8 214 aaKnown RBP13.24□□□□□ -0.29
CALD1-201ENST00000361675 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.22□□□□□ -0.29
CALD1-201ENST00000361675 DHX37Q8IY37 1157 aaKnown RBP13.2□□□□□ -0.3
CALD1-201ENST00000361675 SALL2Q9Y467 1007 aaPredicted RBP13.17□□□□□ -0.3
CALD1-201ENST00000361675 KCNA4P22459 653 aa13.15□□□□□ -0.3
CALD1-201ENST00000361675 SUPT16HQ9Y5B9 1047 aaKnown RBP13.15□□□□□ -0.3
CALD1-201ENST00000361675 TAOK2Q9UL54 1235 aa13.15□□□□□ -0.3
CALD1-201ENST00000361675 MIER1Q8N108 512 aa13.13□□□□□ -0.31
CALD1-201ENST00000361675 BCL11BQ9C0K0 894 aaPredicted RBP13.13□□□□□ -0.31
CALD1-201ENST00000361675 ATAD2BQ9ULI0 1458 aa13.1□□□□□ -0.31
CALD1-201ENST00000361675 SOGA1O94964 1423 aa13.1□□□□□ -0.31
CALD1-201ENST00000361675 RUSC2Q8N2Y8 1516 aa13.09□□□□□ -0.31
CALD1-201ENST00000361675 PEG3Q9GZU2 1588 aa13.09□□□□□ -0.31
CALD1-201ENST00000361675 DEKP35659 375 aaKnown RBP13.06□□□□□ -0.32
CALD1-201ENST00000361675 POLR3GLQ9BT43 218 aa13.05□□□□□ -0.32
CALD1-201ENST00000361675 CHMP4AQ9BY43 222 aa13.04□□□□□ -0.32
CALD1-201ENST00000361675 ZNF316A6NFI3 1004 aaPredicted RBP13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms