RNA–Protein interactions for RNA: ENST00000360688.3

GDPD3-201, Transcript of glycerophosphodiester phosphodiesterase domain containing 3, humanhuman

TSL 1 (best)

Gene GDPD3, Length 1,306 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GDPD3-201ENST00000360688 NISCHQ9Y2I1 1504 aa37.94■■■■□ 3.66
GDPD3-201ENST00000360688 ABCC9O60706 1549 aa34.16■■■■□ 3.06
GDPD3-201ENST00000360688 CCDC180Q9P1Z9 1646 aa34.1■■■■□ 3.05
GDPD3-201ENST00000360688 RB1CC1Q8TDY2 1594 aa32.49■■■□□ 2.79
GDPD3-201ENST00000360688 NACADO15069 1562 aa32.24■■■□□ 2.75
GDPD3-201ENST00000360688 DNAJC5BQ9UF47 199 aa32.13■■■□□ 2.73
GDPD3-201ENST00000360688 DCAF8L2P0C7V8 631 aa32.03■■■□□ 2.72
GDPD3-201ENST00000360688 UNC13AQ9UPW8 1703 aa31.82■■■□□ 2.68
GDPD3-201ENST00000360688 PABPN1Q86U42 306 aaKnown RBP eCLIP31.78■■■□□ 2.68
GDPD3-201ENST00000360688 MYO15BQ96JP2 1530 aa31.77■■■□□ 2.68
GDPD3-201ENST00000360688 BICRAQ9NZM4 1560 aa31.57■■■□□ 2.64
GDPD3-201ENST00000360688 ZCCHC6Q5VYS8 1495 aaKnown RBP31.42■■■□□ 2.62
GDPD3-201ENST00000360688 DCAF1Q9Y4B6 1507 aa31.34■■■□□ 2.61
GDPD3-201ENST00000360688 SHROOM4Q9ULL8 1493 aa31.1■■■□□ 2.57
GDPD3-201ENST00000360688 SCRIBQ14160 1630 aa31.05■■■□□ 2.56
GDPD3-201ENST00000360688 CC2D2AQ9P2K1 1620 aa30.87■■■□□ 2.53
GDPD3-201ENST00000360688 EIF4G1Q04637 1599 aaKnown RBP30.79■■■□□ 2.52
GDPD3-201ENST00000360688 CECR2Q9BXF3 1484 aa30.78■■■□□ 2.52
GDPD3-201ENST00000360688 NCAPD3P42695 1498 aa29.76■■■□□ 2.35
GDPD3-201ENST00000360688 ATAD2BQ9ULI0 1458 aa29.66■■■□□ 2.34
GDPD3-201ENST00000360688 SMARCA4P51532 1647 aa29.63■■■□□ 2.33
GDPD3-201ENST00000360688 SMARCA2P51531 1590 aa29.57■■■□□ 2.32
GDPD3-201ENST00000360688 DNAJC5Q9H3Z4 198 aa29.56■■■□□ 2.32
GDPD3-201ENST00000360688 HMGXB3Q12766 1538 aa29.54■■■□□ 2.32
GDPD3-201ENST00000360688 ERCC6Q03468 1493 aa29.49■■■□□ 2.31
GDPD3-201ENST00000360688 CUX2O14529 1486 aa29.47■■■□□ 2.31
GDPD3-201ENST00000360688 BAZ1AQ9NRL2 1556 aaPredicted RBP29.45■■■□□ 2.31
GDPD3-201ENST00000360688 BAZ1BQ9UIG0 1483 aaKnown RBP29.36■■■□□ 2.29
GDPD3-201ENST00000360688 NESP48681 1621 aa29.34■■■□□ 2.29
GDPD3-201ENST00000360688 PEG3Q9GZU2 1588 aa29.34■■■□□ 2.29
GDPD3-201ENST00000360688 MROH2BQ7Z745 1585 aa29.24■■■□□ 2.27
GDPD3-201ENST00000360688 LAMC3Q9Y6N6 1575 aa29.12■■■□□ 2.25
GDPD3-201ENST00000360688 THOC2Q8NI27 1593 aaKnown RBP29.06■■■□□ 2.24
GDPD3-201ENST00000360688 KIF21AQ7Z4S6 1674 aa28.98■■■□□ 2.23
GDPD3-201ENST00000360688 PDS5BQ9NTI5 1447 aa28.93■■■□□ 2.22
GDPD3-201ENST00000360688 WIZO95785 1651 aa28.9■■■□□ 2.22
GDPD3-201ENST00000360688 CADPSQ9ULU8 1353 aa28.85■■■□□ 2.21
GDPD3-201ENST00000360688 MRC2Q9UBG0 1479 aa28.7■■■□□ 2.18
GDPD3-201ENST00000360688 WDR62O43379 1518 aa28.63■■■□□ 2.17
GDPD3-201ENST00000360688 RSF1Q96T23 1441 aaPredicted RBP28.6■■■□□ 2.17
GDPD3-201ENST00000360688 CEP164Q9UPV0 1460 aa28.56■■■□□ 2.16
GDPD3-201ENST00000360688 FANCD2Q9BXW9 1451 aa28.53■■■□□ 2.16
GDPD3-201ENST00000360688 CFTRP13569 1480 aa28.51■■■□□ 2.15
GDPD3-201ENST00000360688 TOP2AP11388 1531 aaKnown RBP28.5■■■□□ 2.15
GDPD3-201ENST00000360688 URB2Q14146 1524 aaKnown RBP28.31■■■□□ 2.12
GDPD3-201ENST00000360688 PRDM2Q13029 1718 aa28.26■■■□□ 2.12
GDPD3-201ENST00000360688 TRIM41Q8WV44 630 aa28.21■■■□□ 2.11
GDPD3-201ENST00000360688 CCDC88BA6NC98 1476 aa28.18■■■□□ 2.1
GDPD3-201ENST00000360688 OSCARQ8IYS5 282 aa28.11■■■□□ 2.09
GDPD3-201ENST00000360688 IFT140Q96RY7 1462 aa27.99■■■□□ 2.07
GDPD3-201ENST00000360688 TOPBP1Q92547 1522 aa27.98■■■□□ 2.07
GDPD3-201ENST00000360688 ZNF608Q9ULD9 1512 aaPredicted RBP27.97■■■□□ 2.07
GDPD3-201ENST00000360688 ABCC8Q09428 1581 aa27.91■■■□□ 2.06
GDPD3-201ENST00000360688 DNMBPQ6XZF7 1577 aa27.87■■■□□ 2.05
GDPD3-201ENST00000360688 EIF4G3O43432 1585 aaKnown RBP27.82■■■□□ 2.04
GDPD3-201ENST00000360688 RIMBP3CA6NJZ7 1639 aa27.78■■■□□ 2.04
GDPD3-201ENST00000360688 RIMBP3BA6NNM3 1639 aa27.78■■■□□ 2.04
GDPD3-201ENST00000360688 RIMBP3Q9UFD9 1639 aa27.78■■■□□ 2.04
GDPD3-201ENST00000360688 TARBP1Q13395 1621 aaKnown RBP27.76■■■□□ 2.03
GDPD3-201ENST00000360688 AQRO60306 1485 aaKnown RBP eCLIP27.7■■■□□ 2.02
GDPD3-201ENST00000360688 POLA1P09884 1462 aaPredicted RBP27.69■■■□□ 2.02
GDPD3-201ENST00000360688 ARHGEF11O15085 1522 aa27.68■■■□□ 2.02
GDPD3-201ENST00000360688 CHD1O14646 1710 aa27.65■■■□□ 2.02
GDPD3-201ENST00000360688 RAD54L2Q9Y4B4 1467 aa27.59■■■□□ 2.01
GDPD3-201ENST00000360688 SOGA1O94964 1423 aa27.55■■■□□ 2
GDPD3-201ENST00000360688 TDRD9Q8NDG6 1382 aaKnown RBP27.52■■■□□ 2
GDPD3-201ENST00000360688 FBLN2P98095 1184 aa27.51■■□□□ 1.99
GDPD3-201ENST00000360688 FGD5Q6ZNL6 1462 aa27.5■■□□□ 1.99
GDPD3-201ENST00000360688 CUX1P39880 1505 aa27.47■■□□□ 1.99
GDPD3-201ENST00000360688 CYB5RLQ6IPT4 315 aa27.45■■□□□ 1.99
GDPD3-201ENST00000360688 WDR97A6NE52 1622 aa27.45■■□□□ 1.99
GDPD3-201ENST00000360688 SNAPC4Q5SXM2 1469 aa27.42■■□□□ 1.98
GDPD3-201ENST00000360688 ARAP1Q96P48 1450 aa27.4■■□□□ 1.98
GDPD3-201ENST00000360688 MAGI1Q96QZ7 1491 aaPredicted RBP27.33■■□□□ 1.97
GDPD3-201ENST00000360688 GRIN2BQ13224 1484 aa27.32■■□□□ 1.96
GDPD3-201ENST00000360688 CLASP1Q7Z460 1538 aa27.31■■□□□ 1.96
GDPD3-201ENST00000360688 CHMP7Q8WUX9 453 aaPredicted RBP27.3■■□□□ 1.96
GDPD3-201ENST00000360688 SYNJ1O43426 1573 aa27.27■■□□□ 1.96
GDPD3-201ENST00000360688 SYNJ2O15056 1496 aa27.25■■□□□ 1.95
GDPD3-201ENST00000360688 PBRM1Q86U86 1689 aa27.25■■□□□ 1.95
GDPD3-201ENST00000360688 SUPT5HO00267 1087 aaKnown RBP27.24■■□□□ 1.95
GDPD3-201ENST00000360688 GAPVD1Q14C86 1478 aa27.22■■□□□ 1.95
GDPD3-201ENST00000360688 ABCA10Q8WWZ4 1543 aa27.18■■□□□ 1.94
GDPD3-201ENST00000360688 TRHP20396 242 aaPredicted RBP27.17■■□□□ 1.94
GDPD3-201ENST00000360688 ABCA5Q8WWZ7 1642 aa27.17■■□□□ 1.94
GDPD3-201ENST00000360688 WRNQ14191 1432 aaPredicted RBP eCLIP27.05■■□□□ 1.92
GDPD3-201ENST00000360688 BIVM-ERCC5R4GMW8 1640 aa27.03■■□□□ 1.92
GDPD3-201ENST00000360688 TOP2BQ02880 1626 aa27.01■■□□□ 1.92
GDPD3-201ENST00000360688 GRIN2AQ12879 1464 aa26.98■■□□□ 1.91
GDPD3-201ENST00000360688 ADAMTS12P58397 1594 aa26.97■■□□□ 1.91
GDPD3-201ENST00000360688 CEP170Q5SW79 1584 aa26.9■■□□□ 1.9
GDPD3-201ENST00000360688 NUP160Q12769 1436 aa26.9■■□□□ 1.9
GDPD3-201ENST00000360688 ERCC6L2Q5T890 1561 aa26.88■■□□□ 1.89
GDPD3-201ENST00000360688 FHAD1B1AJZ9 1412 aa26.87■■□□□ 1.89
GDPD3-201ENST00000360688 ERICH3Q5RHP9 1530 aa26.85■■□□□ 1.89
GDPD3-201ENST00000360688 SHROOM2Q13796 1616 aa26.8■■□□□ 1.88
GDPD3-201ENST00000360688 PRG4Q92954 1404 aaPredicted RBP26.64■■□□□ 1.85
GDPD3-201ENST00000360688 JPH4Q96JJ6 628 aa26.62■■□□□ 1.85
GDPD3-201ENST00000360688 RUSC2Q8N2Y8 1516 aa26.58■■□□□ 1.85
GDPD3-201ENST00000360688 KIF13AQ9H1H9 1805 aa26.52■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 161.2 ms