RNA–Protein interactions for RNA: ENST00000360093.7

SCN3A-202, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN3A, Length 9,123 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-202ENST00000360093 NISCHQ9Y2I1 1504 aa8.59□□□□□ -1.03
SCN3A-202ENST00000360093 DCAF8L2P0C7V8 631 aa8.47□□□□□ -1.05
SCN3A-202ENST00000360093 SUPT5HO00267 1087 aaKnown RBP7.98□□□□□ -1.13
SCN3A-202ENST00000360093 SHROOM4Q9ULL8 1493 aa7.88□□□□□ -1.15
SCN3A-202ENST00000360093 FAM9AQ8IZU1 332 aaPredicted RBP7.72□□□□□ -1.17
SCN3A-202ENST00000360093 APLP2Q06481 763 aa7.68□□□□□ -1.18
SCN3A-202ENST00000360093 EHMT2Q96KQ7 1210 aa7.53□□□□□ -1.2
SCN3A-202ENST00000360093 TRIM41Q8WV44 630 aa7.51□□□□□ -1.21
SCN3A-202ENST00000360093 PELP1Q8IZL8 1130 aaKnown RBP7.49□□□□□ -1.21
SCN3A-202ENST00000360093 ZEB1P37275 1124 aaPredicted RBP7.42□□□□□ -1.22
SCN3A-202ENST00000360093 UBTFP17480 764 aaKnown RBP7.39□□□□□ -1.23
SCN3A-202ENST00000360093 ATP1B4Q9UN42 357 aaPredicted RBP7.33□□□□□ -1.24
SCN3A-202ENST00000360093 PCGF6Q9BYE7 350 aa7.33□□□□□ -1.24
SCN3A-202ENST00000360093 RANGAP1P46060 587 aaPredicted RBP7.31□□□□□ -1.24
SCN3A-202ENST00000360093 CCER1Q8TC90 406 aaPredicted RBP7.29□□□□□ -1.24
SCN3A-202ENST00000360093 ABCC9O60706 1549 aa7.29□□□□□ -1.24
SCN3A-202ENST00000360093 TTBK1Q5TCY1 1321 aaPredicted RBP7.28□□□□□ -1.24
SCN3A-202ENST00000360093 CCDC180Q9P1Z9 1646 aa7.28□□□□□ -1.24
SCN3A-202ENST00000360093 CENPBP07199 599 aaPredicted RBP7.23□□□□□ -1.25
SCN3A-202ENST00000360093 TRIM26Q12899 539 aaPredicted RBP7.2□□□□□ -1.26
SCN3A-202ENST00000360093 CHIC1Q5VXU3 224 aa7.16□□□□□ -1.26
SCN3A-202ENST00000360093 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.14□□□□□ -1.27
SCN3A-202ENST00000360093 HNRNPUL2Q1KMD3 747 aaKnown RBP7.14□□□□□ -1.27
SCN3A-202ENST00000360093 PABPN1Q86U42 306 aaKnown RBP eCLIP7.13□□□□□ -1.27
SCN3A-202ENST00000360093 ZCCHC6Q5VYS8 1495 aaKnown RBP7.12□□□□□ -1.27
SCN3A-202ENST00000360093 MYT1LQ9UL68 1186 aa7.09□□□□□ -1.27
SCN3A-202ENST00000360093 NEFLP07196 543 aa7.09□□□□□ -1.27
SCN3A-202ENST00000360093 SCRIBQ14160 1630 aa7.06□□□□□ -1.28
SCN3A-202ENST00000360093 LOC105371045A0A1W2PR82 267 aa7.05□□□□□ -1.28
SCN3A-202ENST00000360093 RB1CC1Q8TDY2 1594 aa7.05□□□□□ -1.28
SCN3A-202ENST00000360093 ERICH6Q7L0X2 663 aa7.04□□□□□ -1.28
SCN3A-202ENST00000360093 PPARGC1BQ86YN6 1023 aaKnown RBP7.04□□□□□ -1.28
SCN3A-202ENST00000360093 ITGAEP38570 1179 aa7.03□□□□□ -1.28
SCN3A-202ENST00000360093 NACADO15069 1562 aa7□□□□□ -1.29
SCN3A-202ENST00000360093 HRCP23327 699 aa6.98□□□□□ -1.29
SCN3A-202ENST00000360093 FAM50AQ14320 339 aaKnown RBP6.96□□□□□ -1.3
SCN3A-202ENST00000360093 CSRNP3Q8WYN3 585 aa6.94□□□□□ -1.3
SCN3A-202ENST00000360093 YTHDC1Q96MU7 727 aaKnown RBP6.92□□□□□ -1.3
SCN3A-202ENST00000360093 CDK11AQ9UQ88 783 aaPredicted RBP6.92□□□□□ -1.3
SCN3A-202ENST00000360093 FBLN2P98095 1184 aa6.91□□□□□ -1.3
SCN3A-202ENST00000360093 POLR3GLQ9BT43 218 aa6.91□□□□□ -1.3
SCN3A-202ENST00000360093 TRIM52Q96A61 297 aa6.91□□□□□ -1.3
SCN3A-202ENST00000360093 DCAF1Q9Y4B6 1507 aa6.91□□□□□ -1.3
SCN3A-202ENST00000360093 DAXXQ9UER7 740 aaPredicted RBP6.86□□□□□ -1.31
SCN3A-202ENST00000360093 MYT1Q01538 1121 aa6.85□□□□□ -1.31
SCN3A-202ENST00000360093 SLC4A1APQ9BWU0 796 aaKnown RBP6.85□□□□□ -1.31
SCN3A-202ENST00000360093 DIEXFQ68CQ4 756 aaKnown RBP6.84□□□□□ -1.31
SCN3A-202ENST00000360093 EEA1Q15075 1411 aa6.83□□□□□ -1.32
SCN3A-202ENST00000360093 BAZ1AQ9NRL2 1556 aaPredicted RBP6.81□□□□□ -1.32
SCN3A-202ENST00000360093 NEUROD1Q13562 356 aa6.81□□□□□ -1.32
SCN3A-202ENST00000360093 BAZ1BQ9UIG0 1483 aaKnown RBP6.8□□□□□ -1.32
SCN3A-202ENST00000360093 NPM1P06748 294 aaKnown RBP eCLIP6.8□□□□□ -1.32
SCN3A-202ENST00000360093 ACIN1Q9UKV3 1341 aaKnown RBP6.8□□□□□ -1.32
SCN3A-202ENST00000360093 ANP32CO43423 234 aa6.79□□□□□ -1.32
SCN3A-202ENST00000360093 P3H3Q8IVL6 736 aa6.79□□□□□ -1.32
SCN3A-202ENST00000360093 RSF1Q96T23 1441 aaPredicted RBP6.78□□□□□ -1.32
SCN3A-202ENST00000360093 ESF1Q9H501 851 aaKnown RBP6.75□□□□□ -1.33
SCN3A-202ENST00000360093 ZNF777Q9ULD5 760 aaPredicted RBP6.75□□□□□ -1.33
SCN3A-202ENST00000360093 ZNF316A6NFI3 1004 aaPredicted RBP6.75□□□□□ -1.33
SCN3A-202ENST00000360093 NEFMP07197 916 aa6.75□□□□□ -1.33
SCN3A-202ENST00000360093 MYO15BQ96JP2 1530 aa6.75□□□□□ -1.33
SCN3A-202ENST00000360093 CHMP7Q8WUX9 453 aaPredicted RBP6.75□□□□□ -1.33
SCN3A-202ENST00000360093 CNGB1Q14028 1251 aaPredicted RBP6.74□□□□□ -1.33
SCN3A-202ENST00000360093 ZNF326Q5BKZ1 582 aaKnown RBP6.74□□□□□ -1.33
SCN3A-202ENST00000360093 GOLGA3Q08378 1498 aa6.73□□□□□ -1.33
SCN3A-202ENST00000360093 WRNQ14191 1432 aaPredicted RBP eCLIP6.72□□□□□ -1.33
SCN3A-202ENST00000360093 KIF27Q86VH2 1401 aa6.72□□□□□ -1.33
SCN3A-202ENST00000360093 CLSPNQ9HAW4 1339 aa6.72□□□□□ -1.33
SCN3A-202ENST00000360093 BCANQ96GW7 911 aa6.72□□□□□ -1.33
SCN3A-202ENST00000360093 MTUS2Q5JR59 1369 aa6.71□□□□□ -1.33
SCN3A-202ENST00000360093 TONSLQ96HA7 1378 aa6.71□□□□□ -1.33
SCN3A-202ENST00000360093 CLIP1P30622 1438 aa6.71□□□□□ -1.34
SCN3A-202ENST00000360093 TSPY4P0CV99 314 aa6.71□□□□□ -1.34
SCN3A-202ENST00000360093 TSPY10P0CW01 314 aa6.71□□□□□ -1.34
SCN3A-202ENST00000360093 SMARCA2P51531 1590 aa6.7□□□□□ -1.34
SCN3A-202ENST00000360093 ARID3CA6NKF2 412 aa6.7□□□□□ -1.34
SCN3A-202ENST00000360093 ZBTB47Q9UFB7 747 aaPredicted RBP6.7□□□□□ -1.34
SCN3A-202ENST00000360093 CEP164Q9UPV0 1460 aa6.69□□□□□ -1.34
SCN3A-202ENST00000360093 STAG3Q9UJ98 1225 aa6.68□□□□□ -1.34
SCN3A-202ENST00000360093 ERCC6Q03468 1493 aa6.67□□□□□ -1.34
SCN3A-202ENST00000360093 PLEKHD1A6NEE1 506 aa6.65□□□□□ -1.35
SCN3A-202ENST00000360093 TNIKQ9UKE5 1360 aa6.65□□□□□ -1.35
SCN3A-202ENST00000360093 CANXP27824 592 aaKnown RBP6.64□□□□□ -1.35
SCN3A-202ENST00000360093 CEP162Q5TB80 1403 aa6.64□□□□□ -1.35
SCN3A-202ENST00000360093 RTL5Q5HYW3 569 aaPredicted RBP6.64□□□□□ -1.35
SCN3A-202ENST00000360093 FHAD1B1AJZ9 1412 aa6.63□□□□□ -1.35
SCN3A-202ENST00000360093 CHGAP10645 457 aaKnown RBP6.62□□□□□ -1.35
SCN3A-202ENST00000360093 PDS5BQ9NTI5 1447 aa6.61□□□□□ -1.35
SCN3A-202ENST00000360093 CECR2Q9BXF3 1484 aa6.61□□□□□ -1.35
SCN3A-202ENST00000360093 CHIC2Q9UKJ5 165 aa6.6□□□□□ -1.35
SCN3A-202ENST00000360093 SLC24A1O60721 1099 aa6.59□□□□□ -1.35
SCN3A-202ENST00000360093 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.59□□□□□ -1.35
SCN3A-202ENST00000360093 TOP2AP11388 1531 aaKnown RBP6.59□□□□□ -1.35
SCN3A-202ENST00000360093 MROH2BQ7Z745 1585 aa6.58□□□□□ -1.36
SCN3A-202ENST00000360093 CCDC88BA6NC98 1476 aa6.57□□□□□ -1.36
SCN3A-202ENST00000360093 CFDP1Q9UEE9 299 aaPredicted RBP6.57□□□□□ -1.36
SCN3A-202ENST00000360093 CUX2O14529 1486 aa6.56□□□□□ -1.36
SCN3A-202ENST00000360093 CARMIL1Q5VZK9 1371 aa6.56□□□□□ -1.36
SCN3A-202ENST00000360093 EIF4G2P78344 907 aaKnown RBP eCLIP6.55□□□□□ -1.36
SCN3A-202ENST00000360093 CDCA8Q53HL2 280 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms